EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020000578 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 10608 bases
Position: chr2:15016577-15027184
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020018429	RRM_1	PF00076.22	1.6e-30	1	2
ENSORLP00020018429	RRM_1	PF00076.22	1.6e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020027257	PSPC1-201	4834	-	ENSORLP00020018429	506 (aa)	-	-

Gene Model

Click here to download ENSORLG00020000578's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020000578's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020000578	PSPC1	64	64.939	ENSORLG00020003761	nono	75	65.244

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020000578	PSPC1	87	65.409	ENSG00000121390	PSPC1	82	78.395	Homo_sapiens
ENSORLG00020000578	PSPC1	100	76.571	ENSAPOG00000015946	pspc1	100	78.626	Acanthochromis_polyacanthus
ENSORLG00020000578	PSPC1	92	63.168	ENSAMEG00000017420	PSPC1	88	69.787	Ailuropoda_melanoleuca
ENSORLG00020000578	PSPC1	100	70.817	ENSACIG00000018695	pspc1	100	71.012	Amphilophus_citrinellus
ENSORLG00020000578	PSPC1	100	76.471	ENSAOCG00000005279	pspc1	100	78.707	Amphiprion_ocellaris
ENSORLG00020000578	PSPC1	100	76.908	ENSAPEG00000015927	pspc1	100	79.159	Amphiprion_percula
ENSORLG00020000578	PSPC1	100	67.311	ENSATEG00000004878	pspc1	100	66.538	Anabas_testudineus
ENSORLG00020000578	PSPC1	67	66.006	ENSAPLG00000003643	SFPQ	82	58.222	Anas_platyrhynchos
ENSORLG00020000578	PSPC1	75	64.833	ENSAPLG00000006246	PSPC1	100	68.704	Anas_platyrhynchos
ENSORLG00020000578	PSPC1	71	58.967	ENSACAG00000013307	-	73	51.406	Anolis_carolinensis
ENSORLG00020000578	PSPC1	87	66.109	ENSACAG00000002093	PSPC1	91	67.871	Anolis_carolinensis
ENSORLG00020000578	PSPC1	91	63.800	ENSANAG00000000059	PSPC1	83	76.852	Aotus_nancymaae
ENSORLG00020000578	PSPC1	100	70.000	ENSACLG00000027220	pspc1	100	70.039	Astatotilapia_calliptera
ENSORLG00020000578	PSPC1	97	61.036	ENSAMXG00000036881	pspc1	96	65.970	Astyanax_mexicanus
ENSORLG00020000578	PSPC1	93	65.139	ENSBTAG00000003934	PSPC1	89	68.723	Bos_taurus
ENSORLG00020000578	PSPC1	86	66.522	ENSCJAG00000004554	PSPC1	88	69.787	Callithrix_jacchus
ENSORLG00020000578	PSPC1	87	67.021	ENSCAFG00020002009	PSPC1	83	78.395	Canis_lupus_dingo
ENSORLG00020000578	PSPC1	93	65.139	ENSCHIG00000016708	PSPC1	89	68.723	Capra_hircus
ENSORLG00020000578	PSPC1	75	62.750	ENSTSYG00000032882	PSPC1	88	63.433	Carlito_syrichta
ENSORLG00020000578	PSPC1	87	65.618	ENSCPOG00000000395	PSPC1	83	78.395	Cavia_porcellus
ENSORLG00020000578	PSPC1	91	63.800	ENSCCAG00000033498	PSPC1	88	69.787	Cebus_capucinus
ENSORLG00020000578	PSPC1	88	64.403	ENSCATG00000036434	PSPC1	92	76.877	Cercocebus_atys
