EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020000162 (Gene tree)
Gene ID: -
Gene Symbol: rbfox1l
Alias: -
Full Name: RNA binding fox-1 homolog 1%2C like
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 14363 bases
Position: chr16:18538561-18552923
Accession: ZDB-GENE-040923-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020025637	Fox-1_C	PF12414.8	9.3e-33	1	1
ENSORLP00020006790	Fox-1_C	PF12414.8	9.9e-33	1	1
ENSORLP00020025621	Fox-1_C	PF12414.8	8.8e-23	1	1
ENSORLP00020006790	RRM_1	PF00076.22	8.1e-18	1	1
ENSORLP00020025621	RRM_1	PF00076.22	8.8e-18	1	1
ENSORLP00020025637	RRM_1	PF00076.22	8.8e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020003934	-	4585	-	ENSORLP00020025637	381 (aa)	-	-
ENSORLT00020003972	-	1149	-	ENSORLP00020025621	382 (aa)	-	-
ENSORLT00020003982	-	4636	-	ENSORLP00020006790	368 (aa)	-	-

Gene Model

Click here to download ENSORLG00020000162's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020000162's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020000162	rbfox1l	65	65.267	ENSORLG00020008976	rbfox2	72	58.333
ENSORLG00020000162	rbfox1l	90	60.597	ENSORLG00020018030	rbfox3b	59	73.246
ENSORLG00020000162	rbfox1l	65	61.278	ENSORLG00020005676	-	57	63.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020000162	rbfox1l	97	89.702	ENSAPOG00000016304	rbfox1l	98	89.702	Acanthochromis_polyacanthus
ENSORLG00020000162	rbfox1l	100	84.595	ENSACIG00000006441	rbfox1l	100	83.812	Amphilophus_citrinellus
ENSORLG00020000162	rbfox1l	91	86.527	ENSAOCG00000020938	rbfox1l	97	85.976	Amphiprion_ocellaris
ENSORLG00020000162	rbfox1l	100	90.289	ENSAPEG00000008232	rbfox1l	100	90.289	Amphiprion_percula
ENSORLG00020000162	rbfox1l	100	86.423	ENSATEG00000022649	rbfox1l	100	85.640	Anabas_testudineus
ENSORLG00020000162	rbfox1l	67	73.913	ENSACAG00000011931	-	89	75.000	Anolis_carolinensis
ENSORLG00020000162	rbfox1l	100	86.684	ENSACLG00000021394	rbfox1l	100	88.251	Astatotilapia_calliptera
ENSORLG00020000162	rbfox1l	100	84.715	ENSAMXG00000010470	rbfox1l	100	82.902	Astyanax_mexicanus
ENSORLG00020000162	rbfox1l	100	53.563	ENSCPBG00000010944	-	100	57.584	Chrysemys_picta_bellii
ENSORLG00020000162	rbfox1l	100	87.760	ENSCSEG00000018898	rbfox1l	100	85.938	Cynoglossus_semilaevis
ENSORLG00020000162	rbfox1l	100	90.551	ENSCVAG00000007986	rbfox1l	100	90.551	Cyprinodon_variegatus
ENSORLG00020000162	rbfox1l	100	83.161	ENSDARG00000021184	rbfox1l	100	80.570	Danio_rerio
ENSORLG00020000162	rbfox1l	100	80.153	ENSELUG00000015077	rbfox1l	100	81.425	Esox_lucius
ENSORLG00020000162	rbfox1l	92	83.691	ENSFHEG00000016557	rbfox1l	95	92.683	Fundulus_heteroclitus
ENSORLG00020000162	rbfox1l	100	82.768	ENSGMOG00000005040	rbfox1l	100	81.984	Gadus_morhua
ENSORLG00020000162	rbfox1l	97	88.056	ENSGAFG00000013211	rbfox1l	99	88.056	Gambusia_affinis
ENSORLG00020000162	rbfox1l	100	87.467	ENSGACG00000010757	rbfox1l	100	87.990	Gasterosteus_aculeatus
ENSORLG00020000162	rbfox1l	68	71.260	ENSGAGG00000012440	-	84	72.245	Gopherus_agassizii
