EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020001530 (Gene tree)
Gene ID: -
Gene Symbol: prpf18
Alias: -
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 14340 bases
Position: chr6:18200309-18214648
Accession: 101160652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020021624	PRP4	PF08799.11	1.8e-13	1	1
ENSORLP00020021627	PRP4	PF08799.11	2.1e-13	1	1
ENSORLP00020000819	PRP4	PF08799.11	2.2e-13	1	1
ENSORLP00020021627	Prp18	PF02840.15	4.2e-61	1	1
ENSORLP00020000819	Prp18	PF02840.15	4.4e-61	1	1
ENSORLP00020021624	Prp18	PF02840.15	9.3e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020014088	-	963	-	ENSORLP00020021624	320 (aa)	-	-
ENSORLT00020014075	-	4316	-	ENSORLP00020021627	341 (aa)	XP_004069739	H2M396
ENSORLT00020014067	-	4343	-	ENSORLP00020000819	350 (aa)	XP_023811161	UPI0002A4C785

Gene Model

Click here to download ENSORLG00020001530's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020001530's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020001530	prpf18	100	84.503	ENSG00000165630	PRPF18	100	84.503	Homo_sapiens
ENSORLG00020001530	prpf18	100	93.548	ENSAPOG00000024177	prpf18	100	93.548	Acanthochromis_polyacanthus
ENSORLG00020001530	prpf18	100	83.918	ENSAMEG00000013591	-	100	83.918	Ailuropoda_melanoleuca
ENSORLG00020001530	prpf18	100	92.962	ENSACIG00000001186	prpf18	100	92.962	Amphilophus_citrinellus
ENSORLG00020001530	prpf18	98	93.713	ENSAOCG00000006572	prpf18	94	93.567	Amphiprion_ocellaris
ENSORLG00020001530	prpf18	100	93.842	ENSAPEG00000004564	prpf18	100	93.842	Amphiprion_percula
ENSORLG00020001530	prpf18	100	92.962	ENSATEG00000000303	prpf18	100	92.962	Anabas_testudineus
ENSORLG00020001530	prpf18	99	81.471	ENSAPLG00000003387	-	99	81.471	Anas_platyrhynchos
ENSORLG00020001530	prpf18	100	84.302	ENSACAG00000000818	-	100	84.302	Anolis_carolinensis
ENSORLG00020001530	prpf18	100	84.211	ENSANAG00000037445	-	100	84.211	Aotus_nancymaae
ENSORLG00020001530	prpf18	100	92.962	ENSACLG00000026296	prpf18	100	92.962	Astatotilapia_calliptera
ENSORLG00020001530	prpf18	100	88.571	ENSAMXG00000012848	prpf18	100	88.571	Astyanax_mexicanus
ENSORLG00020001530	prpf18	100	83.918	ENSBTAG00000017244	PRPF18	100	83.918	Bos_taurus
ENSORLG00020001530	prpf18	98	40.230	WBGene00009320	F32B6.3	97	40.058	Caenorhabditis_elegans
ENSORLG00020001530	prpf18	100	84.211	ENSCJAG00000009432	-	100	84.211	Callithrix_jacchus
ENSORLG00020001530	prpf18	100	83.918	ENSCAFG00000004735	-	100	83.918	Canis_familiaris
ENSORLG00020001530	prpf18	100	83.918	ENSCAFG00020007712	-	100	83.918	Canis_lupus_dingo
ENSORLG00020001530	prpf18	100	83.918	ENSCHIG00000000499	-	100	83.918	Capra_hircus
ENSORLG00020001530	prpf18	100	83.626	ENSTSYG00000003517	-	100	83.626	Carlito_syrichta
ENSORLG00020001530	prpf18	100	84.503	ENSCPOG00000021069	-	100	84.503	Cavia_porcellus
ENSORLG00020001530	prpf18	100	84.211	ENSCCAG00000036822	-	100	84.211	Cebus_capucinus
