EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020001746 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 13069 bases
Position: chr21:169874-182942
Accession: 101159486
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020001025	SF3b1	PF08920.10	3.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020013707	-	4670	XM_004085368	ENSORLP00020001025	1314 (aa)	XP_004085416	UPI0002A4CCC6
ENSORLT00020013727	-	750	-	ENSORLP00020021774	249 (aa)	-	-

Gene Model

Click here to download ENSORLG00020001746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020001746's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020001746	sf3b1	100	93.389	ENSG00000115524	SF3B1	100	93.389	Homo_sapiens
ENSORLG00020001746	sf3b1	100	97.947	ENSAPOG00000011894	sf3b1	100	97.947	Acanthochromis_polyacanthus
ENSORLG00020001746	sf3b1	99	93.272	ENSAMEG00000013809	SF3B1	99	93.272	Ailuropoda_melanoleuca
ENSORLG00020001746	sf3b1	100	96.880	ENSACIG00000020910	sf3b1	97	96.880	Amphilophus_citrinellus
ENSORLG00020001746	sf3b1	100	97.947	ENSAOCG00000004478	sf3b1	100	97.947	Amphiprion_ocellaris
ENSORLG00020001746	sf3b1	100	97.947	ENSAPEG00000012937	sf3b1	100	97.947	Amphiprion_percula
ENSORLG00020001746	sf3b1	100	97.869	ENSATEG00000020435	sf3b1	100	97.869	Anabas_testudineus
ENSORLG00020001746	sf3b1	99	93.410	ENSAPLG00000003993	SF3B1	99	93.410	Anas_platyrhynchos
ENSORLG00020001746	sf3b1	100	93.308	ENSACAG00000009612	SF3B1	100	93.308	Anolis_carolinensis
ENSORLG00020001746	sf3b1	100	93.389	ENSANAG00000021577	SF3B1	100	94.777	Aotus_nancymaae
ENSORLG00020001746	sf3b1	100	97.032	ENSACLG00000023470	sf3b1	100	97.032	Astatotilapia_calliptera
ENSORLG00020001746	sf3b1	100	96.049	ENSAMXG00000002219	sf3b1	100	96.049	Astyanax_mexicanus
ENSORLG00020001746	sf3b1	100	93.389	ENSBTAG00000008915	SF3B1	100	93.389	Bos_taurus
ENSORLG00020001746	sf3b1	98	65.344	WBGene00011605	sftb-1	97	65.419	Caenorhabditis_elegans
ENSORLG00020001746	sf3b1	100	93.389	ENSCJAG00000003902	SF3B1	100	93.389	Callithrix_jacchus
ENSORLG00020001746	sf3b1	100	93.389	ENSCAFG00000010826	SF3B1	100	93.389	Canis_familiaris
ENSORLG00020001746	sf3b1	100	93.389	ENSCAFG00020004750	SF3B1	100	93.389	Canis_lupus_dingo
ENSORLG00020001746	sf3b1	100	93.389	ENSCHIG00000015226	SF3B1	100	93.389	Capra_hircus
ENSORLG00020001746	sf3b1	100	93.313	ENSTSYG00000009214	SF3B1	100	93.313	Carlito_syrichta
ENSORLG00020001746	sf3b1	99	93.216	ENSCAPG00000006547	SF3B1	99	93.216	Cavia_aperea
ENSORLG00020001746	sf3b1	99	93.338	ENSCPOG00000009353	SF3B1	100	93.338	Cavia_porcellus
ENSORLG00020001746	sf3b1	100	93.389	ENSCCAG00000020506	SF3B1	100	93.389	Cebus_capucinus
ENSORLG00020001746	sf3b1	100	93.389	ENSCATG00000035735	SF3B1	100	93.389	Cercocebus_atys
