EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020001302 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 24005 bases
Position: chr21:662510-686514
Accession: 101165793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020000579	Rif1_N	PF12231.8	2e-81	1	1
ENSORLP00020021472	Rif1_N	PF12231.8	2e-81	1	1
ENSORLP00020000603	Rif1_N	PF12231.8	2e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020014443	-	6856	XM_023950614	ENSORLP00020000603	2278 (aa)	XP_023806382	-
ENSORLT00020014488	-	6730	-	ENSORLP00020000579	2236 (aa)	-	-
ENSORLT00020014468	-	6769	-	ENSORLP00020021472	2249 (aa)	-	-

Gene Model

Click here to download ENSORLG00020001302's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020001302's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020001302	rif1	69	48.524	ENSG00000080345	RIF1	97	51.707	Homo_sapiens
ENSORLG00020001302	rif1	99	65.732	ENSAPOG00000011073	rif1	93	65.031	Acanthochromis_polyacanthus
ENSORLG00020001302	rif1	68	48.471	ENSAMEG00000008461	RIF1	63	48.333	Ailuropoda_melanoleuca
ENSORLG00020001302	rif1	93	64.414	ENSACIG00000017765	rif1	99	56.932	Amphilophus_citrinellus
ENSORLG00020001302	rif1	99	64.218	ENSAOCG00000017231	rif1	93	66.049	Amphiprion_ocellaris
ENSORLG00020001302	rif1	96	72.208	ENSAPEG00000013228	rif1	99	72.208	Amphiprion_percula
ENSORLG00020001302	rif1	99	55.027	ENSATEG00000022887	rif1	99	64.444	Anabas_testudineus
ENSORLG00020001302	rif1	71	48.689	ENSAPLG00000007092	RIF1	73	48.576	Anas_platyrhynchos
ENSORLG00020001302	rif1	54	47.857	ENSACAG00000003714	RIF1	53	47.698	Anolis_carolinensis
ENSORLG00020001302	rif1	67	48.843	ENSANAG00000024840	RIF1	62	48.668	Aotus_nancymaae
ENSORLG00020001302	rif1	92	54.591	ENSAMXG00000010910	rif1	86	54.726	Astyanax_mexicanus
ENSORLG00020001302	rif1	61	48.559	ENSBTAG00000021020	RIF1	60	49.176	Bos_taurus
ENSORLG00020001302	rif1	67	49.354	ENSCJAG00000003138	RIF1	62	48.320	Callithrix_jacchus
ENSORLG00020001302	rif1	69	48.249	ENSCAFG00000005670	RIF1	61	48.346	Canis_familiaris
ENSORLG00020001302	rif1	69	48.249	ENSCAFG00020016401	RIF1	64	48.346	Canis_lupus_dingo
ENSORLG00020001302	rif1	70	46.662	ENSCHIG00000020327	RIF1	65	46.586	Capra_hircus
ENSORLG00020001302	rif1	68	46.371	ENSTSYG00000008861	RIF1	62	46.452	Carlito_syrichta
ENSORLG00020001302	rif1	57	38.900	ENSCAPG00000008957	RIF1	69	38.739	Cavia_aperea
ENSORLG00020001302	rif1	67	47.145	ENSCPOG00000037898	RIF1	64	46.477	Cavia_porcellus
ENSORLG00020001302	rif1	69	46.528	ENSCCAG00000024760	RIF1	64	47.092	Cebus_capucinus
ENSORLG00020001302	rif1	69	48.397	ENSCATG00000033353	RIF1	64	47.771	Cercocebus_atys
ENSORLG00020001302	rif1	65	49.133	ENSCLAG00000001517	RIF1	63	49.132	Chinchilla_lanigera
ENSORLG00020001302	rif1	69	48.317	ENSCSAG00000016089	RIF1	64	47.850	Chlorocebus_sabaeus
ENSORLG00020001302	rif1	64	45.249	ENSCHOG00000007187	RIF1	59	45.249	Choloepus_hoffmanni
ENSORLG00020001302	rif1	69	49.479	ENSCPBG00000025885	RIF1	70	49.678	Chrysemys_picta_bellii
