EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020000988 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 12523 bases
Position: chr1:21447758-21460280
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020010354	PPR	PF01535.20	4.5e-19	1	2
ENSORLP00020010354	PPR	PF01535.20	4.5e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020016978	-	6595	-	ENSORLP00020010354	673 (aa)	-	-

Gene Model

Click here to download ENSORLG00020000988's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020000988's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020000988	ptcd1	85	47.351	ENSG00000106246	PTCD1	85	47.282	Homo_sapiens
ENSORLG00020000988	ptcd1	85	47.351	ENSG00000248919	ATP5MF-PTCD1	80	47.282	Homo_sapiens
ENSORLG00020000988	ptcd1	91	64.620	ENSAPOG00000010679	ptcd1	96	64.620	Acanthochromis_polyacanthus
ENSORLG00020000988	ptcd1	85	48.510	ENSAMEG00000006224	-	79	48.510	Ailuropoda_melanoleuca
ENSORLG00020000988	ptcd1	95	69.545	ENSACIG00000017861	ptcd1	97	69.545	Amphilophus_citrinellus
ENSORLG00020000988	ptcd1	99	63.650	ENSAOCG00000020741	-	97	63.650	Amphiprion_ocellaris
ENSORLG00020000988	ptcd1	91	64.490	ENSAOCG00000022617	ptcd1	94	64.490	Amphiprion_ocellaris
ENSORLG00020000988	ptcd1	99	63.942	ENSAPEG00000022632	ptcd1	97	63.942	Amphiprion_percula
ENSORLG00020000988	ptcd1	99	65.249	ENSATEG00000007016	ptcd1	96	65.396	Anabas_testudineus
ENSORLG00020000988	ptcd1	82	50.086	ENSAPLG00000006862	-	90	50.086	Anas_platyrhynchos
ENSORLG00020000988	ptcd1	84	48.900	ENSACAG00000012871	-	78	48.900	Anolis_carolinensis
ENSORLG00020000988	ptcd1	85	47.145	ENSANAG00000035790	-	88	47.078	Aotus_nancymaae
ENSORLG00020000988	ptcd1	99	68.228	ENSACLG00000002824	ptcd1	96	68.228	Astatotilapia_calliptera
ENSORLG00020000988	ptcd1	89	49.235	ENSAMXG00000037292	ptcd1	91	49.235	Astyanax_mexicanus
ENSORLG00020000988	ptcd1	88	46.698	ENSBTAG00000020440	-	77	47.327	Bos_taurus
ENSORLG00020000988	ptcd1	85	47.947	ENSCJAG00000015815	-	86	47.876	Callithrix_jacchus
ENSORLG00020000988	ptcd1	86	47.488	ENSCAFG00000015055	-	80	47.488	Canis_familiaris
ENSORLG00020000988	ptcd1	86	47.565	ENSCAFG00020014480	-	80	47.565	Canis_lupus_dingo
ENSORLG00020000988	ptcd1	88	47.276	ENSCHIG00000027000	-	88	47.596	Capra_hircus
ENSORLG00020000988	ptcd1	85	46.129	ENSTSYG00000029495	-	85	46.393	Carlito_syrichta
ENSORLG00020000988	ptcd1	84	47.643	ENSCAPG00000014660	-	92	46.982	Cavia_aperea
ENSORLG00020000988	ptcd1	86	47.798	ENSCPOG00000001780	-	86	47.798	Cavia_porcellus
ENSORLG00020000988	ptcd1	85	48.515	ENSCCAG00000034025	-	86	48.440	Cebus_capucinus
ENSORLG00020000988	ptcd1	85	47.855	ENSCATG00000040859	-	85	48.033	Cercocebus_atys
ENSORLG00020000988	ptcd1	86	48.701	ENSCLAG00000006354	-	86	48.701	Chinchilla_lanigera
ENSORLG00020000988	ptcd1	79	47.425	ENSCSAG00000017794	-	82	47.795	Chlorocebus_sabaeus
ENSORLG00020000988	ptcd1	93	45.312	ENSCPBG00000020866	-	95	45.312	Chrysemys_picta_bellii
ENSORLG00020000988	ptcd1	80	30.357	ENSCING00000007717	-	94	30.357	Ciona_intestinalis
