EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020002123 (Gene tree)
Gene ID: -
Gene Symbol: rbm28
Alias: -
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 7961 bases
Position: chr6:17654151-17662111
Accession: ZDB-GENE-040426-960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020001418	RRM_1	PF00076.22	2e-57	1	3
ENSORLP00020001418	RRM_1	PF00076.22	2e-57	2	3
ENSORLP00020001418	RRM_1	PF00076.22	2e-57	3	3
ENSORLP00020001427	RRM_1	PF00076.22	4.4e-38	1	2
ENSORLP00020001427	RRM_1	PF00076.22	4.4e-38	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020013058	-	4276	-	ENSORLP00020001418	747 (aa)	-	-
ENSORLT00020013042	-	4564	-	ENSORLP00020001427	722 (aa)	-	-

Gene Model

Click here to download ENSORLG00020002123's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020002123's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020002123	rbm28	69	67.500	ENSG00000106344	RBM28	100	49.515	Homo_sapiens
ENSORLG00020002123	rbm28	60	74.545	ENSAPOG00000015512	rbm28	59	74.501	Acanthochromis_polyacanthus
ENSORLG00020002123	rbm28	97	59.770	ENSAMEG00000004776	RBM28	65	59.740	Ailuropoda_melanoleuca
ENSORLG00020002123	rbm28	58	72.922	ENSACIG00000023153	rbm28	91	72.922	Amphilophus_citrinellus
ENSORLG00020002123	rbm28	60	74.545	ENSAOCG00000000462	rbm28	58	75.442	Amphiprion_ocellaris
ENSORLG00020002123	rbm28	60	74.318	ENSAPEG00000012996	rbm28	59	74.779	Amphiprion_percula
ENSORLG00020002123	rbm28	88	66.457	ENSATEG00000001672	rbm28	84	66.457	Anabas_testudineus
ENSORLG00020002123	rbm28	99	50.916	ENSANAG00000033922	RBM28	77	72.222	Aotus_nancymaae
ENSORLG00020002123	rbm28	99	66.016	ENSACLG00000025024	rbm28	59	74.393	Astatotilapia_calliptera
ENSORLG00020002123	rbm28	61	61.731	ENSAMXG00000000763	rbm28	99	61.959	Astyanax_mexicanus
ENSORLG00020002123	rbm28	64	67.500	ENSBTAG00000017001	RBM28	79	67.500	Bos_taurus
ENSORLG00020002123	rbm28	71	67.500	ENSCJAG00000017731	RBM28	76	72.222	Callithrix_jacchus
ENSORLG00020002123	rbm28	99	51.969	ENSCAFG00000001667	RBM28	58	56.250	Canis_familiaris
ENSORLG00020002123	rbm28	99	51.969	ENSCAFG00020021648	RBM28	58	56.250	Canis_lupus_dingo
ENSORLG00020002123	rbm28	65	53.390	ENSCHIG00000014146	RBM28	59	55.804	Capra_hircus
ENSORLG00020002123	rbm28	67	65.000	ENSTSYG00000002892	RBM28	79	65.000	Carlito_syrichta
ENSORLG00020002123	rbm28	99	51.943	ENSCPOG00000006253	RBM28	58	56.306	Cavia_porcellus
ENSORLG00020002123	rbm28	68	67.500	ENSCCAG00000035105	RBM28	77	72.222	Cebus_capucinus
ENSORLG00020002123	rbm28	70	67.500	ENSCATG00000040497	RBM28	77	67.500	Cercocebus_atys
ENSORLG00020002123	rbm28	66	54.375	ENSCLAG00000003707	RBM28	61	56.306	Chinchilla_lanigera
ENSORLG00020002123	rbm28	99	48.909	ENSCSAG00000010161	RBM28	58	55.079	Chlorocebus_sabaeus
ENSORLG00020002123	rbm28	57	54.032	ENSCHOG00000001994	-	63	54.032	Choloepus_hoffmanni
ENSORLG00020002123	rbm28	54	49.103	ENSCPBG00000018088	RBM28	78	51.079	Chrysemys_picta_bellii
ENSORLG00020002123	rbm28	69	38.829	ENSCING00000009238	-	60	39.775	Ciona_intestinalis
ENSORLG00020002123	rbm28	57	67.500	ENSCANG00000038397	RBM28	70	67.500	Colobus_angolensis_palliatus
ENSORLG00020002123	rbm28	66	54.227	ENSCGRG00001021278	Rbm28	56	56.081	Cricetulus_griseus_chok1gshd
ENSORLG00020002123	rbm28	99	52.276	ENSCGRG00000005098	Rbm28	58	56.081	Cricetulus_griseus_crigri
ENSORLG00020002123	rbm28	99	62.533	ENSCSEG00000004212	rbm28	83	69.163	Cynoglossus_semilaevis
ENSORLG00020002123	rbm28	100	61.394	ENSCVAG00000010493	rbm28	100	65.629	Cyprinodon_variegatus
ENSORLG00020002123	rbm28	99	55.108	ENSDARG00000025332	rbm28	76	58.824	Danio_rerio
ENSORLG00020002123	rbm28	68	51.292	ENSDNOG00000001124	RBM28	58	53.982	Dasypus_novemcinctus
ENSORLG00020002123	rbm28	68	51.600	ENSDORG00000004184	Rbm28	86	55.157	Dipodomys_ordii
