EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020001277 (Gene tree)
Gene ID: -
Gene Symbol: ddb1
Alias: -
Full Name: damage-specific DNA binding protein 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 49509 bases
Position: chr3:8730918-8780426
Accession: ZDB-GENE-040426-1272
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020000548	CPSF_A	PF03178.15	7.6e-76	1	1
ENSORLP00020021445	CPSF_A	PF03178.15	8.3e-76	1	1
ENSORLP00020000558	CPSF_A	PF03178.15	8.5e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020014509	-	5492	-	ENSORLP00020000558	1125 (aa)	-	-
ENSORLT00020014544	-	5375	-	ENSORLP00020021445	1086 (aa)	-	-
ENSORLT00020014528	-	5375	-	ENSORLP00020000548	1086 (aa)	-	-

Gene Model

Click here to download ENSORLG00020001277's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020001277's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020001277	ddb1	97	89.734	ENSG00000167986	DDB1	100	94.521	Homo_sapiens
ENSORLG00020001277	ddb1	97	96.425	ENSAPOG00000005036	ddb1	99	97.755	Acanthochromis_polyacanthus
ENSORLG00020001277	ddb1	97	89.826	ENSAMEG00000016518	DDB1	96	89.826	Ailuropoda_melanoleuca
ENSORLG00020001277	ddb1	87	97.857	ENSACIG00000020624	ddb1	99	97.857	Amphilophus_citrinellus
ENSORLG00020001277	ddb1	97	96.150	ENSAOCG00000003066	ddb1	96	96.150	Amphiprion_ocellaris
ENSORLG00020001277	ddb1	97	96.150	ENSAPEG00000000092	ddb1	99	97.579	Amphiprion_percula
ENSORLG00020001277	ddb1	96	97.860	ENSATEG00000020571	ddb1	97	97.860	Anabas_testudineus
ENSORLG00020001277	ddb1	94	89.991	ENSAPLG00000007174	DDB1	93	89.991	Anas_platyrhynchos
ENSORLG00020001277	ddb1	97	89.276	ENSACAG00000017758	DDB1	96	89.276	Anolis_carolinensis
ENSORLG00020001277	ddb1	97	89.734	ENSANAG00000021878	DDB1	96	89.734	Aotus_nancymaae
ENSORLG00020001277	ddb1	97	96.242	ENSACLG00000012401	ddb1	99	96.980	Astatotilapia_calliptera
ENSORLG00020001277	ddb1	97	89.734	ENSBTAG00000021569	DDB1	89	89.734	Bos_taurus
ENSORLG00020001277	ddb1	95	37.024	WBGene00010890	ddb-1	94	37.024	Caenorhabditis_elegans
ENSORLG00020001277	ddb1	97	89.734	ENSCJAG00000019319	DDB1	96	89.734	Callithrix_jacchus
ENSORLG00020001277	ddb1	96	91.163	ENSCAFG00000016264	DDB1	99	91.163	Canis_familiaris
ENSORLG00020001277	ddb1	96	91.163	ENSCAFG00020012722	DDB1	99	91.163	Canis_lupus_dingo
ENSORLG00020001277	ddb1	97	89.734	ENSCHIG00000014969	DDB1	96	89.734	Capra_hircus
ENSORLG00020001277	ddb1	97	89.459	ENSTSYG00000008027	DDB1	96	89.459	Carlito_syrichta
ENSORLG00020001277	ddb1	95	89.533	ENSCAPG00000010786	DDB1	96	89.533	Cavia_aperea
ENSORLG00020001277	ddb1	97	89.551	ENSCPOG00000009956	DDB1	96	89.551	Cavia_porcellus
ENSORLG00020001277	ddb1	97	89.734	ENSCCAG00000035883	DDB1	96	89.734	Cebus_capucinus
