EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020001904 (Gene tree)
Gene ID: -
Gene Symbol: rtca
Alias: -
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 5950 bases
Position: chr4:23716786-23722735
Accession: 101167358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020001178	RTC	PF01137.21	8.3e-88	1	1
ENSORLP00020021896	RTC	PF01137.21	9.1e-87	1	1
ENSORLP00020021896	RTC_insert	PF05189.13	3.5e-23	1	1
ENSORLP00020001178	RTC_insert	PF05189.13	4.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020013430	-	2998	-	ENSORLP00020021896	353 (aa)	-	-
ENSORLT00020013450	-	1396	XM_004068145	ENSORLP00020001178	364 (aa)	XP_004068193	-

Gene Model

Click here to download ENSORLG00020001904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020001904's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020001904	rtca	100	70.492	ENSG00000137996	RTCA	100	70.492	Homo_sapiens
ENSORLG00020001904	rtca	100	90.110	ENSAPOG00000001345	rtca	99	90.110	Acanthochromis_polyacanthus
ENSORLG00020001904	rtca	73	72.491	ENSAMEG00000008855	RTCA	100	72.491	Ailuropoda_melanoleuca
ENSORLG00020001904	rtca	100	89.011	ENSACIG00000019643	rtca	100	89.011	Amphilophus_citrinellus
ENSORLG00020001904	rtca	100	89.835	ENSAOCG00000014979	rtca	99	89.835	Amphiprion_ocellaris
ENSORLG00020001904	rtca	100	89.835	ENSAPEG00000006945	rtca	99	89.835	Amphiprion_percula
ENSORLG00020001904	rtca	96	91.117	ENSATEG00000006315	rtca	96	91.117	Anabas_testudineus
ENSORLG00020001904	rtca	96	67.139	ENSAPLG00000015430	RTCA	100	67.139	Anas_platyrhynchos
ENSORLG00020001904	rtca	100	70.765	ENSANAG00000025446	RTCA	100	70.765	Aotus_nancymaae
ENSORLG00020001904	rtca	100	89.560	ENSACLG00000020770	rtca	99	89.560	Astatotilapia_calliptera
ENSORLG00020001904	rtca	100	79.945	ENSAMXG00000043271	rtca	100	79.945	Astyanax_mexicanus
ENSORLG00020001904	rtca	100	71.311	ENSBTAG00000006321	RTCA	100	71.311	Bos_taurus
ENSORLG00020001904	rtca	100	70.492	ENSCJAG00000003398	RTCA	100	70.492	Callithrix_jacchus
ENSORLG00020001904	rtca	100	70.219	ENSCAFG00000020010	RTCA	68	70.219	Canis_familiaris
ENSORLG00020001904	rtca	100	70.219	ENSCAFG00020011528	RTCA	57	70.219	Canis_lupus_dingo
ENSORLG00020001904	rtca	100	71.038	ENSCHIG00000018937	RTCA	100	71.038	Capra_hircus
ENSORLG00020001904	rtca	100	70.492	ENSTSYG00000011305	RTCA	100	70.492	Carlito_syrichta
ENSORLG00020001904	rtca	100	70.219	ENSCCAG00000021844	RTCA	100	70.219	Cebus_capucinus
ENSORLG00020001904	rtca	100	68.338	ENSCATG00000019364	RTCA	100	70.550	Cercocebus_atys
ENSORLG00020001904	rtca	87	72.152	ENSCLAG00000006125	RTCA	100	72.152	Chinchilla_lanigera
ENSORLG00020001904	rtca	100	70.492	ENSCSAG00000001509	RTCA	100	70.492	Chlorocebus_sabaeus