ENSORLG00020000578	PSPC1	76	63.466	ENSCLAG00000005241	PSPC1	92	67.303	Chinchilla_lanigera
ENSORLG00020000578	PSPC1	89	61.066	ENSCHOG00000008913	PSPC1	89	65.823	Choloepus_hoffmanni
ENSORLG00020000578	PSPC1	88	65.496	ENSCPBG00000020859	PSPC1	90	68.842	Chrysemys_picta_bellii
ENSORLG00020000578	PSPC1	86	45.033	ENSCSAVG00000003533	-	81	45.495	Ciona_savignyi
ENSORLG00020000578	PSPC1	86	52.026	ENSCANG00000018948	PSPC1	87	80.534	Colobus_angolensis_palliatus
ENSORLG00020000578	PSPC1	92	63.889	ENSCGRG00001018368	Pspc1	88	69.574	Cricetulus_griseus_chok1gshd
ENSORLG00020000578	PSPC1	92	63.889	ENSCGRG00000011724	Pspc1	88	69.574	Cricetulus_griseus_crigri
ENSORLG00020000578	PSPC1	100	71.098	ENSCVAG00000007679	-	100	73.745	Cyprinodon_variegatus
ENSORLG00020000578	PSPC1	93	64.909	ENSDARG00000006621	pspc1	100	67.246	Danio_rerio
ENSORLG00020000578	PSPC1	88	65.966	ENSDNOG00000011078	PSPC1	89	69.053	Dasypus_novemcinctus
ENSORLG00020000578	PSPC1	90	62.069	ENSDORG00000016050	Pspc1	90	66.318	Dipodomys_ordii
ENSORLG00020000578	PSPC1	52	79.208	ENSETEG00000000502	-	60	79.208	Echinops_telfairi
ENSORLG00020000578	PSPC1	82	58.295	ENSEBUG00000003964	-	63	65.341	Eptatretus_burgeri
ENSORLG00020000578	PSPC1	60	43.465	ENSEBUG00000010133	pspc1	72	47.636	Eptatretus_burgeri
ENSORLG00020000578	PSPC1	87	66.454	ENSEASG00005000119	PSPC1	87	72.958	Equus_asinus_asinus
ENSORLG00020000578	PSPC1	87	66.454	ENSECAG00000017286	PSPC1	87	72.958	Equus_caballus
ENSORLG00020000578	PSPC1	51	70.385	ENSEEUG00000011288	-	51	70.385	Erinaceus_europaeus
ENSORLG00020000578	PSPC1	100	65.741	ENSELUG00000003746	pspc1	100	66.300	Esox_lucius
ENSORLG00020000578	PSPC1	87	65.618	ENSFCAG00000027841	PSPC1	83	78.395	Felis_catus
ENSORLG00020000578	PSPC1	89	65.503	ENSFALG00000008750	PSPC1	89	68.763	Ficedula_albicollis
ENSORLG00020000578	PSPC1	87	66.809	ENSFDAG00000002617	PSPC1	90	69.362	Fukomys_damarensis
ENSORLG00020000578	PSPC1	100	63.410	ENSGMOG00000015074	pspc1	100	64.054	Gadus_morhua
ENSORLG00020000578	PSPC1	87	66.176	ENSGALG00000017142	PSPC1	90	68.842	Gallus_gallus
ENSORLG00020000578	PSPC1	76	74.809	ENSGAFG00000006327	pspc1	81	78.880	Gambusia_affinis
ENSORLG00020000578	PSPC1	100	67.899	ENSGACG00000014901	pspc1	94	80.299	Gasterosteus_aculeatus
ENSORLG00020000578	PSPC1	88	65.496	ENSGAGG00000019164	PSPC1	90	68.842	Gopherus_agassizii
ENSORLG00020000578	PSPC1	88	56.129	ENSGAGG00000017325	-	69	57.701	Gopherus_agassizii
ENSORLG00020000578	PSPC1	87	65.409	ENSGGOG00000003414	PSPC1	82	78.395	Gorilla_gorilla
ENSORLG00020000578	PSPC1	100	76.493	ENSHBUG00000001139	pspc1	100	79.344	Haplochromis_burtoni
ENSORLG00020000578	PSPC1	92	64.386	ENSHGLG00000018811	PSPC1	89	68.511	Heterocephalus_glaber_female