ENSORLG00020000988	ptcd1	86	47.377	ENSCANG00000023441	-	86	47.541	Colobus_angolensis_palliatus
ENSORLG00020000988	ptcd1	87	48.604	ENSCGRG00001023686	Ptcd1	86	48.604	Cricetulus_griseus_chok1gshd
ENSORLG00020000988	ptcd1	87	48.604	ENSCGRG00000015031	Ptcd1	86	48.604	Cricetulus_griseus_crigri
ENSORLG00020000988	ptcd1	97	59.524	ENSCSEG00000002378	ptcd1	94	59.673	Cynoglossus_semilaevis
ENSORLG00020000988	ptcd1	97	70.031	ENSCVAG00000015826	ptcd1	93	70.031	Cyprinodon_variegatus
ENSORLG00020000988	ptcd1	95	69.891	ENSCVAG00000003621	ptcd1	98	69.565	Cyprinodon_variegatus
ENSORLG00020000988	ptcd1	90	50.943	ENSDARG00000076176	ptcd1	90	50.943	Danio_rerio
ENSORLG00020000988	ptcd1	87	47.222	ENSDNOG00000009957	-	91	45.510	Dasypus_novemcinctus
ENSORLG00020000988	ptcd1	91	45.646	ENSDORG00000000740	Ptcd1	94	45.646	Dipodomys_ordii
ENSORLG00020000988	ptcd1	84	38.569	ENSEBUG00000014515	ptcd1	93	37.343	Eptatretus_burgeri
ENSORLG00020000988	ptcd1	88	47.327	ENSEASG00005002480	-	87	47.785	Equus_asinus_asinus
ENSORLG00020000988	ptcd1	88	47.484	ENSECAG00000016617	-	87	47.943	Equus_caballus
ENSORLG00020000988	ptcd1	88	55.625	ENSELUG00000016517	ptcd1	86	55.625	Esox_lucius
ENSORLG00020000988	ptcd1	89	47.785	ENSFCAG00000015069	-	89	47.785	Felis_catus
ENSORLG00020000988	ptcd1	94	46.280	ENSFALG00000013803	-	93	46.154	Ficedula_albicollis
ENSORLG00020000988	ptcd1	83	48.900	ENSFDAG00000006393	-	83	48.739	Fukomys_damarensis
ENSORLG00020000988	ptcd1	78	74.528	ENSFHEG00000012491	ptcd1	92	74.528	Fundulus_heteroclitus
ENSORLG00020000988	ptcd1	86	62.906	ENSGMOG00000007639	ptcd1	94	62.906	Gadus_morhua
ENSORLG00020000988	ptcd1	82	48.739	ENSGALG00000004711	-	83	49.161	Gallus_gallus
ENSORLG00020000988	ptcd1	87	72.483	ENSGAFG00000013175	ptcd1	89	70.560	Gambusia_affinis
ENSORLG00020000988	ptcd1	87	69.449	ENSGACG00000016607	ptcd1	93	69.449	Gasterosteus_aculeatus
ENSORLG00020000988	ptcd1	82	46.895	ENSGAGG00000021832	-	89	46.895	Gopherus_agassizii
ENSORLG00020000988	ptcd1	85	47.049	ENSGGOG00000015123	-	86	46.982	Gorilla_gorilla
ENSORLG00020000988	ptcd1	99	68.228	ENSHBUG00000018275	ptcd1	96	68.228	Haplochromis_burtoni
ENSORLG00020000988	ptcd1	87	47.910	ENSHGLG00000017621	-	87	48.475	Heterocephalus_glaber_female
ENSORLG00020000988	ptcd1	87	47.910	ENSHGLG00100007218	-	87	48.475	Heterocephalus_glaber_male
ENSORLG00020000988	ptcd1	96	56.278	ENSHCOG00000010784	ptcd1	94	56.884	Hippocampus_comes
ENSORLG00020000988	ptcd1	90	47.452	ENSSTOG00000001682	-	89	47.611	Ictidomys_tridecemlineatus
ENSORLG00020000988	ptcd1	86	47.947	ENSJJAG00000000319	Ptcd1	89	47.419	Jaculus_jaculus
ENSORLG00020000988	ptcd1	98	65.932	ENSKMAG00000008708	ptcd1	95	66.074	Kryptolebias_marmoratus
ENSORLG00020000988	ptcd1	99	62.162	ENSLBEG00000008061	ptcd1	97	62.162	Labrus_bergylta
ENSORLG00020000988	ptcd1	86	48.667	ENSLACG00000011172	ptcd1	84	48.667	Latimeria_chalumnae
ENSORLG00020000988	ptcd1	89	50.383	ENSLOCG00000004833	ptcd1	96	50.485	Lepisosteus_oculatus
ENSORLG00020000988	ptcd1	86	47.549	ENSLAFG00000002588	-	86	47.549	Loxodonta_africana