ENSORLG00020001904	rtca	100	69.672	ENSCHOG00000005211	RTCA	100	69.672	Choloepus_hoffmanni
ENSORLG00020001904	rtca	100	67.671	ENSCPBG00000026658	RTCA	100	67.671	Chrysemys_picta_bellii
ENSORLG00020001904	rtca	98	57.103	ENSCING00000007875	-	98	57.103	Ciona_intestinalis
ENSORLG00020001904	rtca	98	56.267	ENSCSAVG00000007269	-	98	56.267	Ciona_savignyi
ENSORLG00020001904	rtca	100	70.219	ENSCANG00000040106	RTCA	100	70.219	Colobus_angolensis_palliatus
ENSORLG00020001904	rtca	73	71.747	ENSCGRG00001013163	Rtca	85	71.747	Cricetulus_griseus_chok1gshd
ENSORLG00020001904	rtca	98	84.916	ENSCSEG00000000530	rtca	96	84.916	Cynoglossus_semilaevis
ENSORLG00020001904	rtca	100	73.370	ENSCVAG00000021809	rtca	100	73.370	Cyprinodon_variegatus
ENSORLG00020001904	rtca	100	79.945	ENSDARG00000002215	rtca	100	79.945	Danio_rerio
ENSORLG00020001904	rtca	100	71.038	ENSDNOG00000000456	RTCA	100	71.038	Dasypus_novemcinctus
ENSORLG00020001904	rtca	100	70.765	ENSDORG00000005448	Rtca	100	70.765	Dipodomys_ordii
ENSORLG00020001904	rtca	98	40.056	FBgn0025630	Rtca	98	40.056	Drosophila_melanogaster
ENSORLG00020001904	rtca	95	53.982	ENSEBUG00000008556	rtca	95	54.070	Eptatretus_burgeri
ENSORLG00020001904	rtca	86	30.032	ENSEBUG00000016621	-	83	30.032	Eptatretus_burgeri
ENSORLG00020001904	rtca	100	70.765	ENSEASG00005015926	RTCA	100	70.765	Equus_asinus_asinus
ENSORLG00020001904	rtca	100	70.765	ENSECAG00000019831	RTCA	100	70.765	Equus_caballus
ENSORLG00020001904	rtca	94	63.584	ENSEEUG00000001165	RTCA	100	63.584	Erinaceus_europaeus
ENSORLG00020001904	rtca	99	77.901	ENSELUG00000003741	rtca	99	77.901	Esox_lucius
ENSORLG00020001904	rtca	100	70.765	ENSFCAG00000024460	RTCA	100	70.765	Felis_catus
ENSORLG00020001904	rtca	95	68.546	ENSFALG00000002443	RTCA	91	68.546	Ficedula_albicollis
ENSORLG00020001904	rtca	98	57.182	ENSFDAG00000016084	-	100	57.182	Fukomys_damarensis
ENSORLG00020001904	rtca	100	69.945	ENSFDAG00000012070	-	100	69.945	Fukomys_damarensis
ENSORLG00020001904	rtca	57	92.000	ENSFHEG00000002868	rtca	97	82.222	Fundulus_heteroclitus
ENSORLG00020001904	rtca	100	81.319	ENSGMOG00000013264	rtca	100	81.319	Gadus_morhua
ENSORLG00020001904	rtca	100	67.671	ENSGALG00000005277	RTCA	100	67.671	Gallus_gallus
ENSORLG00020001904	rtca	100	90.385	ENSGAFG00000011853	rtca	99	90.385	Gambusia_affinis
ENSORLG00020001904	rtca	100	87.088	ENSGACG00000013497	rtca	100	87.088	Gasterosteus_aculeatus
ENSORLG00020001904	rtca	83	67.918	ENSGAGG00000023306	RTCA	100	67.918	Gopherus_agassizii
ENSORLG00020001904	rtca	100	69.399	ENSGGOG00000044018	-	100	69.399	Gorilla_gorilla
ENSORLG00020001904	rtca	100	69.945	ENSGGOG00000009546	-	100	69.945	Gorilla_gorilla