ENSORLG00020001530	prpf18	100	73.684	ENSCATG00000016633	-	100	73.684	Cercocebus_atys
ENSORLG00020001530	prpf18	100	83.918	ENSCLAG00000011770	-	100	83.918	Chinchilla_lanigera
ENSORLG00020001530	prpf18	100	82.906	ENSCSAG00000013109	-	100	82.906	Chlorocebus_sabaeus
ENSORLG00020001530	prpf18	100	79.213	ENSCPBG00000003100	-	100	80.056	Chrysemys_picta_bellii
ENSORLG00020001530	prpf18	99	54.706	ENSCING00000020481	-	97	54.179	Ciona_intestinalis
ENSORLG00020001530	prpf18	99	54.360	ENSCSAVG00000010546	-	99	53.959	Ciona_savignyi
ENSORLG00020001530	prpf18	100	84.503	ENSCANG00000034900	-	100	84.503	Colobus_angolensis_palliatus
ENSORLG00020001530	prpf18	100	84.503	ENSCGRG00001023665	Prpf18	100	84.503	Cricetulus_griseus_chok1gshd
ENSORLG00020001530	prpf18	100	84.503	ENSCGRG00000014690	Prpf18	100	84.503	Cricetulus_griseus_crigri
ENSORLG00020001530	prpf18	100	90.616	ENSCSEG00000005536	prpf18	100	90.373	Cynoglossus_semilaevis
ENSORLG00020001530	prpf18	100	90.909	ENSCVAG00000012401	prpf18	100	90.909	Cyprinodon_variegatus
ENSORLG00020001530	prpf18	100	89.181	ENSDARG00000058306	prpf18	100	89.181	Danio_rerio
ENSORLG00020001530	prpf18	100	83.918	ENSDNOG00000035607	-	100	83.918	Dasypus_novemcinctus
ENSORLG00020001530	prpf18	100	83.626	ENSDORG00000000858	Prpf18	100	83.626	Dipodomys_ordii
ENSORLG00020001530	prpf18	99	51.183	FBgn0027784	Prp18	98	51.183	Drosophila_melanogaster
ENSORLG00020001530	prpf18	100	76.608	ENSETEG00000015060	-	100	76.608	Echinops_telfairi
ENSORLG00020001530	prpf18	100	70.605	ENSEBUG00000016502	prpf18	99	69.653	Eptatretus_burgeri
ENSORLG00020001530	prpf18	100	84.211	ENSEASG00005019373	-	100	84.211	Equus_asinus_asinus
ENSORLG00020001530	prpf18	100	84.211	ENSECAG00000006997	PRPF18	100	84.211	Equus_caballus
ENSORLG00020001530	prpf18	92	50.633	ENSEEUG00000001171	-	79	100.000	Erinaceus_europaeus
ENSORLG00020001530	prpf18	100	87.216	ENSELUG00000022190	prpf18	100	87.216	Esox_lucius
ENSORLG00020001530	prpf18	100	83.626	ENSFCAG00000004436	-	100	83.626	Felis_catus
ENSORLG00020001530	prpf18	93	79.692	ENSFALG00000001912	-	97	80.000	Ficedula_albicollis
ENSORLG00020001530	prpf18	94	86.250	ENSFDAG00000014026	-	100	86.250	Fukomys_damarensis
ENSORLG00020001530	prpf18	99	56.812	ENSFDAG00000010713	-	97	56.812	Fukomys_damarensis
ENSORLG00020001530	prpf18	80	95.238	ENSFHEG00000020125	prpf18	98	95.131	Fundulus_heteroclitus
ENSORLG00020001530	prpf18	99	87.059	ENSGMOG00000012210	prpf18	99	87.059	Gadus_morhua
ENSORLG00020001530	prpf18	100	82.456	ENSGALG00000043593	-	100	82.456	Gallus_gallus
ENSORLG00020001530	prpf18	100	90.616	ENSGAFG00000006034	prpf18	100	90.616	Gambusia_affinis
ENSORLG00020001530	prpf18	100	88.856	ENSGACG00000012232	prpf18	100	88.856	Gasterosteus_aculeatus
ENSORLG00020001530	prpf18	100	83.041	ENSGAGG00000016878	-	100	83.041	Gopherus_agassizii
ENSORLG00020001530	prpf18	92	83.544	ENSGGOG00000025188	-	96	83.544	Gorilla_gorilla