ENSORLG00020001277	ddb1	95	88.899	ENSCATG00000044495	DDB1	94	88.899	Cercocebus_atys
ENSORLG00020001277	ddb1	97	89.734	ENSCLAG00000004126	DDB1	96	89.734	Chinchilla_lanigera
ENSORLG00020001277	ddb1	97	89.734	ENSCSAG00000006392	DDB1	96	89.734	Chlorocebus_sabaeus
ENSORLG00020001277	ddb1	87	81.621	ENSCHOG00000011377	DDB1	88	81.621	Choloepus_hoffmanni
ENSORLG00020001277	ddb1	97	89.459	ENSCPBG00000017728	DDB1	96	89.459	Chrysemys_picta_bellii
ENSORLG00020001277	ddb1	96	61.362	ENSCING00000007437	-	94	61.362	Ciona_intestinalis
ENSORLG00020001277	ddb1	91	59.632	ENSCSAVG00000004783	-	100	60.166	Ciona_savignyi
ENSORLG00020001277	ddb1	97	89.734	ENSCANG00000019948	DDB1	96	89.734	Colobus_angolensis_palliatus
ENSORLG00020001277	ddb1	97	89.826	ENSCGRG00001016599	Ddb1	98	90.019	Cricetulus_griseus_chok1gshd
ENSORLG00020001277	ddb1	97	89.826	ENSCGRG00000013427	Ddb1	96	89.826	Cricetulus_griseus_crigri
ENSORLG00020001277	ddb1	94	96.984	ENSCSEG00000012499	ddb1	99	95.243	Cynoglossus_semilaevis
ENSORLG00020001277	ddb1	95	97.393	ENSCVAG00000019531	ddb1	99	97.393	Cyprinodon_variegatus
ENSORLG00020001277	ddb1	95	91.978	ENSDARG00000074431	ddb1	94	91.978	Danio_rerio
ENSORLG00020001277	ddb1	96	91.163	ENSDNOG00000014884	DDB1	97	91.163	Dasypus_novemcinctus
ENSORLG00020001277	ddb1	83	93.636	ENSDORG00000000127	Ddb1	95	93.636	Dipodomys_ordii
ENSORLG00020001277	ddb1	95	61.132	FBgn0260962	pic	94	61.132	Drosophila_melanogaster
ENSORLG00020001277	ddb1	72	31.373	FBgn0024698	Cpsf160	63	31.373	Drosophila_melanogaster
ENSORLG00020001277	ddb1	67	93.701	ENSETEG00000001053	-	64	93.701	Echinops_telfairi
ENSORLG00020001277	ddb1	79	83.802	ENSEBUG00000014593	ddb1	97	83.802	Eptatretus_burgeri
ENSORLG00020001277	ddb1	97	89.826	ENSEASG00005008184	DDB1	96	89.826	Equus_asinus_asinus
ENSORLG00020001277	ddb1	97	89.918	ENSECAG00000012136	DDB1	96	89.918	Equus_caballus
ENSORLG00020001277	ddb1	86	87.205	ENSEEUG00000003194	DDB1	85	87.205	Erinaceus_europaeus
ENSORLG00020001277	ddb1	96	95.907	ENSELUG00000023868	ddb1	94	95.907	Esox_lucius
ENSORLG00020001277	ddb1	97	89.826	ENSFCAG00000029716	DDB1	96	89.826	Felis_catus
ENSORLG00020001277	ddb1	96	90.538	ENSFALG00000011981	DDB1	96	89.001	Ficedula_albicollis
ENSORLG00020001277	ddb1	97	89.734	ENSFDAG00000005128	DDB1	96	89.734	Fukomys_damarensis
ENSORLG00020001277	ddb1	85	97.826	ENSFHEG00000022133	ddb1	93	97.826	Fundulus_heteroclitus
ENSORLG00020001277	ddb1	83	97.659	ENSGMOG00000019386	ddb1	94	97.659	Gadus_morhua
ENSORLG00020001277	ddb1	97	89.643	ENSGALG00000042333	DDB1	96	89.643	Gallus_gallus
ENSORLG00020001277	ddb1	96	97.403	ENSGAFG00000013142	ddb1	99	97.403	Gambusia_affinis
ENSORLG00020001277	ddb1	97	95.795	ENSGACG00000017182	ddb1	99	95.795	Gasterosteus_aculeatus
