EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020001610 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 20532 bases
Position: chr21:18564417-18584948
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020021687	ResIII	PF04851.15	8.5e-07	1	1
ENSORLP00020021696	ResIII	PF04851.15	8.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020013934	SMARCAL1-202	6473	-	ENSORLP00020021687	893 (aa)	-	-
ENSORLT00020013923	SMARCAL1-201	6366	-	ENSORLP00020021696	893 (aa)	-	-

Gene Model

Click here to download ENSORLG00020001610's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020001610's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020001610	SMARCAL1	96	50.913	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSORLG00020001610	SMARCAL1	99	74.373	ENSAPOG00000020156	SMARCAL1	99	74.591	Acanthochromis_polyacanthus
ENSORLG00020001610	SMARCAL1	92	73.406	ENSACIG00000001500	smarcal1	97	73.406	Amphilophus_citrinellus
ENSORLG00020001610	SMARCAL1	98	75.528	ENSAOCG00000014266	SMARCAL1	99	75.528	Amphiprion_ocellaris
ENSORLG00020001610	SMARCAL1	99	74.565	ENSAPEG00000015861	SMARCAL1	99	74.565	Amphiprion_percula
ENSORLG00020001610	SMARCAL1	100	73.644	ENSATEG00000020624	SMARCAL1	100	73.644	Anabas_testudineus
ENSORLG00020001610	SMARCAL1	94	54.577	ENSAPLG00000009864	SMARCAL1	84	54.608	Anas_platyrhynchos
ENSORLG00020001610	SMARCAL1	78	63.390	ENSACAG00000004612	SMARCAL1	71	63.390	Anolis_carolinensis
ENSORLG00020001610	SMARCAL1	99	72.013	ENSACLG00000015990	SMARCAL1	99	72.788	Astatotilapia_calliptera
ENSORLG00020001610	SMARCAL1	100	64.972	ENSAMXG00000003350	smarcal1	99	64.972	Astyanax_mexicanus
ENSORLG00020001610	SMARCAL1	100	55.079	ENSCPBG00000013599	SMARCAL1	99	55.079	Chrysemys_picta_bellii
ENSORLG00020001610	SMARCAL1	77	49.060	ENSCING00000009308	-	100	49.060	Ciona_intestinalis
ENSORLG00020001610	SMARCAL1	97	70.932	ENSCSEG00000010785	SMARCAL1	99	70.932	Cynoglossus_semilaevis
ENSORLG00020001610	SMARCAL1	100	71.207	ENSCVAG00000018780	SMARCAL1	100	71.207	Cyprinodon_variegatus
ENSORLG00020001610	SMARCAL1	65	55.153	ENSEBUG00000011906	SMARCAL1	99	46.379	Eptatretus_burgeri
ENSORLG00020001610	SMARCAL1	78	74.253	ENSELUG00000010440	-	95	71.049	Esox_lucius
ENSORLG00020001610	SMARCAL1	80	61.687	ENSFALG00000003981	SMARCAL1	74	61.687	Ficedula_albicollis
ENSORLG00020001610	SMARCAL1	100	71.758	ENSFHEG00000008380	SMARCAL1	100	71.758	Fundulus_heteroclitus
ENSORLG00020001610	SMARCAL1	61	73.759	ENSGMOG00000010034	smarcal1	91	73.759	Gadus_morhua
ENSORLG00020001610	SMARCAL1	96	52.604	ENSGALG00000011475	RPL37A	96	52.604	Gallus_gallus
ENSORLG00020001610	SMARCAL1	87	80.374	ENSGACG00000006073	SMARCAL1	100	82.682	Gasterosteus_aculeatus
ENSORLG00020001610	SMARCAL1	92	64.733	ENSGAGG00000015660	SMARCAL1	99	64.733	Gopherus_agassizii
ENSORLG00020001610	SMARCAL1	99	72.677	ENSHBUG00000002973	smarcal1	99	72.898	Haplochromis_burtoni
ENSORLG00020001610	SMARCAL1	95	68.287	ENSHCOG00000017921	smarcal1	98	68.287	Hippocampus_comes
ENSORLG00020001610	SMARCAL1	97	75.028	ENSKMAG00000012023	SMARCAL1	100	75.482	Kryptolebias_marmoratus