ENSORLG00020001746	sf3b1	99	93.344	ENSCLAG00000014767	SF3B1	99	93.344	Chinchilla_lanigera
ENSORLG00020001746	sf3b1	100	93.389	ENSCSAG00000011505	SF3B1	100	93.389	Chlorocebus_sabaeus
ENSORLG00020001746	sf3b1	76	92.360	ENSCHOG00000009860	SF3B1	76	92.360	Choloepus_hoffmanni
ENSORLG00020001746	sf3b1	100	93.455	ENSCPBG00000021902	SF3B1	99	94.781	Chrysemys_picta_bellii
ENSORLG00020001746	sf3b1	68	78.384	ENSCING00000002558	-	99	78.738	Ciona_intestinalis
ENSORLG00020001746	sf3b1	99	80.060	ENSCSAVG00000002559	-	99	80.060	Ciona_savignyi
ENSORLG00020001746	sf3b1	100	93.389	ENSCANG00000029415	SF3B1	100	93.389	Colobus_angolensis_palliatus
ENSORLG00020001746	sf3b1	100	93.389	ENSCGRG00001016990	Sf3b1	100	93.389	Cricetulus_griseus_chok1gshd
ENSORLG00020001746	sf3b1	100	93.389	ENSCGRG00000005301	Sf3b1	100	93.389	Cricetulus_griseus_crigri
ENSORLG00020001746	sf3b1	100	93.379	ENSCSEG00000003860	sf3b1	100	93.379	Cynoglossus_semilaevis
ENSORLG00020001746	sf3b1	96	98.179	ENSCVAG00000003680	sf3b1	99	98.179	Cyprinodon_variegatus
ENSORLG00020001746	sf3b1	100	95.361	ENSDARG00000056138	sf3b1	100	95.361	Danio_rerio
ENSORLG00020001746	sf3b1	100	93.318	ENSDNOG00000011754	SF3B1	100	93.318	Dasypus_novemcinctus
ENSORLG00020001746	sf3b1	99	91.501	ENSDORG00000002399	Sf3b1	100	91.424	Dipodomys_ordii
ENSORLG00020001746	sf3b1	100	76.026	FBgn0031266	Sf3b1	100	76.026	Drosophila_melanogaster
ENSORLG00020001746	sf3b1	83	92.202	ENSETEG00000009188	SF3B1	100	92.202	Echinops_telfairi
ENSORLG00020001746	sf3b1	99	86.041	ENSEBUG00000004325	sf3b1	100	88.362	Eptatretus_burgeri
ENSORLG00020001746	sf3b1	100	93.389	ENSEASG00005020159	SF3B1	98	93.389	Equus_asinus_asinus
ENSORLG00020001746	sf3b1	100	93.389	ENSECAG00000021657	SF3B1	98	93.389	Equus_caballus
ENSORLG00020001746	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSORLG00020001746	sf3b1	100	95.242	ENSELUG00000005977	sf3b1	98	95.242	Esox_lucius
ENSORLG00020001746	sf3b1	100	93.389	ENSFCAG00000005038	SF3B1	100	93.389	Felis_catus
ENSORLG00020001746	sf3b1	99	93.487	ENSFALG00000004281	SF3B1	99	93.487	Ficedula_albicollis
ENSORLG00020001746	sf3b1	100	93.389	ENSFDAG00000017510	SF3B1	100	93.389	Fukomys_damarensis
ENSORLG00020001746	sf3b1	100	97.795	ENSFHEG00000014333	sf3b1	100	97.795	Fundulus_heteroclitus
ENSORLG00020001746	sf3b1	100	94.837	ENSGMOG00000006773	sf3b1	100	95.140	Gadus_morhua
ENSORLG00020001746	sf3b1	100	93.455	ENSGALG00000008038	SF3B1	100	93.455	Gallus_gallus
ENSORLG00020001746	sf3b1	98	97.992	ENSGAFG00000000704	sf3b1	100	97.992	Gambusia_affinis
ENSORLG00020001746	sf3b1	100	96.125	ENSGACG00000008839	sf3b1	100	96.125	Gasterosteus_aculeatus