ENSORLG00020001277	ddb1	92	89.082	ENSGAGG00000014124	DDB1	95	89.082	Gopherus_agassizii
ENSORLG00020001277	ddb1	97	89.734	ENSGGOG00000004052	DDB1	96	89.734	Gorilla_gorilla
ENSORLG00020001277	ddb1	97	96.242	ENSHBUG00000008873	ddb1	96	96.242	Haplochromis_burtoni
ENSORLG00020001277	ddb1	97	89.734	ENSHGLG00000018430	DDB1	96	89.734	Heterocephalus_glaber_female
ENSORLG00020001277	ddb1	97	88.726	ENSHGLG00100014475	DDB1	96	88.726	Heterocephalus_glaber_male
ENSORLG00020001277	ddb1	95	97.114	ENSHCOG00000018670	ddb1	98	97.114	Hippocampus_comes
ENSORLG00020001277	ddb1	97	93.951	ENSIPUG00000005612	DDB1	98	95.345	Ictalurus_punctatus
ENSORLG00020001277	ddb1	97	89.734	ENSSTOG00000007552	DDB1	96	89.734	Ictidomys_tridecemlineatus
ENSORLG00020001277	ddb1	97	89.972	ENSJJAG00000017769	Ddb1	95	89.972	Jaculus_jaculus
ENSORLG00020001277	ddb1	95	97.579	ENSKMAG00000002315	ddb1	99	97.579	Kryptolebias_marmoratus
ENSORLG00020001277	ddb1	85	97.607	ENSLBEG00000017065	ddb1	99	97.607	Labrus_bergylta
ENSORLG00020001277	ddb1	95	90.867	ENSLACG00000017611	DDB1	97	90.368	Latimeria_chalumnae
ENSORLG00020001277	ddb1	87	87.033	ENSLOCG00000000012	ddb1	93	87.033	Lepisosteus_oculatus
ENSORLG00020001277	ddb1	97	89.643	ENSLAFG00000011513	DDB1	96	89.643	Loxodonta_africana
ENSORLG00020001277	ddb1	97	89.734	ENSMFAG00000042035	DDB1	96	89.734	Macaca_fascicularis
ENSORLG00020001277	ddb1	97	89.734	ENSMMUG00000002691	DDB1	100	94.286	Macaca_mulatta
ENSORLG00020001277	ddb1	97	89.734	ENSMNEG00000031559	DDB1	96	89.734	Macaca_nemestrina
ENSORLG00020001277	ddb1	97	89.734	ENSMLEG00000044136	DDB1	98	89.440	Mandrillus_leucophaeus
ENSORLG00020001277	ddb1	97	96.700	ENSMAMG00000014372	ddb1	96	96.700	Mastacembelus_armatus
ENSORLG00020001277	ddb1	97	96.150	ENSMZEG00005013835	ddb1	96	96.150	Maylandia_zebra
ENSORLG00020001277	ddb1	90	90.387	ENSMGAG00000004990	DDB1	94	90.387	Meleagris_gallopavo
ENSORLG00020001277	ddb1	97	89.826	ENSMAUG00000012926	Ddb1	96	89.826	Mesocricetus_auratus
ENSORLG00020001277	ddb1	97	89.918	ENSMICG00000013703	DDB1	96	89.918	Microcebus_murinus
ENSORLG00020001277	ddb1	97	89.734	ENSMOCG00000020499	Ddb1	96	89.734	Microtus_ochrogaster
ENSORLG00020001277	ddb1	87	97.755	ENSMMOG00000001758	ddb1	99	97.755	Mola_mola
ENSORLG00020001277	ddb1	95	83.008	ENSMODG00000020353	DDB1	93	83.008	Monodelphis_domestica
ENSORLG00020001277	ddb1	97	96.334	ENSMALG00000014071	ddb1	96	96.334	Monopterus_albus
ENSORLG00020001277	ddb1	97	89.826	MGP_CAROLIEiJ_G0022695	Ddb1	96	89.826	Mus_caroli
ENSORLG00020001277	ddb1	97	89.918	ENSMUSG00000024740	Ddb1	96	89.918	Mus_musculus
ENSORLG00020001277	ddb1	97	89.826	MGP_PahariEiJ_G0014189	Ddb1	96	89.826	Mus_pahari