ENSORLG00020000578	PSPC1	62	76.923	ENSHGLG00100007962	PSPC1	87	81.818	Heterocephalus_glaber_male
ENSORLG00020000578	PSPC1	81	72.249	ENSHCOG00000013251	pspc1	96	71.101	Hippocampus_comes
ENSORLG00020000578	PSPC1	100	66.292	ENSIPUG00000013192	pspc1	100	67.228	Ictalurus_punctatus
ENSORLG00020000578	PSPC1	90	65.235	ENSSTOG00000026833	PSPC1	85	76.786	Ictidomys_tridecemlineatus
ENSORLG00020000578	PSPC1	87	64.990	ENSJJAG00000018334	Pspc1	88	69.362	Jaculus_jaculus
ENSORLG00020000578	PSPC1	100	66.142	ENSKMAG00000013525	-	98	75.410	Kryptolebias_marmoratus
ENSORLG00020000578	PSPC1	97	70.019	ENSLBEG00000004474	pspc1	98	72.952	Labrus_bergylta
ENSORLG00020000578	PSPC1	86	67.312	ENSLACG00000010762	PSPC1	88	67.880	Latimeria_chalumnae
ENSORLG00020000578	PSPC1	87	68.376	ENSLOCG00000010832	pspc1	99	65.103	Lepisosteus_oculatus
ENSORLG00020000578	PSPC1	90	64.242	ENSLAFG00000010968	PSPC1	90	68.632	Loxodonta_africana
ENSORLG00020000578	PSPC1	87	65.199	ENSMFAG00000032728	PSPC1	91	78.462	Macaca_fascicularis
ENSORLG00020000578	PSPC1	87	65.199	ENSMMUG00000020262	PSPC1	88	78.395	Macaca_mulatta
ENSORLG00020000578	PSPC1	87	65.199	ENSMNEG00000027401	PSPC1	87	72.372	Macaca_nemestrina
ENSORLG00020000578	PSPC1	75	64.578	ENSMLEG00000039043	PSPC1	94	68.627	Mandrillus_leucophaeus
ENSORLG00020000578	PSPC1	100	75.330	ENSMAMG00000004333	pspc1	100	75.330	Mastacembelus_armatus
ENSORLG00020000578	PSPC1	100	70.000	ENSMZEG00005005726	pspc1	100	70.039	Maylandia_zebra
ENSORLG00020000578	PSPC1	76	64.762	ENSMGAG00000015134	PSPC1	100	68.613	Meleagris_gallopavo
ENSORLG00020000578	PSPC1	81	66.279	ENSMAUG00000021067	Pspc1	86	66.917	Mesocricetus_auratus
ENSORLG00020000578	PSPC1	90	67.280	ENSMICG00000013970	PSPC1	83	78.395	Microcebus_murinus
ENSORLG00020000578	PSPC1	90	63.434	ENSMOCG00000006060	Pspc1	88	69.149	Microtus_ochrogaster
ENSORLG00020000578	PSPC1	81	71.429	ENSMMOG00000004352	pspc1	65	71.429	Mola_mola
ENSORLG00020000578	PSPC1	82	68.864	ENSMODG00000008029	PSPC1	67	71.667	Monodelphis_domestica
ENSORLG00020000578	PSPC1	100	74.708	ENSMALG00000008914	pspc1	100	77.583	Monopterus_albus
ENSORLG00020000578	PSPC1	82	68.578	MGP_CAROLIEiJ_G0019341	Pspc1	86	74.010	Mus_caroli
ENSORLG00020000578	PSPC1	87	65.546	ENSMUSG00000021938	Pspc1	86	74.010	Mus_musculus
ENSORLG00020000578	PSPC1	87	66.383	MGP_PahariEiJ_G0030359	Pspc1	86	74.010	Mus_pahari
ENSORLG00020000578	PSPC1	87	65.546	MGP_SPRETEiJ_G0020232	Pspc1	86	74.010	Mus_spretus
ENSORLG00020000578	PSPC1	87	67.234	ENSMPUG00000013347	PSPC1	88	69.787	Mustela_putorius_furo
ENSORLG00020000578	PSPC1	87	65.625	ENSMLUG00000017663	PSPC1	89	68.710	Myotis_lucifugus
ENSORLG00020000578	PSPC1	92	63.492	ENSNGAG00000011271	Pspc1	88	68.870	Nannospalax_galili