ENSORLG00020001746	sf3b1	100	92.819	ENSGAGG00000017478	SF3B1	100	92.819	Gopherus_agassizii
ENSORLG00020001746	sf3b1	99	88.208	ENSGGOG00000009264	SF3B1	99	88.208	Gorilla_gorilla
ENSORLG00020001746	sf3b1	99	97.104	ENSHBUG00000007705	sf3b1	99	97.104	Haplochromis_burtoni
ENSORLG00020001746	sf3b1	99	93.344	ENSHGLG00000008285	-	99	93.344	Heterocephalus_glaber_female
ENSORLG00020001746	sf3b1	99	91.354	ENSHGLG00100005535	-	99	91.354	Heterocephalus_glaber_male
ENSORLG00020001746	sf3b1	100	96.520	ENSHCOG00000016775	sf3b1	100	96.520	Hippocampus_comes
ENSORLG00020001746	sf3b1	100	95.817	ENSIPUG00000013171	sf3b1	100	95.817	Ictalurus_punctatus
ENSORLG00020001746	sf3b1	100	93.389	ENSSTOG00000011034	SF3B1	100	93.389	Ictidomys_tridecemlineatus
ENSORLG00020001746	sf3b1	99	93.318	ENSJJAG00000010903	Sf3b1	99	93.318	Jaculus_jaculus
ENSORLG00020001746	sf3b1	100	96.889	ENSKMAG00000004009	sf3b1	100	96.889	Kryptolebias_marmoratus
ENSORLG00020001746	sf3b1	100	96.423	ENSLBEG00000022208	sf3b1	100	96.423	Labrus_bergylta
ENSORLG00020001746	sf3b1	99	90.038	ENSLACG00000014832	SF3B1	99	90.038	Latimeria_chalumnae
ENSORLG00020001746	sf3b1	100	94.474	ENSLOCG00000003899	sf3b1	100	94.474	Lepisosteus_oculatus
ENSORLG00020001746	sf3b1	100	93.389	ENSLAFG00000001956	SF3B1	100	93.389	Loxodonta_africana
ENSORLG00020001746	sf3b1	99	93.344	ENSMMUG00000022430	SF3B1	99	93.344	Macaca_mulatta
ENSORLG00020001746	sf3b1	100	93.389	ENSMNEG00000042333	SF3B1	100	94.777	Macaca_nemestrina
ENSORLG00020001746	sf3b1	94	88.647	ENSMLEG00000026141	SF3B1	98	89.104	Mandrillus_leucophaeus
ENSORLG00020001746	sf3b1	100	97.717	ENSMAMG00000010241	sf3b1	100	97.717	Mastacembelus_armatus
ENSORLG00020001746	sf3b1	100	97.032	ENSMZEG00005021254	sf3b1	100	97.032	Maylandia_zebra
ENSORLG00020001746	sf3b1	99	92.874	ENSMGAG00000007017	SF3B1	99	92.874	Meleagris_gallopavo
ENSORLG00020001746	sf3b1	99	89.135	ENSMAUG00000009071	Sf3b1	99	89.135	Mesocricetus_auratus
ENSORLG00020001746	sf3b1	100	93.389	ENSMICG00000013879	SF3B1	100	93.389	Microcebus_murinus
ENSORLG00020001746	sf3b1	99	89.067	ENSMOCG00000000455	Sf3b1	99	89.067	Microtus_ochrogaster
ENSORLG00020001746	sf3b1	84	96.906	ENSMMOG00000000475	sf3b1	100	96.906	Mola_mola
ENSORLG00020001746	sf3b1	100	92.781	ENSMODG00000012275	SF3B1	100	92.781	Monodelphis_domestica
ENSORLG00020001746	sf3b1	100	97.717	ENSMALG00000017211	sf3b1	100	97.717	Monopterus_albus
ENSORLG00020001746	sf3b1	100	93.389	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.389	Mus_caroli
ENSORLG00020001746	sf3b1	100	93.389	ENSMUSG00000025982	Sf3b1	100	93.389	Mus_musculus
ENSORLG00020001746	sf3b1	100	93.389	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.389	Mus_spretus