ENSORLG00020001277	ddb1	97	89.918	MGP_SPRETEiJ_G0023609	Ddb1	96	89.918	Mus_spretus
ENSORLG00020001277	ddb1	97	86.709	ENSMPUG00000014200	DDB1	96	86.709	Mustela_putorius_furo
ENSORLG00020001277	ddb1	97	89.918	ENSMLUG00000013232	DDB1	96	89.918	Myotis_lucifugus
ENSORLG00020001277	ddb1	97	89.918	ENSNGAG00000009384	Ddb1	96	89.918	Nannospalax_galili
ENSORLG00020001277	ddb1	97	96.334	ENSNBRG00000019581	ddb1	96	96.334	Neolamprologus_brichardi
ENSORLG00020001277	ddb1	95	88.437	ENSNLEG00000002022	DDB1	94	88.437	Nomascus_leucogenys
ENSORLG00020001277	ddb1	87	90.213	ENSMEUG00000001099	DDB1	88	90.213	Notamacropus_eugenii
ENSORLG00020001277	ddb1	90	81.059	ENSOPRG00000008254	DDB1	86	81.059	Ochotona_princeps
ENSORLG00020001277	ddb1	97	89.643	ENSODEG00000002419	DDB1	96	89.643	Octodon_degus
ENSORLG00020001277	ddb1	97	96.334	ENSONIG00000005804	ddb1	96	96.334	Oreochromis_niloticus
ENSORLG00020001277	ddb1	91	89.318	ENSOANG00000004897	DDB1	95	89.420	Ornithorhynchus_anatinus
ENSORLG00020001277	ddb1	97	89.826	ENSOCUG00000001667	DDB1	96	89.826	Oryctolagus_cuniculus
ENSORLG00020001277	ddb1	99	99.644	ENSORLG00000001399	ddb1	99	99.644	Oryzias_latipes
ENSORLG00020001277	ddb1	96	99.723	ENSORLG00015002080	ddb1	99	99.723	Oryzias_latipes_hsok
ENSORLG00020001277	ddb1	96	98.799	ENSOMEG00000006181	ddb1	98	98.799	Oryzias_melastigma
ENSORLG00020001277	ddb1	97	89.918	ENSOGAG00000016103	DDB1	96	89.918	Otolemur_garnettii
ENSORLG00020001277	ddb1	97	89.734	ENSOARG00000011716	DDB1	95	89.734	Ovis_aries
ENSORLG00020001277	ddb1	97	89.734	ENSPPAG00000035343	DDB1	96	89.734	Pan_paniscus
ENSORLG00020001277	ddb1	97	89.826	ENSPPRG00000013300	DDB1	96	89.826	Panthera_pardus
ENSORLG00020001277	ddb1	95	89.813	ENSPTIG00000006909	DDB1	94	89.813	Panthera_tigris_altaica
ENSORLG00020001277	ddb1	97	89.734	ENSPTRG00000003737	DDB1	96	89.734	Pan_troglodytes
ENSORLG00020001277	ddb1	97	89.734	ENSPANG00000000242	DDB1	96	89.734	Papio_anubis
ENSORLG00020001277	ddb1	95	95.717	ENSPKIG00000019213	ddb1	94	95.717	Paramormyrops_kingsleyae
ENSORLG00020001277	ddb1	95	88.744	ENSPSIG00000013275	DDB1	96	88.744	Pelodiscus_sinensis
ENSORLG00020001277	ddb1	87	97.755	ENSPMGG00000021179	ddb1	99	97.755	Periophthalmus_magnuspinnatus
ENSORLG00020001277	ddb1	97	89.826	ENSPEMG00000012241	Ddb1	96	89.826	Peromyscus_maniculatus_bairdii
ENSORLG00020001277	ddb1	90	86.346	ENSPMAG00000008479	ddb1	100	86.346	Petromyzon_marinus
ENSORLG00020001277	ddb1	97	90.192	ENSPCIG00000002643	DDB1	96	90.192	Phascolarctos_cinereus
ENSORLG00020001277	ddb1	95	97.852	ENSPFOG00000002768	ddb1	94	97.852	Poecilia_formosa
ENSORLG00020001277	ddb1	96	97.772	ENSPLAG00000017227	ddb1	98	97.772	Poecilia_latipinna