ENSORLG00020000988	ptcd1	85	47.855	ENSMFAG00000041324	-	85	47.783	Macaca_fascicularis
ENSORLG00020000988	ptcd1	85	47.690	ENSMMUG00000030408	-	85	47.619	Macaca_mulatta
ENSORLG00020000988	ptcd1	85	47.690	ENSMNEG00000043786	-	85	47.619	Macaca_nemestrina
ENSORLG00020000988	ptcd1	85	35.511	ENSMLEG00000031179	-	83	36.938	Mandrillus_leucophaeus
ENSORLG00020000988	ptcd1	99	64.766	ENSMAMG00000007623	ptcd1	95	64.766	Mastacembelus_armatus
ENSORLG00020000988	ptcd1	99	68.228	ENSMZEG00005012722	ptcd1	96	68.228	Maylandia_zebra
ENSORLG00020000988	ptcd1	86	47.826	ENSMGAG00000004211	-	81	47.826	Meleagris_gallopavo
ENSORLG00020000988	ptcd1	85	45.695	ENSMICG00000017428	-	85	45.634	Microcebus_murinus
ENSORLG00020000988	ptcd1	98	64.971	ENSMMOG00000020243	ptcd1	94	69.243	Mola_mola
ENSORLG00020000988	ptcd1	89	45.126	ENSMODG00000001350	-	85	45.126	Monodelphis_domestica
ENSORLG00020000988	ptcd1	91	68.153	ENSMALG00000018442	ptcd1	87	68.153	Monopterus_albus
ENSORLG00020000988	ptcd1	87	47.154	MGP_CAROLIEiJ_G0028011	Ptcd1	88	47.249	Mus_caroli
ENSORLG00020000988	ptcd1	87	47.403	ENSMUSG00000029624	Ptcd1	88	47.097	Mus_musculus
ENSORLG00020000988	ptcd1	88	47.611	MGP_PahariEiJ_G0024580	Ptcd1	89	48.006	Mus_pahari
ENSORLG00020000988	ptcd1	87	46.474	MGP_SPRETEiJ_G0029012	Ptcd1	88	47.343	Mus_spretus
ENSORLG00020000988	ptcd1	85	47.798	ENSMPUG00000016518	-	88	47.771	Mustela_putorius_furo
ENSORLG00020000988	ptcd1	88	47.695	ENSMLUG00000010994	-	82	48.101	Myotis_lucifugus
ENSORLG00020000988	ptcd1	99	65.598	ENSNBRG00000010079	ptcd1	96	68.429	Neolamprologus_brichardi
ENSORLG00020000988	ptcd1	76	47.601	ENSNLEG00000011060	-	90	47.601	Nomascus_leucogenys
ENSORLG00020000988	ptcd1	90	45.411	ENSMEUG00000006930	-	90	45.411	Notamacropus_eugenii
ENSORLG00020000988	ptcd1	76	53.913	ENSOPRG00000013647	-	76	58.772	Ochotona_princeps
ENSORLG00020000988	ptcd1	87	68.844	ENSONIG00000003168	ptcd1	99	68.844	Oreochromis_niloticus
ENSORLG00020000988	ptcd1	81	45.517	ENSOANG00000007728	-	75	45.517	Ornithorhynchus_anatinus
ENSORLG00020000988	ptcd1	83	48.718	ENSOCUG00000010584	-	82	48.557	Oryctolagus_cuniculus
ENSORLG00020000988	ptcd1	100	98.071	ENSORLG00000009275	ptcd1	100	98.071	Oryzias_latipes
ENSORLG00020000988	ptcd1	100	97.920	ENSORLG00015010557	ptcd1	100	97.920	Oryzias_latipes_hsok
ENSORLG00020000988	ptcd1	99	84.858	ENSOMEG00000020627	ptcd1	99	84.858	Oryzias_melastigma
ENSORLG00020000988	ptcd1	85	46.217	ENSOGAG00000010877	-	86	46.645	Otolemur_garnettii
ENSORLG00020000988	ptcd1	88	43.849	ENSOARG00000018676	-	89	44.164	Ovis_aries
ENSORLG00020000988	ptcd1	85	47.185	ENSPPAG00000036024	-	85	47.273	Pan_paniscus
ENSORLG00020000988	ptcd1	89	47.500	ENSPPRG00000003478	-	90	47.500	Panthera_pardus
ENSORLG00020000988	ptcd1	85	47.351	ENSPTRG00000019452	-	85	47.438	Pan_troglodytes
ENSORLG00020000988	ptcd1	85	48.020	ENSPANG00000016730	-	85	48.197	Papio_anubis
ENSORLG00020000988	ptcd1	83	52.860	ENSPKIG00000014215	ptcd1	84	53.287	Paramormyrops_kingsleyae