ENSORLG00020001746	sf3b1	100	93.389	ENSMPUG00000007799	SF3B1	100	93.389	Mustela_putorius_furo
ENSORLG00020001746	sf3b1	100	92.249	ENSMLUG00000000840	SF3B1	100	92.249	Myotis_lucifugus
ENSORLG00020001746	sf3b1	99	93.064	ENSNGAG00000021884	-	100	93.064	Nannospalax_galili
ENSORLG00020001746	sf3b1	100	92.331	ENSNBRG00000015816	sf3b1	100	92.395	Neolamprologus_brichardi
ENSORLG00020001746	sf3b1	100	93.389	ENSNLEG00000006861	SF3B1	100	93.389	Nomascus_leucogenys
ENSORLG00020001746	sf3b1	64	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSORLG00020001746	sf3b1	100	80.892	ENSOPRG00000008596	SF3B1	100	81.041	Ochotona_princeps
ENSORLG00020001746	sf3b1	100	93.389	ENSODEG00000011153	-	100	93.389	Octodon_degus
ENSORLG00020001746	sf3b1	100	97.032	ENSONIG00000013758	sf3b1	100	97.032	Oreochromis_niloticus
ENSORLG00020001746	sf3b1	86	95.417	ENSOCUG00000012722	-	96	95.417	Oryctolagus_cuniculus
ENSORLG00020001746	sf3b1	100	100.000	ENSORLG00000020219	sf3b1	100	100.000	Oryzias_latipes
ENSORLG00020001746	sf3b1	64	99.170	ENSORLG00015001759	sf3b1	98	99.170	Oryzias_latipes_hsok
ENSORLG00020001746	sf3b1	100	99.240	ENSOMEG00000019231	sf3b1	100	99.240	Oryzias_melastigma
ENSORLG00020001746	sf3b1	100	93.389	ENSOARG00000015374	SF3B1	100	93.389	Ovis_aries
ENSORLG00020001746	sf3b1	100	93.389	ENSPPAG00000035007	SF3B1	100	93.389	Pan_paniscus
ENSORLG00020001746	sf3b1	100	93.389	ENSPPRG00000009090	SF3B1	100	93.389	Panthera_pardus
ENSORLG00020001746	sf3b1	100	93.389	ENSPTIG00000021557	SF3B1	100	93.389	Panthera_tigris_altaica
ENSORLG00020001746	sf3b1	99	86.107	ENSPTRG00000012771	SF3B1	99	86.107	Pan_troglodytes
ENSORLG00020001746	sf3b1	100	93.389	ENSPANG00000013417	SF3B1	100	93.389	Papio_anubis
ENSORLG00020001746	sf3b1	100	95.444	ENSPKIG00000000784	sf3b1	100	95.444	Paramormyrops_kingsleyae
ENSORLG00020001746	sf3b1	99	92.331	ENSPSIG00000017222	SF3B1	98	92.331	Pelodiscus_sinensis
ENSORLG00020001746	sf3b1	91	96.725	ENSPMGG00000004330	sf3b1	99	96.725	Periophthalmus_magnuspinnatus
ENSORLG00020001746	sf3b1	99	93.344	ENSPEMG00000010699	Sf3b1	100	93.344	Peromyscus_maniculatus_bairdii
ENSORLG00020001746	sf3b1	100	88.738	ENSPMAG00000001311	sf3b1	100	89.040	Petromyzon_marinus
ENSORLG00020001746	sf3b1	100	92.857	ENSPCIG00000010642	SF3B1	100	92.857	Phascolarctos_cinereus
ENSORLG00020001746	sf3b1	100	98.100	ENSPFOG00000000073	sf3b1	100	98.100	Poecilia_formosa
ENSORLG00020001746	sf3b1	100	98.099	ENSPLAG00000002293	sf3b1	100	98.099	Poecilia_latipinna
ENSORLG00020001746	sf3b1	100	98.175	ENSPMEG00000000446	sf3b1	98	98.175	Poecilia_mexicana
ENSORLG00020001746	sf3b1	100	98.175	ENSPREG00000019652	sf3b1	100	98.175	Poecilia_reticulata
ENSORLG00020001746	sf3b1	100	96.768	ENSPPYG00000013044	SF3B1	100	96.768	Pongo_abelii