ENSORLG00020001904	rtca	100	89.560	ENSHBUG00000002114	rtca	99	89.560	Haplochromis_burtoni
ENSORLG00020001904	rtca	100	69.945	ENSHGLG00000002617	RTCA	100	69.945	Heterocephalus_glaber_female
ENSORLG00020001904	rtca	100	69.945	ENSHGLG00100006056	RTCA	100	69.945	Heterocephalus_glaber_male
ENSORLG00020001904	rtca	100	77.473	ENSHCOG00000020628	rtca	89	77.473	Hippocampus_comes
ENSORLG00020001904	rtca	100	79.121	ENSIPUG00000024803	rtca	100	79.121	Ictalurus_punctatus
ENSORLG00020001904	rtca	100	62.842	ENSSTOG00000033099	-	100	62.842	Ictidomys_tridecemlineatus
ENSORLG00020001904	rtca	100	66.393	ENSSTOG00000013528	-	100	66.393	Ictidomys_tridecemlineatus
ENSORLG00020001904	rtca	100	52.055	ENSJJAG00000016178	Rtca	100	52.055	Jaculus_jaculus
ENSORLG00020001904	rtca	100	91.209	ENSKMAG00000006651	rtca	99	91.209	Kryptolebias_marmoratus
ENSORLG00020001904	rtca	88	87.774	ENSLBEG00000002448	-	99	87.774	Labrus_bergylta
ENSORLG00020001904	rtca	99	88.643	ENSLBEG00000028971	rtca	99	88.643	Labrus_bergylta
ENSORLG00020001904	rtca	100	66.849	ENSLACG00000013666	RTCA	100	66.849	Latimeria_chalumnae
ENSORLG00020001904	rtca	100	76.986	ENSLOCG00000000093	rtca	99	76.986	Lepisosteus_oculatus
ENSORLG00020001904	rtca	100	69.672	ENSLAFG00000001473	RTCA	100	69.672	Loxodonta_africana
ENSORLG00020001904	rtca	100	70.492	ENSMFAG00000034132	RTCA	100	70.492	Macaca_fascicularis
ENSORLG00020001904	rtca	100	70.492	ENSMMUG00000019105	RTCA	100	70.492	Macaca_mulatta
ENSORLG00020001904	rtca	84	70.227	ENSMNEG00000037163	RTCA	100	70.227	Macaca_nemestrina
ENSORLG00020001904	rtca	100	58.470	ENSMLEG00000042151	RTCA	100	58.470	Mandrillus_leucophaeus
ENSORLG00020001904	rtca	100	90.110	ENSMAMG00000016536	rtca	100	90.110	Mastacembelus_armatus
ENSORLG00020001904	rtca	100	89.560	ENSMZEG00005017945	rtca	99	89.560	Maylandia_zebra
ENSORLG00020001904	rtca	87	67.925	ENSMGAG00000006892	RTCA	99	67.925	Meleagris_gallopavo
ENSORLG00020001904	rtca	100	71.038	ENSMAUG00000008488	Rtca	100	71.038	Mesocricetus_auratus
ENSORLG00020001904	rtca	84	71.197	ENSMICG00000008643	RTCA	100	71.197	Microcebus_murinus
ENSORLG00020001904	rtca	100	70.492	ENSMOCG00000016660	Rtca	100	70.492	Microtus_ochrogaster
ENSORLG00020001904	rtca	84	88.925	ENSMMOG00000007750	rtca	100	88.925	Mola_mola
ENSORLG00020001904	rtca	100	71.038	ENSMODG00000003557	RTCA	100	71.038	Monodelphis_domestica
ENSORLG00020001904	rtca	100	89.560	ENSMALG00000020844	rtca	100	89.560	Monopterus_albus
ENSORLG00020001904	rtca	100	69.399	MGP_CAROLIEiJ_G0025565	Rtca	100	69.399	Mus_caroli
ENSORLG00020001904	rtca	100	69.126	ENSMUSG00000000339	Rtca	100	69.126	Mus_musculus
ENSORLG00020001904	rtca	100	69.399	MGP_PahariEiJ_G0027011	Rtca	100	69.399	Mus_pahari