ENSORLG00020000988	ptcd1	83	47.279	ENSPSIG00000011184	-	98	47.789	Pelodiscus_sinensis
ENSORLG00020000988	ptcd1	74	41.491	ENSPMAG00000009667	ptcd1	100	41.491	Petromyzon_marinus
ENSORLG00020000988	ptcd1	89	45.212	ENSPCIG00000024778	-	85	45.212	Phascolarctos_cinereus
ENSORLG00020000988	ptcd1	98	65.735	ENSPFOG00000004458	ptcd1	96	66.617	Poecilia_formosa
ENSORLG00020000988	ptcd1	94	67.488	ENSPLAG00000011051	ptcd1	96	67.013	Poecilia_latipinna
ENSORLG00020000988	ptcd1	98	66.765	ENSPMEG00000020547	ptcd1	96	66.765	Poecilia_mexicana
ENSORLG00020000988	ptcd1	99	65.000	ENSPREG00000000059	ptcd1	97	65.000	Poecilia_reticulata
ENSORLG00020000988	ptcd1	86	46.819	ENSPPYG00000017377	-	91	46.819	Pongo_abelii
ENSORLG00020000988	ptcd1	77	52.593	ENSPCAG00000001852	-	85	52.593	Procavia_capensis
ENSORLG00020000988	ptcd1	85	47.204	ENSPCOG00000018596	-	88	46.720	Propithecus_coquereli
ENSORLG00020000988	ptcd1	53	56.538	ENSPVAG00000007529	-	56	56.538	Pteropus_vampyrus
ENSORLG00020000988	ptcd1	99	67.789	ENSPNYG00000019993	ptcd1	96	67.789	Pundamilia_nyererei
ENSORLG00020000988	ptcd1	88	51.530	ENSPNAG00000014931	ptcd1	90	52.174	Pygocentrus_nattereri
ENSORLG00020000988	ptcd1	84	47.643	ENSRNOG00000000987	Ptcd1	85	47.987	Rattus_norvegicus
ENSORLG00020000988	ptcd1	86	47.783	ENSRBIG00000043393	-	86	47.947	Rhinopithecus_bieti
ENSORLG00020000988	ptcd1	86	48.671	ENSRROG00000036420	-	86	48.837	Rhinopithecus_roxellana
ENSORLG00020000988	ptcd1	86	47.343	ENSSBOG00000024114	-	87	47.276	Saimiri_boliviensis_boliviensis
ENSORLG00020000988	ptcd1	83	47.993	ENSSHAG00000011376	-	88	47.466	Sarcophilus_harrisii
ENSORLG00020000988	ptcd1	89	50.395	ENSSFOG00015007909	ptcd1	86	50.395	Scleropages_formosus
ENSORLG00020000988	ptcd1	87	66.167	ENSSMAG00000000218	ptcd1	95	66.167	Scophthalmus_maximus
ENSORLG00020000988	ptcd1	96	67.761	ENSSDUG00000015671	ptcd1	97	67.761	Seriola_dumerili
ENSORLG00020000988	ptcd1	96	66.816	ENSSLDG00000014261	ptcd1	96	66.816	Seriola_lalandi_dorsalis
ENSORLG00020000988	ptcd1	82	48.490	ENSSPUG00000003540	-	80	48.490	Sphenodon_punctatus
ENSORLG00020000988	ptcd1	98	66.569	ENSSPAG00000011049	ptcd1	95	66.861	Stegastes_partitus
ENSORLG00020000988	ptcd1	88	48.567	ENSSSCG00000007622	-	93	48.567	Sus_scrofa
ENSORLG00020000988	ptcd1	82	49.043	ENSTGUG00000007563	-	94	49.565	Taeniopygia_guttata
ENSORLG00020000988	ptcd1	92	66.354	ENSTRUG00000013471	ptcd1	88	66.147	Takifugu_rubripes
ENSORLG00020000988	ptcd1	87	67.450	ENSTNIG00000008271	ptcd1	87	67.450	Tetraodon_nigroviridis
ENSORLG00020000988	ptcd1	85	46.656	ENSTBEG00000011021	-	86	46.656	Tupaia_belangeri
ENSORLG00020000988	ptcd1	88	46.890	ENSTTRG00000003006	-	89	46.890	Tursiops_truncatus
ENSORLG00020000988	ptcd1	88	46.519	ENSUAMG00000008049	-	88	46.519	Ursus_americanus
ENSORLG00020000988	ptcd1	85	48.105	ENSVVUG00000008836	-	85	48.105	Vulpes_vulpes
ENSORLG00020000988	ptcd1	85	46.512	ENSXETG00000009891	ptcd1	86	46.512	Xenopus_tropicalis
ENSORLG00020000988	ptcd1	87	72.712	ENSXMAG00000015540	ptcd1	89	70.806	Xiphophorus_maculatus