ENSORLG00020001530	prpf18	100	92.962	ENSHBUG00000010264	prpf18	100	92.962	Haplochromis_burtoni
ENSORLG00020001530	prpf18	100	83.918	ENSHGLG00000018534	PRPF18	100	83.918	Heterocephalus_glaber_female
ENSORLG00020001530	prpf18	94	85.938	ENSHGLG00100012161	-	98	85.938	Heterocephalus_glaber_male
ENSORLG00020001530	prpf18	100	92.962	ENSHCOG00000015987	prpf18	100	92.962	Hippocampus_comes
ENSORLG00020001530	prpf18	100	84.136	ENSIPUG00000007432	prpf18	100	83.853	Ictalurus_punctatus
ENSORLG00020001530	prpf18	100	83.918	ENSSTOG00000008735	-	100	83.918	Ictidomys_tridecemlineatus
ENSORLG00020001530	prpf18	100	84.503	ENSJJAG00000024041	-	100	84.503	Jaculus_jaculus
ENSORLG00020001530	prpf18	100	67.290	ENSJJAG00000015191	-	100	67.290	Jaculus_jaculus
ENSORLG00020001530	prpf18	100	91.875	ENSKMAG00000012124	prpf18	100	91.875	Kryptolebias_marmoratus
ENSORLG00020001530	prpf18	98	89.286	ENSLBEG00000028466	prpf18	99	89.286	Labrus_bergylta
ENSORLG00020001530	prpf18	100	83.041	ENSLACG00000009885	prpf18	100	83.626	Latimeria_chalumnae
ENSORLG00020001530	prpf18	100	88.304	ENSLOCG00000016736	prpf18	100	88.304	Lepisosteus_oculatus
ENSORLG00020001530	prpf18	100	84.503	ENSLAFG00000007753	-	100	84.503	Loxodonta_africana
ENSORLG00020001530	prpf18	100	84.503	ENSMFAG00000000540	-	100	84.503	Macaca_fascicularis
ENSORLG00020001530	prpf18	100	84.503	ENSMMUG00000015071	PRPF18	99	88.199	Macaca_mulatta
ENSORLG00020001530	prpf18	100	84.503	ENSMNEG00000024679	-	100	84.503	Macaca_nemestrina
ENSORLG00020001530	prpf18	100	69.298	ENSMLEG00000031715	-	100	69.298	Mandrillus_leucophaeus
ENSORLG00020001530	prpf18	100	92.962	ENSMAMG00000006610	prpf18	100	92.962	Mastacembelus_armatus
ENSORLG00020001530	prpf18	100	92.962	ENSMZEG00005019392	prpf18	100	92.962	Maylandia_zebra
ENSORLG00020001530	prpf18	100	82.456	ENSMGAG00000005023	-	100	82.456	Meleagris_gallopavo
ENSORLG00020001530	prpf18	100	84.211	ENSMICG00000006572	-	100	84.211	Microcebus_murinus
ENSORLG00020001530	prpf18	100	84.503	ENSMOCG00000021468	Prpf18	100	84.503	Microtus_ochrogaster
ENSORLG00020001530	prpf18	100	92.669	ENSMMOG00000013012	prpf18	100	92.669	Mola_mola
ENSORLG00020001530	prpf18	99	77.299	ENSMODG00000016902	-	95	77.299	Monodelphis_domestica
ENSORLG00020001530	prpf18	100	76.316	ENSMODG00000024043	-	100	76.316	Monodelphis_domestica
ENSORLG00020001530	prpf18	100	84.928	ENSMALG00000005486	prpf18	100	85.217	Monopterus_albus
ENSORLG00020001530	prpf18	100	85.088	MGP_CAROLIEiJ_G0023143	Prpf18	100	94.521	Mus_caroli
ENSORLG00020001530	prpf18	100	85.088	ENSMUSG00000039449	Prpf18	100	94.521	Mus_musculus
ENSORLG00020001530	prpf18	100	84.795	MGP_PahariEiJ_G0019203	Prpf18	100	94.521	Mus_pahari
ENSORLG00020001530	prpf18	100	84.795	MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	Mus_spretus
ENSORLG00020001530	prpf18	100	83.626	ENSMPUG00000000938	-	100	83.626	Mustela_putorius_furo
ENSORLG00020001530	prpf18	100	84.795	ENSMLUG00000009200	-	100	84.795	Myotis_lucifugus