ENSORLG00020000162	rbfox1l	100	86.684	ENSHBUG00000013406	rbfox1l	100	88.251	Haplochromis_burtoni
ENSORLG00020000162	rbfox1l	100	83.854	ENSHCOG00000020771	rbfox1l	100	85.677	Hippocampus_comes
ENSORLG00020000162	rbfox1l	99	81.890	ENSIPUG00000000065	rbfox1l	99	82.073	Ictalurus_punctatus
ENSORLG00020000162	rbfox1l	100	86.753	ENSKMAG00000005146	rbfox1l	100	85.974	Kryptolebias_marmoratus
ENSORLG00020000162	rbfox1l	100	89.556	ENSLBEG00000017089	rbfox1l	100	90.078	Labrus_bergylta
ENSORLG00020000162	rbfox1l	100	88.512	ENSMAMG00000019480	rbfox1l	100	88.512	Mastacembelus_armatus
ENSORLG00020000162	rbfox1l	100	86.684	ENSMZEG00005016374	rbfox1l	100	88.251	Maylandia_zebra
ENSORLG00020000162	rbfox1l	100	88.773	ENSMMOG00000016530	rbfox1l	100	87.990	Mola_mola
ENSORLG00020000162	rbfox1l	100	85.117	ENSMALG00000009384	rbfox1l	100	85.640	Monopterus_albus
ENSORLG00020000162	rbfox1l	100	89.556	ENSNBRG00000003346	rbfox1l	100	88.773	Neolamprologus_brichardi
ENSORLG00020000162	rbfox1l	100	87.206	ENSONIG00000012754	rbfox1l	100	88.773	Oreochromis_niloticus
ENSORLG00020000162	rbfox1l	100	99.213	ENSORLG00000011269	rbfox1l	100	99.213	Oryzias_latipes
ENSORLG00020000162	rbfox1l	100	98.950	ENSORLG00015013464	rbfox1l	100	98.950	Oryzias_latipes_hsok
ENSORLG00020000162	rbfox1l	100	96.588	ENSOMEG00000010584	rbfox1l	100	96.588	Oryzias_melastigma
ENSORLG00020000162	rbfox1l	100	85.938	ENSPKIG00000012029	rbfox1l	100	85.417	Paramormyrops_kingsleyae
ENSORLG00020000162	rbfox1l	100	81.937	ENSPMGG00000012082	rbfox1l	100	80.105	Periophthalmus_magnuspinnatus
ENSORLG00020000162	rbfox1l	100	90.339	ENSPFOG00000009338	rbfox1l	100	90.078	Poecilia_formosa
ENSORLG00020000162	rbfox1l	88	81.040	ENSPLAG00000012816	rbfox1l	94	80.192	Poecilia_latipinna
ENSORLG00020000162	rbfox1l	100	86.162	ENSPMEG00000017597	rbfox1l	100	85.640	Poecilia_mexicana
ENSORLG00020000162	rbfox1l	100	86.423	ENSPREG00000007940	rbfox1l	100	85.901	Poecilia_reticulata
ENSORLG00020000162	rbfox1l	100	86.423	ENSPNYG00000002098	rbfox1l	100	87.990	Pundamilia_nyererei
ENSORLG00020000162	rbfox1l	100	85.271	ENSPNAG00000001620	rbfox1l	100	81.654	Pygocentrus_nattereri
ENSORLG00020000162	rbfox1l	100	81.558	ENSSFOG00015000675	rbfox1l	100	82.857	Scleropages_formosus
ENSORLG00020000162	rbfox1l	100	86.684	ENSSMAG00000013090	rbfox1l	100	87.206	Scophthalmus_maximus
ENSORLG00020000162	rbfox1l	100	85.090	ENSSDUG00000008705	rbfox1l	100	86.375	Seriola_dumerili
ENSORLG00020000162	rbfox1l	100	87.629	ENSSLDG00000022256	rbfox1l	100	86.598	Seriola_lalandi_dorsalis
ENSORLG00020000162	rbfox1l	100	91.076	ENSSPAG00000016620	rbfox1l	100	91.076	Stegastes_partitus
ENSORLG00020000162	rbfox1l	96	84.865	ENSTRUG00000015905	rbfox1l	100	82.703	Takifugu_rubripes
ENSORLG00020000162	rbfox1l	67	80.669	ENSTNIG00000008088	rbfox1l	97	83.588	Tetraodon_nigroviridis
ENSORLG00020000162	rbfox1l	100	90.078	ENSXMAG00000023471	rbfox1l	100	89.817	Xiphophorus_maculatus