ENSORLG00020000578	PSPC1	76	75.260	ENSNBRG00000014059	pspc1	92	73.698	Neolamprologus_brichardi
ENSORLG00020000578	PSPC1	87	65.409	ENSNLEG00000001294	PSPC1	88	69.787	Nomascus_leucogenys
ENSORLG00020000578	PSPC1	87	57.717	ENSODEG00000007817	-	88	58.974	Octodon_degus
ENSORLG00020000578	PSPC1	87	64.069	ENSODEG00000019012	-	88	65.659	Octodon_degus
ENSORLG00020000578	PSPC1	100	77.115	ENSONIG00000012010	pspc1	99	79.961	Oreochromis_niloticus
ENSORLG00020000578	PSPC1	81	60.333	ENSOANG00000011381	-	92	56.798	Ornithorhynchus_anatinus
ENSORLG00020000578	PSPC1	70	68.267	ENSOANG00000009017	-	100	69.363	Ornithorhynchus_anatinus
ENSORLG00020000578	PSPC1	88	63.618	ENSOCUG00000006153	PSPC1	90	68.894	Oryctolagus_cuniculus
ENSORLG00020000578	PSPC1	100	97.826	ENSORLG00000004232	-	100	97.826	Oryzias_latipes
ENSORLG00020000578	PSPC1	100	97.233	ENSORLG00015017480	pspc1	100	97.233	Oryzias_latipes_hsok
ENSORLG00020000578	PSPC1	91	64.200	ENSOGAG00000012643	PSPC1	88	69.787	Otolemur_garnettii
ENSORLG00020000578	PSPC1	86	67.597	ENSOARG00000014163	PSPC1	95	68.376	Ovis_aries
ENSORLG00020000578	PSPC1	87	60.684	ENSPPAG00000009836	PSPC1	92	77.160	Pan_paniscus
ENSORLG00020000578	PSPC1	87	65.618	ENSPPRG00000008833	PSPC1	88	69.787	Panthera_pardus
ENSORLG00020000578	PSPC1	75	64.819	ENSPTIG00000016917	PSPC1	84	68.873	Panthera_tigris_altaica
ENSORLG00020000578	PSPC1	82	68.421	ENSPTRG00000005677	PSPC1	82	78.395	Pan_troglodytes
ENSORLG00020000578	PSPC1	87	65.199	ENSPANG00000001992	PSPC1	89	78.462	Papio_anubis
ENSORLG00020000578	PSPC1	100	59.567	ENSPKIG00000003578	pspc1	89	70.450	Paramormyrops_kingsleyae
ENSORLG00020000578	PSPC1	88	65.690	ENSPSIG00000005168	PSPC1	90	68.067	Pelodiscus_sinensis
ENSORLG00020000578	PSPC1	70	69.806	ENSPMGG00000015135	pspc1	98	68.732	Periophthalmus_magnuspinnatus
ENSORLG00020000578	PSPC1	92	63.095	ENSPEMG00000015214	Pspc1	88	69.362	Peromyscus_maniculatus_bairdii
ENSORLG00020000578	PSPC1	57	42.857	ENSPMAG00000004618	pspc1	79	45.000	Petromyzon_marinus
ENSORLG00020000578	PSPC1	85	67.108	ENSPCIG00000017680	PSPC1	90	69.102	Phascolarctos_cinereus
ENSORLG00020000578	PSPC1	99	78.947	ENSPFOG00000003362	pspc1	100	78.752	Poecilia_formosa
ENSORLG00020000578	PSPC1	76	55.584	ENSPLAG00000004407	-	54	56.468	Poecilia_latipinna
ENSORLG00020000578	PSPC1	100	78.764	ENSPLAG00000011540	pspc1	100	78.571	Poecilia_latipinna
ENSORLG00020000578	PSPC1	100	78.378	ENSPMEG00000008322	pspc1	100	78.185	Poecilia_mexicana
ENSORLG00020000578	PSPC1	84	52.283	ENSPMEG00000001025	-	53	56.468	Poecilia_mexicana
ENSORLG00020000578	PSPC1	100	78.185	ENSPREG00000007786	pspc1	100	77.992	Poecilia_reticulata