ENSORLG00020001610	SMARCAL1	92	72.356	ENSLBEG00000022915	smarcal1	99	72.356	Labrus_bergylta
ENSORLG00020001610	SMARCAL1	90	71.780	ENSLBEG00000003493	smarcal1	100	72.014	Labrus_bergylta
ENSORLG00020001610	SMARCAL1	93	56.818	ENSLACG00000010974	SMARCAL1	99	49.642	Latimeria_chalumnae
ENSORLG00020001610	SMARCAL1	92	63.282	ENSLOCG00000009637	smarcal1	99	63.282	Lepisosteus_oculatus
ENSORLG00020001610	SMARCAL1	98	75.000	ENSMAMG00000000828	SMARCAL1	99	75.000	Mastacembelus_armatus
ENSORLG00020001610	SMARCAL1	99	71.903	ENSMZEG00005007660	SMARCAL1	99	72.677	Maylandia_zebra
ENSORLG00020001610	SMARCAL1	96	54.235	ENSMGAG00000011658	SMARCAL1	96	54.235	Meleagris_gallopavo
ENSORLG00020001610	SMARCAL1	92	70.510	ENSMMOG00000003842	smarcal1	94	70.290	Mola_mola
ENSORLG00020001610	SMARCAL1	97	50.849	ENSMODG00000015544	SMARCAL1	97	50.849	Monodelphis_domestica
ENSORLG00020001610	SMARCAL1	77	82.489	ENSNBRG00000016273	smarcal1	97	71.841	Neolamprologus_brichardi
ENSORLG00020001610	SMARCAL1	92	52.045	ENSMEUG00000004395	SMARCAL1	100	52.045	Notamacropus_eugenii
ENSORLG00020001610	SMARCAL1	99	73.444	ENSONIG00000009036	smarcal1	100	82.267	Oreochromis_niloticus
ENSORLG00020001610	SMARCAL1	100	98.320	ENSORLG00000016455	SMARCAL1	100	98.320	Oryzias_latipes
ENSORLG00020001610	SMARCAL1	100	98.768	ENSORLG00015001865	SMARCAL1	100	98.768	Oryzias_latipes_hsok
ENSORLG00020001610	SMARCAL1	100	90.594	ENSOMEG00000001845	smarcal1	100	90.594	Oryzias_melastigma
ENSORLG00020001610	SMARCAL1	100	68.053	ENSPMGG00000019092	SMARCAL1	100	68.231	Periophthalmus_magnuspinnatus
ENSORLG00020001610	SMARCAL1	95	52.055	ENSPCIG00000022514	SMARCAL1	99	50.432	Phascolarctos_cinereus
ENSORLG00020001610	SMARCAL1	100	71.837	ENSPFOG00000000560	SMARCAL1	100	71.837	Poecilia_formosa
ENSORLG00020001610	SMARCAL1	100	71.837	ENSPMEG00000018146	SMARCAL1	100	71.837	Poecilia_mexicana
ENSORLG00020001610	SMARCAL1	60	86.111	ENSPREG00000009591	SMARCAL1	95	86.111	Poecilia_reticulata
ENSORLG00020001610	SMARCAL1	98	65.614	ENSPNAG00000014900	smarcal1	92	66.098	Pygocentrus_nattereri
ENSORLG00020001610	SMARCAL1	97	51.045	ENSSHAG00000013538	SMARCAL1	97	51.045	Sarcophilus_harrisii
ENSORLG00020001610	SMARCAL1	100	70.789	ENSSMAG00000010427	SMARCAL1	100	70.789	Scophthalmus_maximus
ENSORLG00020001610	SMARCAL1	97	73.579	ENSSDUG00000017470	SMARCAL1	95	74.247	Seriola_dumerili
ENSORLG00020001610	SMARCAL1	100	72.078	ENSSLDG00000007224	SMARCAL1	100	72.727	Seriola_lalandi_dorsalis
ENSORLG00020001610	SMARCAL1	85	61.460	ENSSPUG00000015369	SMARCAL1	78	61.460	Sphenodon_punctatus
ENSORLG00020001610	SMARCAL1	83	84.480	ENSSPAG00000003742	smarcal1	99	76.236	Stegastes_partitus
ENSORLG00020001610	SMARCAL1	77	57.308	ENSSSCG00000035501	SMARCAL1	76	57.308	Sus_scrofa
ENSORLG00020001610	SMARCAL1	77	61.584	ENSTGUG00000005079	SMARCAL1	99	61.584	Taeniopygia_guttata
ENSORLG00020001610	SMARCAL1	98	62.656	ENSTRUG00000010701	SMARCAL1	99	62.656	Takifugu_rubripes
ENSORLG00020001610	SMARCAL1	79	51.549	ENSTTRG00000009001	SMARCAL1	74	51.549	Tursiops_truncatus
ENSORLG00020001610	SMARCAL1	96	56.850	ENSXETG00000000465	smarcal1	97	56.850	Xenopus_tropicalis