ENSORLG00020001277	ddb1	96	97.772	ENSPMEG00000011398	ddb1	98	97.772	Poecilia_mexicana
ENSORLG00020001277	ddb1	96	97.860	ENSPREG00000004440	ddb1	98	97.860	Poecilia_reticulata
ENSORLG00020001277	ddb1	97	85.649	ENSPPYG00000003193	DDB1	95	85.649	Pongo_abelii
ENSORLG00020001277	ddb1	84	87.440	ENSPCAG00000011040	DDB1	80	87.440	Procavia_capensis
ENSORLG00020001277	ddb1	97	89.570	ENSPCOG00000015176	DDB1	96	89.570	Propithecus_coquereli
ENSORLG00020001277	ddb1	97	89.643	ENSPVAG00000003847	DDB1	96	89.643	Pteropus_vampyrus
ENSORLG00020001277	ddb1	95	95.996	ENSPNAG00000006635	ddb1	97	95.996	Pygocentrus_nattereri
ENSORLG00020001277	ddb1	97	89.918	ENSRNOG00000020715	Ddb1	96	89.918	Rattus_norvegicus
ENSORLG00020001277	ddb1	97	89.734	ENSRBIG00000033611	DDB1	96	89.734	Rhinopithecus_bieti
ENSORLG00020001277	ddb1	97	89.734	ENSRROG00000041407	DDB1	96	89.734	Rhinopithecus_roxellana
ENSORLG00020001277	ddb1	97	89.826	ENSSBOG00000019775	DDB1	96	89.826	Saimiri_boliviensis_boliviensis
ENSORLG00020001277	ddb1	91	87.855	ENSSHAG00000011600	DDB1	95	87.855	Sarcophilus_harrisii
ENSORLG00020001277	ddb1	96	95.721	ENSSFOG00015011151	ddb1	97	95.721	Scleropages_formosus
ENSORLG00020001277	ddb1	97	96.242	ENSSMAG00000009495	ddb1	96	96.242	Scophthalmus_maximus
ENSORLG00020001277	ddb1	97	96.609	ENSSDUG00000004642	ddb1	96	96.609	Seriola_dumerili
ENSORLG00020001277	ddb1	97	96.609	ENSSLDG00000015804	ddb1	96	96.609	Seriola_lalandi_dorsalis
ENSORLG00020001277	ddb1	71	94.340	ENSSARG00000003290	-	71	94.340	Sorex_araneus
ENSORLG00020001277	ddb1	97	89.184	ENSSPUG00000019338	DDB1	96	89.184	Sphenodon_punctatus
ENSORLG00020001277	ddb1	96	97.860	ENSSPAG00000009888	ddb1	99	97.860	Stegastes_partitus
ENSORLG00020001277	ddb1	95	90.552	ENSSSCG00000013094	DDB1	94	90.552	Sus_scrofa
ENSORLG00020001277	ddb1	97	89.093	ENSTGUG00000006414	DDB1	96	89.093	Taeniopygia_guttata
ENSORLG00020001277	ddb1	95	96.834	ENSTRUG00000016682	ddb1	99	96.834	Takifugu_rubripes
ENSORLG00020001277	ddb1	88	89.822	ENSTNIG00000009565	ddb1	95	89.822	Tetraodon_nigroviridis
ENSORLG00020001277	ddb1	91	85.164	ENSTTRG00000011055	DDB1	88	85.164	Tursiops_truncatus
ENSORLG00020001277	ddb1	96	91.163	ENSUAMG00000017793	DDB1	93	91.163	Ursus_americanus
ENSORLG00020001277	ddb1	96	91.163	ENSUMAG00000011788	DDB1	98	91.163	Ursus_maritimus
ENSORLG00020001277	ddb1	87	86.024	ENSVPAG00000007963	DDB1	87	86.024	Vicugna_pacos
ENSORLG00020001277	ddb1	97	89.826	ENSVVUG00000004987	DDB1	96	89.826	Vulpes_vulpes
ENSORLG00020001277	ddb1	97	87.397	ENSXETG00000008820	ddb1	96	87.397	Xenopus_tropicalis
ENSORLG00020001277	ddb1	87	97.653	ENSXCOG00000013956	ddb1	99	97.653	Xiphophorus_couchianus
ENSORLG00020001277	ddb1	96	97.403	ENSXMAG00000000022	ddb1	99	97.403	Xiphophorus_maculatus