ENSORLG00020001746	sf3b1	100	93.237	ENSPCAG00000009292	SF3B1	100	93.237	Procavia_capensis
ENSORLG00020001746	sf3b1	100	93.389	ENSPCOG00000024074	SF3B1	100	93.389	Propithecus_coquereli
ENSORLG00020001746	sf3b1	100	93.389	ENSPVAG00000008302	SF3B1	100	93.389	Pteropus_vampyrus
ENSORLG00020001746	sf3b1	100	96.956	ENSPNYG00000014939	sf3b1	100	96.956	Pundamilia_nyererei
ENSORLG00020001746	sf3b1	100	95.973	ENSPNAG00000008288	sf3b1	100	95.973	Pygocentrus_nattereri
ENSORLG00020001746	sf3b1	100	93.389	ENSRNOG00000013516	Sf3b1	100	93.389	Rattus_norvegicus
ENSORLG00020001746	sf3b1	99	89.650	ENSRBIG00000026096	SF3B1	100	89.650	Rhinopithecus_bieti
ENSORLG00020001746	sf3b1	100	93.389	ENSRROG00000031308	SF3B1	100	93.389	Rhinopithecus_roxellana
ENSORLG00020001746	sf3b1	100	93.389	ENSSBOG00000020080	SF3B1	100	93.389	Saimiri_boliviensis_boliviensis
ENSORLG00020001746	sf3b1	100	92.781	ENSSHAG00000017564	SF3B1	100	92.781	Sarcophilus_harrisii
ENSORLG00020001746	sf3b1	100	95.817	ENSSFOG00015021535	sf3b1	100	95.817	Scleropages_formosus
ENSORLG00020001746	sf3b1	99	96.737	ENSSMAG00000013977	sf3b1	99	96.737	Scophthalmus_maximus
ENSORLG00020001746	sf3b1	100	97.641	ENSSDUG00000017422	sf3b1	100	97.641	Seriola_dumerili
ENSORLG00020001746	sf3b1	100	97.565	ENSSLDG00000019495	sf3b1	100	97.565	Seriola_lalandi_dorsalis
ENSORLG00020001746	sf3b1	75	98.592	ENSSARG00000007016	SF3B1	75	98.592	Sorex_araneus
ENSORLG00020001746	sf3b1	100	93.303	ENSSPUG00000000410	SF3B1	100	93.303	Sphenodon_punctatus
ENSORLG00020001746	sf3b1	100	98.021	ENSSPAG00000010451	sf3b1	99	98.021	Stegastes_partitus
ENSORLG00020001746	sf3b1	91	93.006	ENSSSCG00000016075	SF3B1	100	94.777	Sus_scrofa
ENSORLG00020001746	sf3b1	100	93.455	ENSTGUG00000010553	SF3B1	100	93.455	Taeniopygia_guttata
ENSORLG00020001746	sf3b1	100	96.880	ENSTRUG00000015534	sf3b1	100	96.880	Takifugu_rubripes
ENSORLG00020001746	sf3b1	88	97.004	ENSTBEG00000008714	SF3B1	93	97.004	Tupaia_belangeri
ENSORLG00020001746	sf3b1	92	93.173	ENSTTRG00000003414	SF3B1	92	93.173	Tursiops_truncatus
ENSORLG00020001746	sf3b1	94	83.415	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSORLG00020001746	sf3b1	100	93.389	ENSUMAG00000020945	SF3B1	100	93.389	Ursus_maritimus
ENSORLG00020001746	sf3b1	95	93.268	ENSVPAG00000005798	SF3B1	96	93.268	Vicugna_pacos
ENSORLG00020001746	sf3b1	100	93.389	ENSVVUG00000025948	SF3B1	95	93.389	Vulpes_vulpes
ENSORLG00020001746	sf3b1	100	91.869	ENSXETG00000013339	sf3b1	100	91.869	Xenopus_tropicalis
ENSORLG00020001746	sf3b1	100	93.612	ENSXCOG00000018086	sf3b1	100	93.916	Xiphophorus_couchianus
ENSORLG00020001746	sf3b1	100	98.175	ENSXMAG00000007369	sf3b1	100	98.175	Xiphophorus_maculatus