ENSORLG00020001904	rtca	100	69.399	MGP_SPRETEiJ_G0026515	Rtca	100	69.399	Mus_spretus
ENSORLG00020001904	rtca	100	70.765	ENSMPUG00000012119	RTCA	100	70.765	Mustela_putorius_furo
ENSORLG00020001904	rtca	100	67.575	ENSMLUG00000009922	RTCA	100	67.575	Myotis_lucifugus
ENSORLG00020001904	rtca	100	69.945	ENSNGAG00000011540	Rtca	99	69.945	Nannospalax_galili
ENSORLG00020001904	rtca	100	89.560	ENSNBRG00000003062	rtca	99	89.560	Neolamprologus_brichardi
ENSORLG00020001904	rtca	100	70.219	ENSNLEG00000031426	RTCA	100	70.219	Nomascus_leucogenys
ENSORLG00020001904	rtca	50	70.732	ENSMEUG00000010030	-	52	72.727	Notamacropus_eugenii
ENSORLG00020001904	rtca	73	68.401	ENSOPRG00000012092	RTCA	71	68.401	Ochotona_princeps
ENSORLG00020001904	rtca	95	71.839	ENSODEG00000006990	RTCA	96	72.080	Octodon_degus
ENSORLG00020001904	rtca	100	89.560	ENSONIG00000007753	rtca	99	89.560	Oreochromis_niloticus
ENSORLG00020001904	rtca	87	70.662	ENSOANG00000012055	RTCA	98	70.662	Ornithorhynchus_anatinus
ENSORLG00020001904	rtca	100	70.492	ENSOCUG00000014247	RTCA	100	70.492	Oryctolagus_cuniculus
ENSORLG00020001904	rtca	100	99.725	ENSORLG00000013605	rtca	100	99.725	Oryzias_latipes
ENSORLG00020001904	rtca	100	99.725	ENSORLG00015021064	rtca	100	99.725	Oryzias_latipes_hsok
ENSORLG00020001904	rtca	100	96.154	ENSOMEG00000000756	rtca	100	96.154	Oryzias_melastigma
ENSORLG00020001904	rtca	100	65.027	ENSOGAG00000005627	RTCA	100	65.027	Otolemur_garnettii
ENSORLG00020001904	rtca	87	71.384	ENSOARG00000018122	RTCA	100	71.384	Ovis_aries
ENSORLG00020001904	rtca	100	67.546	ENSPPAG00000035119	RTCA	100	69.579	Pan_paniscus
ENSORLG00020001904	rtca	100	71.038	ENSPPRG00000000350	RTCA	100	71.038	Panthera_pardus
ENSORLG00020001904	rtca	100	70.492	ENSPTIG00000012816	RTCA	100	70.492	Panthera_tigris_altaica
ENSORLG00020001904	rtca	100	67.546	ENSPTRG00000001004	RTCA	100	69.579	Pan_troglodytes
ENSORLG00020001904	rtca	100	70.492	ENSPANG00000000346	RTCA	100	70.492	Papio_anubis
ENSORLG00020001904	rtca	100	82.967	ENSPKIG00000001653	rtca	100	82.967	Paramormyrops_kingsleyae
ENSORLG00020001904	rtca	100	67.945	ENSPSIG00000011408	RTCA	100	67.945	Pelodiscus_sinensis
ENSORLG00020001904	rtca	100	70.492	ENSPEMG00000018582	Rtca	100	70.492	Peromyscus_maniculatus_bairdii
ENSORLG00020001904	rtca	99	56.233	ENSPMAG00000009110	rtca	98	56.233	Petromyzon_marinus
ENSORLG00020001904	rtca	100	71.311	ENSPCIG00000007684	RTCA	100	71.311	Phascolarctos_cinereus
ENSORLG00020001904	rtca	100	90.411	ENSPFOG00000004824	rtca	100	90.411	Poecilia_formosa
ENSORLG00020001904	rtca	100	90.385	ENSPLAG00000011753	rtca	99	90.385	Poecilia_latipinna
ENSORLG00020001904	rtca	100	90.385	ENSPMEG00000020469	rtca	99	90.385	Poecilia_mexicana