ENSORLG00020001530	prpf18	100	84.503	ENSNGAG00000012500	-	100	84.503	Nannospalax_galili
ENSORLG00020001530	prpf18	68	81.897	ENSNGAG00000023550	-	83	81.897	Nannospalax_galili
ENSORLG00020001530	prpf18	100	92.962	ENSNBRG00000001778	prpf18	100	92.962	Neolamprologus_brichardi
ENSORLG00020001530	prpf18	100	84.503	ENSNLEG00000012186	-	100	84.503	Nomascus_leucogenys
ENSORLG00020001530	prpf18	76	72.973	ENSMEUG00000005032	-	75	72.973	Notamacropus_eugenii
ENSORLG00020001530	prpf18	77	65.283	ENSOPRG00000002153	-	100	65.283	Ochotona_princeps
ENSORLG00020001530	prpf18	100	83.918	ENSODEG00000003770	-	100	83.918	Octodon_degus
ENSORLG00020001530	prpf18	98	92.814	ENSONIG00000014854	prpf18	96	92.814	Oreochromis_niloticus
ENSORLG00020001530	prpf18	100	83.626	ENSOANG00000015404	-	100	83.626	Ornithorhynchus_anatinus
ENSORLG00020001530	prpf18	100	84.211	ENSOCUG00000027756	-	96	85.321	Oryctolagus_cuniculus
ENSORLG00020001530	prpf18	100	100.000	ENSORLG00000010293	prpf18	100	100.000	Oryzias_latipes
ENSORLG00020001530	prpf18	100	99.429	ENSORLG00015013705	prpf18	100	99.429	Oryzias_latipes_hsok
ENSORLG00020001530	prpf18	100	97.361	ENSOMEG00000009167	prpf18	100	97.361	Oryzias_melastigma
ENSORLG00020001530	prpf18	100	83.626	ENSOGAG00000007294	-	100	83.626	Otolemur_garnettii
ENSORLG00020001530	prpf18	100	82.336	ENSOARG00000006243	-	100	82.336	Ovis_aries
ENSORLG00020001530	prpf18	100	84.503	ENSPPAG00000041959	-	100	84.503	Pan_paniscus
ENSORLG00020001530	prpf18	100	83.626	ENSPPRG00000000107	-	100	83.626	Panthera_pardus
ENSORLG00020001530	prpf18	100	83.626	ENSPTIG00000021094	-	100	83.626	Panthera_tigris_altaica
ENSORLG00020001530	prpf18	100	84.503	ENSPTRG00000002306	PRPF18	100	84.503	Pan_troglodytes
ENSORLG00020001530	prpf18	100	84.211	ENSPANG00000023346	-	100	84.211	Papio_anubis
ENSORLG00020001530	prpf18	100	85.755	ENSPKIG00000014128	prpf18	96	85.755	Paramormyrops_kingsleyae
ENSORLG00020001530	prpf18	100	83.333	ENSPSIG00000016064	-	100	83.333	Pelodiscus_sinensis
ENSORLG00020001530	prpf18	100	89.877	ENSPMGG00000016486	prpf18	100	89.877	Periophthalmus_magnuspinnatus
ENSORLG00020001530	prpf18	100	84.795	ENSPEMG00000013704	Prpf18	100	84.795	Peromyscus_maniculatus_bairdii
ENSORLG00020001530	prpf18	100	73.775	ENSPMAG00000000204	prpf18	100	73.775	Petromyzon_marinus
ENSORLG00020001530	prpf18	92	82.911	ENSPCIG00000012963	-	99	82.911	Phascolarctos_cinereus
ENSORLG00020001530	prpf18	100	89.429	ENSPFOG00000017611	prpf18	100	89.429	Poecilia_formosa
ENSORLG00020001530	prpf18	100	90.029	ENSPLAG00000000369	prpf18	100	90.029	Poecilia_latipinna
ENSORLG00020001530	prpf18	100	90.323	ENSPMEG00000005183	prpf18	100	90.323	Poecilia_mexicana
ENSORLG00020001530	prpf18	100	90.616	ENSPREG00000015232	prpf18	100	90.616	Poecilia_reticulata
ENSORLG00020001530	prpf18	100	84.211	ENSPPYG00000002101	PRPF18	100	84.211	Pongo_abelii