ENSORLG00020001302	rif1	69	47.896	ENSCANG00000028962	RIF1	63	49.248	Colobus_angolensis_palliatus
ENSORLG00020001302	rif1	68	46.454	ENSCGRG00001024589	Rif1	64	47.026	Cricetulus_griseus_chok1gshd
ENSORLG00020001302	rif1	66	47.823	ENSCGRG00000010713	Rif1	63	48.406	Cricetulus_griseus_crigri
ENSORLG00020001302	rif1	96	52.375	ENSCSEG00000003945	rif1	99	52.351	Cynoglossus_semilaevis
ENSORLG00020001302	rif1	96	55.675	ENSCVAG00000022479	rif1	99	54.715	Cyprinodon_variegatus
ENSORLG00020001302	rif1	73	61.562	ENSDARG00000062650	rif1	71	61.562	Danio_rerio
ENSORLG00020001302	rif1	70	47.063	ENSDNOG00000011194	RIF1	62	46.963	Dasypus_novemcinctus
ENSORLG00020001302	rif1	68	45.164	ENSETEG00000012421	RIF1	63	44.880	Echinops_telfairi
ENSORLG00020001302	rif1	59	62.866	ENSEASG00005023434	RIF1	57	62.866	Equus_asinus_asinus
ENSORLG00020001302	rif1	64	55.689	ENSECAG00000012679	RIF1	61	55.689	Equus_caballus
ENSORLG00020001302	rif1	71	61.128	ENSELUG00000006826	rif1	65	60.857	Esox_lucius
ENSORLG00020001302	rif1	67	48.133	ENSFCAG00000029742	RIF1	62	48.390	Felis_catus
ENSORLG00020001302	rif1	67	47.945	ENSFDAG00000006538	RIF1	63	47.809	Fukomys_damarensis
ENSORLG00020001302	rif1	99	56.342	ENSFHEG00000013721	rif1	99	56.509	Fundulus_heteroclitus
ENSORLG00020001302	rif1	68	68.421	ENSGMOG00000003517	rif1	97	68.421	Gadus_morhua
ENSORLG00020001302	rif1	60	47.529	ENSGALG00000012484	RIF1	65	47.619	Gallus_gallus
ENSORLG00020001302	rif1	99	72.383	ENSGAFG00000017196	rif1	99	72.853	Gambusia_affinis
ENSORLG00020001302	rif1	68	47.994	ENSGAGG00000012595	RIF1	71	46.657	Gopherus_agassizii
ENSORLG00020001302	rif1	58	55.087	ENSGGOG00000040178	RIF1	57	55.087	Gorilla_gorilla
ENSORLG00020001302	rif1	99	57.984	ENSHBUG00000007125	rif1	99	58.621	Haplochromis_burtoni
ENSORLG00020001302	rif1	63	48.794	ENSHGLG00100009807	RIF1	63	48.649	Heterocephalus_glaber_male
ENSORLG00020001302	rif1	84	59.379	ENSHCOG00000015943	rif1	75	59.514	Hippocampus_comes
ENSORLG00020001302	rif1	67	61.912	ENSIPUG00000021703	rif1	74	60.606	Ictalurus_punctatus
ENSORLG00020001302	rif1	68	49.120	ENSSTOG00000020712	RIF1	62	48.960	Ictidomys_tridecemlineatus
ENSORLG00020001302	rif1	67	46.454	ENSJJAG00000023000	Rif1	64	46.534	Jaculus_jaculus
ENSORLG00020001302	rif1	99	56.013	ENSKMAG00000002852	rif1	99	56.723	Kryptolebias_marmoratus
ENSORLG00020001302	rif1	93	65.211	ENSLBEG00000023196	rif1	83	64.963	Labrus_bergylta
ENSORLG00020001302	rif1	69	51.522	ENSLACG00000005425	RIF1	78	46.119	Latimeria_chalumnae
ENSORLG00020001302	rif1	83	53.261	ENSLOCG00000002657	rif1	87	53.804	Lepisosteus_oculatus
ENSORLG00020001302	rif1	67	48.757	ENSLAFG00000009796	RIF1	63	48.555	Loxodonta_africana
ENSORLG00020001302	rif1	69	48.478	ENSMFAG00000032233	RIF1	64	47.850	Macaca_fascicularis
ENSORLG00020001302	rif1	69	48.478	ENSMMUG00000008611	RIF1	64	47.850	Macaca_mulatta
ENSORLG00020001302	rif1	69	48.323	ENSMNEG00000031616	RIF1	64	48.115	Macaca_nemestrina
ENSORLG00020001302	rif1	69	48.397	ENSMLEG00000042945	RIF1	64	47.771	Mandrillus_leucophaeus