ENSORLG00020000578	PSPC1	87	64.990	ENSPPYG00000005186	PSPC1	85	73.449	Pongo_abelii
ENSORLG00020000578	PSPC1	91	63.636	ENSPCOG00000014364	PSPC1	88	66.596	Propithecus_coquereli
ENSORLG00020000578	PSPC1	87	65.199	ENSPVAG00000005036	PSPC1	89	68.230	Pteropus_vampyrus
ENSORLG00020000578	PSPC1	100	70.196	ENSPNYG00000008893	pspc1	100	70.233	Pundamilia_nyererei
ENSORLG00020000578	PSPC1	100	65.217	ENSPNAG00000016511	pspc1	100	66.541	Pygocentrus_nattereri
ENSORLG00020000578	PSPC1	90	65.164	ENSRNOG00000020782	Pspc1	86	71.960	Rattus_norvegicus
ENSORLG00020000578	PSPC1	91	64.257	ENSRBIG00000036057	PSPC1	91	78.395	Rhinopithecus_bieti
ENSORLG00020000578	PSPC1	92	63.168	ENSRROG00000036334	PSPC1	82	78.395	Rhinopithecus_roxellana
ENSORLG00020000578	PSPC1	77	59.080	ENSSBOG00000028172	PSPC1	91	75.439	Saimiri_boliviensis_boliviensis
ENSORLG00020000578	PSPC1	85	61.874	ENSSHAG00000004696	PSPC1	90	62.834	Sarcophilus_harrisii
ENSORLG00020000578	PSPC1	87	68.987	ENSSFOG00015001395	pspc1	99	73.348	Scleropages_formosus
ENSORLG00020000578	PSPC1	100	76.226	ENSSMAG00000001761	pspc1	100	75.047	Scophthalmus_maximus
ENSORLG00020000578	PSPC1	100	72.643	ENSSDUG00000010651	pspc1	100	76.155	Seriola_dumerili
ENSORLG00020000578	PSPC1	100	68.972	ENSSLDG00000004284	pspc1	100	69.472	Seriola_lalandi_dorsalis
ENSORLG00020000578	PSPC1	82	62.929	ENSSARG00000000888	PSPC1	89	62.605	Sorex_araneus
ENSORLG00020000578	PSPC1	86	51.562	ENSSPUG00000001136	-	64	51.562	Sphenodon_punctatus
ENSORLG00020000578	PSPC1	91	57.724	ENSSPUG00000008550	PSPC1	89	60.470	Sphenodon_punctatus
ENSORLG00020000578	PSPC1	100	76.173	ENSSPAG00000001921	pspc1	100	78.383	Stegastes_partitus
ENSORLG00020000578	PSPC1	87	65.618	ENSSSCG00000009569	PSPC1	84	78.086	Sus_scrofa
ENSORLG00020000578	PSPC1	87	66.176	ENSTGUG00000011295	PSPC1	99	69.593	Taeniopygia_guttata
ENSORLG00020000578	PSPC1	100	67.823	ENSTRUG00000011335	pspc1	100	69.439	Takifugu_rubripes
ENSORLG00020000578	PSPC1	100	67.379	ENSTNIG00000010358	pspc1	100	70.760	Tetraodon_nigroviridis
ENSORLG00020000578	PSPC1	92	56.557	ENSTBEG00000002361	PSPC1	88	59.081	Tupaia_belangeri
ENSORLG00020000578	PSPC1	91	64.386	ENSTTRG00000003343	PSPC1	89	69.574	Tursiops_truncatus
ENSORLG00020000578	PSPC1	63	76.341	ENSUAMG00000012309	PSPC1	82	81.818	Ursus_americanus
ENSORLG00020000578	PSPC1	83	68.481	ENSUMAG00000013993	PSPC1	91	78.086	Ursus_maritimus
ENSORLG00020000578	PSPC1	75	65.526	ENSVPAG00000010029	PSPC1	100	69.363	Vicugna_pacos
ENSORLG00020000578	PSPC1	87	67.021	ENSVVUG00000006414	PSPC1	84	78.395	Vulpes_vulpes
ENSORLG00020000578	PSPC1	76	74.555	ENSXCOG00000017438	pspc1	93	78.626	Xiphophorus_couchianus
ENSORLG00020000578	PSPC1	76	75.064	ENSXMAG00000007929	pspc1	93	79.135	Xiphophorus_maculatus