ENSORLG00020001904	rtca	100	90.110	ENSPREG00000001365	rtca	99	90.110	Poecilia_reticulata
ENSORLG00020001904	rtca	100	70.492	ENSPPYG00000001115	RTCA	100	70.492	Pongo_abelii
ENSORLG00020001904	rtca	100	67.486	ENSPCAG00000005076	RTCA	100	67.486	Procavia_capensis
ENSORLG00020001904	rtca	100	71.038	ENSPCOG00000005603	RTCA	100	71.038	Propithecus_coquereli
ENSORLG00020001904	rtca	100	66.755	ENSPVAG00000009478	RTCA	100	66.755	Pteropus_vampyrus
ENSORLG00020001904	rtca	100	89.560	ENSPNYG00000004722	rtca	99	89.560	Pundamilia_nyererei
ENSORLG00020001904	rtca	100	79.670	ENSPNAG00000022270	rtca	100	79.670	Pygocentrus_nattereri
ENSORLG00020001904	rtca	100	69.126	ENSRNOG00000014575	Rtca	100	69.126	Rattus_norvegicus
ENSORLG00020001904	rtca	100	67.546	ENSRBIG00000041180	RTCA	100	69.579	Rhinopithecus_bieti
ENSORLG00020001904	rtca	100	69.945	ENSRROG00000024929	RTCA	100	69.945	Rhinopithecus_roxellana
ENSORLG00020001904	rtca	100	69.672	ENSSBOG00000028626	RTCA	100	69.672	Saimiri_boliviensis_boliviensis
ENSORLG00020001904	rtca	100	71.311	ENSSHAG00000001758	RTCA	100	71.311	Sarcophilus_harrisii
ENSORLG00020001904	rtca	99	86.944	ENSSMAG00000014680	rtca	97	86.944	Scophthalmus_maximus
ENSORLG00020001904	rtca	98	91.061	ENSSDUG00000015585	rtca	98	90.331	Seriola_dumerili
ENSORLG00020001904	rtca	96	91.691	ENSSLDG00000018985	rtca	95	91.691	Seriola_lalandi_dorsalis
ENSORLG00020001904	rtca	87	66.562	ENSSARG00000013993	RTCA	100	66.562	Sorex_araneus
ENSORLG00020001904	rtca	100	89.835	ENSSPAG00000011938	rtca	99	89.835	Stegastes_partitus
ENSORLG00020001904	rtca	100	71.038	ENSSSCG00000006865	RTCA	100	71.038	Sus_scrofa
ENSORLG00020001904	rtca	100	68.219	ENSTGUG00000005154	RTCA	100	68.219	Taeniopygia_guttata
ENSORLG00020001904	rtca	100	89.286	ENSTRUG00000008799	rtca	100	89.286	Takifugu_rubripes
ENSORLG00020001904	rtca	100	86.538	ENSTNIG00000004725	rtca	100	86.538	Tetraodon_nigroviridis
ENSORLG00020001904	rtca	58	56.190	ENSTBEG00000000943	RTCA	62	82.353	Tupaia_belangeri
ENSORLG00020001904	rtca	100	68.602	ENSTTRG00000015327	RTCA	100	68.602	Tursiops_truncatus
ENSORLG00020001904	rtca	94	71.856	ENSUAMG00000017265	RTCA	96	69.971	Ursus_americanus
ENSORLG00020001904	rtca	100	70.219	ENSUMAG00000007881	RTCA	100	70.219	Ursus_maritimus
ENSORLG00020001904	rtca	87	63.091	ENSVPAG00000001039	RTCA	84	63.091	Vicugna_pacos
ENSORLG00020001904	rtca	100	70.219	ENSVVUG00000022041	RTCA	68	70.219	Vulpes_vulpes
ENSORLG00020001904	rtca	98	58.402	ENSXETG00000031661	RTCA	98	58.402	Xenopus_tropicalis
ENSORLG00020001904	rtca	100	78.022	ENSXCOG00000008002	rtca	100	78.022	Xiphophorus_couchianus
ENSORLG00020001904	rtca	100	89.835	ENSXMAG00000005482	rtca	99	89.835	Xiphophorus_maculatus