ENSORLG00020001302	rif1	83	59.643	ENSMAMG00000001745	rif1	82	60.230	Mastacembelus_armatus
ENSORLG00020001302	rif1	95	70.253	ENSMZEG00005020920	rif1	99	70.440	Maylandia_zebra
ENSORLG00020001302	rif1	66	48.462	ENSMGAG00000012732	RIF1	75	48.505	Meleagris_gallopavo
ENSORLG00020001302	rif1	62	59.504	ENSMAUG00000013158	Rif1	62	59.504	Mesocricetus_auratus
ENSORLG00020001302	rif1	67	48.562	ENSMICG00000046127	RIF1	62	48.169	Microcebus_murinus
ENSORLG00020001302	rif1	68	46.148	ENSMOCG00000009381	Rif1	64	46.148	Microtus_ochrogaster
ENSORLG00020001302	rif1	99	51.665	ENSMMOG00000006519	rif1	99	51.786	Mola_mola
ENSORLG00020001302	rif1	71	48.602	ENSMODG00000003703	RIF1	67	48.407	Monodelphis_domestica
ENSORLG00020001302	rif1	78	66.189	ENSMALG00000016759	rif1	85	66.189	Monopterus_albus
ENSORLG00020001302	rif1	68	47.875	MGP_CAROLIEiJ_G0023555	Rif1	64	47.554	Mus_caroli
ENSORLG00020001302	rif1	68	47.570	ENSMUSG00000036202	Rif1	64	47.566	Mus_musculus
ENSORLG00020001302	rif1	68	45.974	MGP_PahariEiJ_G0025006	Rif1	63	45.462	Mus_pahari
ENSORLG00020001302	rif1	68	47.878	MGP_SPRETEiJ_G0024476	Rif1	64	48.157	Mus_spretus
ENSORLG00020001302	rif1	68	47.847	ENSMPUG00000000371	RIF1	63	48.136	Mustela_putorius_furo
ENSORLG00020001302	rif1	56	46.116	ENSMLUG00000003376	RIF1	59	46.418	Myotis_lucifugus
ENSORLG00020001302	rif1	69	48.041	ENSNGAG00000009268	Rif1	66	48.694	Nannospalax_galili
ENSORLG00020001302	rif1	99	55.275	ENSNBRG00000014257	rif1	99	56.709	Neolamprologus_brichardi
ENSORLG00020001302	rif1	67	47.785	ENSNLEG00000010955	RIF1	62	47.248	Nomascus_leucogenys
ENSORLG00020001302	rif1	67	45.696	ENSODEG00000003950	RIF1	63	45.520	Octodon_degus
ENSORLG00020001302	rif1	99	58.149	ENSONIG00000013657	rif1	100	58.149	Oreochromis_niloticus
ENSORLG00020001302	rif1	58	52.757	ENSOANG00000006078	-	55	52.662	Ornithorhynchus_anatinus
ENSORLG00020001302	rif1	69	46.775	ENSOCUG00000017435	RIF1	64	47.340	Oryctolagus_cuniculus
ENSORLG00020001302	rif1	100	96.910	ENSORLG00015000009	rif1	100	96.910	Oryzias_latipes_hsok
ENSORLG00020001302	rif1	100	76.133	ENSOMEG00000021513	rif1	100	76.305	Oryzias_melastigma
ENSORLG00020001302	rif1	67	48.405	ENSOGAG00000006141	RIF1	62	48.246	Otolemur_garnettii
ENSORLG00020001302	rif1	70	47.500	ENSOARG00000008930	RIF1	65	47.424	Ovis_aries
ENSORLG00020001302	rif1	69	48.524	ENSPPAG00000023754	RIF1	64	47.937	Pan_paniscus
ENSORLG00020001302	rif1	67	47.975	ENSPPRG00000003618	RIF1	62	48.166	Panthera_pardus
ENSORLG00020001302	rif1	67	47.975	ENSPTIG00000020652	RIF1	62	48.166	Panthera_tigris_altaica
ENSORLG00020001302	rif1	69	48.524	ENSPTRG00000012534	RIF1	64	47.937	Pan_troglodytes
ENSORLG00020001302	rif1	69	48.478	ENSPANG00000008525	RIF1	64	47.850	Papio_anubis
ENSORLG00020001302	rif1	77	57.423	ENSPKIG00000004267	rif1	82	52.416	Paramormyrops_kingsleyae
ENSORLG00020001302	rif1	79	61.518	ENSPMGG00000016141	rif1	87	61.518	Periophthalmus_magnuspinnatus