ENSORLG00020001530	prpf18	100	66.667	ENSPCAG00000010833	-	100	66.667	Procavia_capensis
ENSORLG00020001530	prpf18	100	80.117	ENSPCOG00000013057	-	100	80.117	Propithecus_coquereli
ENSORLG00020001530	prpf18	100	52.339	ENSPVAG00000002947	-	100	52.339	Pteropus_vampyrus
ENSORLG00020001530	prpf18	100	92.669	ENSPNYG00000003554	prpf18	100	92.669	Pundamilia_nyererei
ENSORLG00020001530	prpf18	100	88.319	ENSPNAG00000023151	prpf18	100	88.319	Pygocentrus_nattereri
ENSORLG00020001530	prpf18	100	84.503	ENSRNOG00000018396	Prpf18	100	84.503	Rattus_norvegicus
ENSORLG00020001530	prpf18	100	85.625	ENSRBIG00000028028	-	100	85.625	Rhinopithecus_bieti
ENSORLG00020001530	prpf18	100	84.503	ENSRROG00000040695	-	100	84.503	Rhinopithecus_roxellana
ENSORLG00020001530	prpf18	100	84.211	ENSSBOG00000034482	-	100	84.211	Saimiri_boliviensis_boliviensis
ENSORLG00020001530	prpf18	100	83.918	ENSSHAG00000016463	-	100	83.918	Sarcophilus_harrisii
ENSORLG00020001530	prpf18	100	69.591	ENSSHAG00000009669	-	100	69.591	Sarcophilus_harrisii
ENSORLG00020001530	prpf18	74	49.801	ENSSFOG00015021154	-	95	49.004	Scleropages_formosus
ENSORLG00020001530	prpf18	100	86.769	ENSSFOG00015022118	prpf18	100	86.769	Scleropages_formosus
ENSORLG00020001530	prpf18	100	90.616	ENSSMAG00000005308	prpf18	100	90.616	Scophthalmus_maximus
ENSORLG00020001530	prpf18	100	94.428	ENSSDUG00000015428	prpf18	100	94.428	Seriola_dumerili
ENSORLG00020001530	prpf18	100	94.135	ENSSLDG00000023989	prpf18	100	94.135	Seriola_lalandi_dorsalis
ENSORLG00020001530	prpf18	100	55.848	ENSSARG00000005307	-	100	55.848	Sorex_araneus
ENSORLG00020001530	prpf18	100	83.626	ENSSPUG00000002619	-	100	83.626	Sphenodon_punctatus
ENSORLG00020001530	prpf18	100	94.135	ENSSPAG00000019502	prpf18	100	94.135	Stegastes_partitus
ENSORLG00020001530	prpf18	100	85.312	ENSSSCG00000026354	-	100	85.312	Sus_scrofa
ENSORLG00020001530	prpf18	100	82.749	ENSTGUG00000002286	-	100	82.749	Taeniopygia_guttata
ENSORLG00020001530	prpf18	100	89.150	ENSTRUG00000011278	prpf18	100	89.150	Takifugu_rubripes
ENSORLG00020001530	prpf18	100	89.736	ENSTNIG00000000911	prpf18	100	89.736	Tetraodon_nigroviridis
ENSORLG00020001530	prpf18	80	98.718	ENSTBEG00000013011	-	79	98.718	Tupaia_belangeri
ENSORLG00020001530	prpf18	100	84.795	ENSTTRG00000011117	PRPF18	100	84.795	Tursiops_truncatus
ENSORLG00020001530	prpf18	91	86.817	ENSUAMG00000001815	-	93	86.817	Ursus_americanus
ENSORLG00020001530	prpf18	100	78.947	ENSUMAG00000012329	-	100	78.947	Ursus_maritimus
ENSORLG00020001530	prpf18	100	78.655	ENSVPAG00000011486	-	100	78.655	Vicugna_pacos
ENSORLG00020001530	prpf18	100	83.918	ENSVVUG00000005453	-	100	83.918	Vulpes_vulpes
ENSORLG00020001530	prpf18	100	75.942	ENSXETG00000024057	prpf18	100	75.652	Xenopus_tropicalis
ENSORLG00020001530	prpf18	100	90.087	ENSXCOG00000020414	prpf18	100	90.087	Xiphophorus_couchianus
ENSORLG00020001530	prpf18	100	90.616	ENSXMAG00000004713	prpf18	91	90.616	Xiphophorus_maculatus