ENSORLG00020001302	rif1	67	48.324	ENSPEMG00000000446	Rif1	64	48.329	Peromyscus_maniculatus_bairdii
ENSORLG00020001302	rif1	67	49.200	ENSPCIG00000009185	RIF1	66	48.999	Phascolarctos_cinereus
ENSORLG00020001302	rif1	99	56.131	ENSPFOG00000017804	rif1	99	57.329	Poecilia_formosa
ENSORLG00020001302	rif1	92	54.868	ENSPFOG00000000554	-	99	56.216	Poecilia_formosa
ENSORLG00020001302	rif1	95	67.684	ENSPLAG00000017945	rif1	98	66.826	Poecilia_latipinna
ENSORLG00020001302	rif1	89	54.465	ENSPMEG00000006897	-	99	55.363	Poecilia_mexicana
ENSORLG00020001302	rif1	90	73.619	ENSPREG00000018052	rif1	99	64.604	Poecilia_reticulata
ENSORLG00020001302	rif1	69	48.806	ENSPPYG00000012846	RIF1	64	48.259	Pongo_abelii
ENSORLG00020001302	rif1	70	48.166	ENSPCOG00000027888	RIF1	64	47.898	Propithecus_coquereli
ENSORLG00020001302	rif1	59	56.823	ENSPVAG00000014276	RIF1	57	56.823	Pteropus_vampyrus
ENSORLG00020001302	rif1	95	70.533	ENSPNYG00000012940	rif1	99	70.533	Pundamilia_nyererei
ENSORLG00020001302	rif1	76	59.094	ENSPNAG00000016685	rif1	81	55.874	Pygocentrus_nattereri
ENSORLG00020001302	rif1	68	46.099	ENSRNOG00000054901	Rif1	64	45.976	Rattus_norvegicus
ENSORLG00020001302	rif1	69	47.766	ENSRBIG00000003704	RIF1	64	48.392	Rhinopithecus_bieti
ENSORLG00020001302	rif1	69	48.237	ENSRROG00000028206	RIF1	64	47.809	Rhinopithecus_roxellana
ENSORLG00020001302	rif1	65	51.948	ENSSBOG00000029530	RIF1	62	51.948	Saimiri_boliviensis_boliviensis
ENSORLG00020001302	rif1	67	49.029	ENSSHAG00000018552	RIF1	64	48.988	Sarcophilus_harrisii
ENSORLG00020001302	rif1	68	60.856	ENSSFOG00015021539	rif1	85	57.784	Scleropages_formosus
ENSORLG00020001302	rif1	78	69.914	ENSSMAG00000011704	rif1	70	70.487	Scophthalmus_maximus
ENSORLG00020001302	rif1	99	57.539	ENSSDUG00000015632	rif1	99	57.759	Seriola_dumerili
ENSORLG00020001302	rif1	99	57.477	ENSSLDG00000019531	rif1	99	57.396	Seriola_lalandi_dorsalis
ENSORLG00020001302	rif1	52	49.832	ENSSPUG00000003062	RIF1	52	49.284	Sphenodon_punctatus
ENSORLG00020001302	rif1	66	69.112	ENSSPAG00000018359	rif1	91	69.112	Stegastes_partitus
ENSORLG00020001302	rif1	68	49.161	ENSSSCG00000016395	RIF1	63	49.322	Sus_scrofa
ENSORLG00020001302	rif1	88	62.735	ENSTRUG00000015808	rif1	97	71.865	Takifugu_rubripes
ENSORLG00020001302	rif1	74	63.557	ENSTNIG00000011538	rif1	99	50.642	Tetraodon_nigroviridis
ENSORLG00020001302	rif1	63	50.713	ENSTBEG00000016082	RIF1	57	50.713	Tupaia_belangeri
ENSORLG00020001302	rif1	68	48.636	ENSTTRG00000011190	RIF1	63	48.276	Tursiops_truncatus
ENSORLG00020001302	rif1	58	46.302	ENSUAMG00000026385	RIF1	59	46.289	Ursus_americanus
ENSORLG00020001302	rif1	68	47.615	ENSUMAG00000000337	RIF1	63	47.623	Ursus_maritimus
ENSORLG00020001302	rif1	70	48.023	ENSVPAG00000002162	RIF1	64	47.942	Vicugna_pacos
ENSORLG00020001302	rif1	70	48.702	ENSVVUG00000011293	RIF1	65	48.308	Vulpes_vulpes
ENSORLG00020001302	rif1	68	46.764	ENSXETG00000004530	rif1	66	47.049	Xenopus_tropicalis
ENSORLG00020001302	rif1	99	51.473	ENSXMAG00000000506	rif1	99	52.273	Xiphophorus_maculatus