ENSORLG00020002123	rbm28	66	53.144	ENSEASG00005008528	RBM28	57	55.408	Equus_asinus_asinus
ENSORLG00020002123	rbm28	66	52.727	ENSECAG00000007745	RBM28	57	54.945	Equus_caballus
ENSORLG00020002123	rbm28	99	49.223	ENSEEUG00000002389	RBM28	58	51.236	Erinaceus_europaeus
ENSORLG00020002123	rbm28	99	58.718	ENSELUG00000020602	rbm28	59	64.502	Esox_lucius
ENSORLG00020002123	rbm28	99	51.031	ENSFCAG00000000946	RBM28	80	67.500	Felis_catus
ENSORLG00020002123	rbm28	99	51.102	ENSFDAG00000010169	RBM28	59	56.081	Fukomys_damarensis
ENSORLG00020002123	rbm28	99	57.760	ENSGMOG00000007091	rbm28	60	61.905	Gadus_morhua
ENSORLG00020002123	rbm28	61	70.759	ENSGAFG00000004802	rbm28	98	71.145	Gambusia_affinis
ENSORLG00020002123	rbm28	86	68.481	ENSGACG00000012612	rbm28	75	68.874	Gasterosteus_aculeatus
ENSORLG00020002123	rbm28	83	56.633	ENSGAGG00000008873	RBM28	87	60.104	Gopherus_agassizii
ENSORLG00020002123	rbm28	66	52.183	ENSGGOG00000004644	RBM28	59	55.079	Gorilla_gorilla
ENSORLG00020002123	rbm28	94	66.345	ENSHBUG00000009611	rbm28	56	75.490	Haplochromis_burtoni
ENSORLG00020002123	rbm28	99	51.047	ENSHGLG00000005409	RBM28	59	56.561	Heterocephalus_glaber_female
ENSORLG00020002123	rbm28	99	51.047	ENSHGLG00100016458	RBM28	59	56.561	Heterocephalus_glaber_male
ENSORLG00020002123	rbm28	59	50.939	ENSIPUG00000007103	rbm28	81	51.294	Ictalurus_punctatus
ENSORLG00020002123	rbm28	99	50.839	ENSSTOG00000002169	RBM28	57	55.157	Ictidomys_tridecemlineatus
ENSORLG00020002123	rbm28	58	55.607	ENSJJAG00000022400	Rbm28	59	55.607	Jaculus_jaculus
ENSORLG00020002123	rbm28	100	67.018	ENSKMAG00000013348	rbm28	100	66.623	Kryptolebias_marmoratus
ENSORLG00020002123	rbm28	61	68.919	ENSLBEG00000012998	rbm28	57	68.764	Labrus_bergylta
ENSORLG00020002123	rbm28	99	61.856	ENSLOCG00000015541	rbm28	76	60.825	Lepisosteus_oculatus
ENSORLG00020002123	rbm28	99	50.916	ENSLAFG00000010717	RBM28	58	54.788	Loxodonta_africana
ENSORLG00020002123	rbm28	70	67.500	ENSMFAG00000031036	RBM28	77	67.500	Macaca_fascicularis
ENSORLG00020002123	rbm28	70	67.500	ENSMMUG00000007250	RBM28	77	67.500	Macaca_mulatta
ENSORLG00020002123	rbm28	99	50.850	ENSMNEG00000036970	RBM28	76	67.500	Macaca_nemestrina
ENSORLG00020002123	rbm28	99	65.059	ENSMAMG00000008525	rbm28	99	64.036	Mastacembelus_armatus
ENSORLG00020002123	rbm28	99	62.450	ENSMZEG00005019625	rbm28	64	74.393	Maylandia_zebra
ENSORLG00020002123	rbm28	68	53.119	ENSMAUG00000002263	Rbm28	56	55.955	Mesocricetus_auratus
ENSORLG00020002123	rbm28	66	52.342	ENSMICG00000000107	RBM28	61	55.056	Microcebus_murinus
ENSORLG00020002123	rbm28	99	50.907	ENSMOCG00000014615	Rbm28	59	55.856	Microtus_ochrogaster
ENSORLG00020002123	rbm28	61	65.675	ENSMMOG00000008600	rbm28	90	65.675	Mola_mola
ENSORLG00020002123	rbm28	88	49.852	ENSMODG00000015151	RBM28	58	55.705	Monodelphis_domestica
ENSORLG00020002123	rbm28	61	70.222	ENSMALG00000006419	rbm28	99	64.554	Monopterus_albus
ENSORLG00020002123	rbm28	99	51.444	MGP_CAROLIEiJ_G0028162	Rbm28	58	55.079	Mus_caroli
ENSORLG00020002123	rbm28	99	51.515	ENSMUSG00000029701	Rbm28	58	55.079	Mus_musculus
ENSORLG00020002123	rbm28	99	52.100	MGP_PahariEiJ_G0021920	Rbm28	58	54.831	Mus_pahari
ENSORLG00020002123	rbm28	99	51.120	MGP_SPRETEiJ_G0029162	Rbm28	58	54.628	Mus_spretus
ENSORLG00020002123	rbm28	99	53.194	ENSMPUG00000006511	RBM28	58	55.973	Mustela_putorius_furo
ENSORLG00020002123	rbm28	66	53.689	ENSMLUG00000002186	RBM28	58	55.111	Myotis_lucifugus
ENSORLG00020002123	rbm28	99	51.067	ENSNGAG00000006480	-	59	55.079	Nannospalax_galili
ENSORLG00020002123	rbm28	99	49.734	ENSNGAG00000017946	-	57	53.636	Nannospalax_galili
ENSORLG00020002123	rbm28	71	67.500	ENSNLEG00000012307	RBM28	77	67.500	Nomascus_leucogenys
ENSORLG00020002123	rbm28	82	59.281	ENSMEUG00000009611	RBM28	83	60.366	Notamacropus_eugenii
ENSORLG00020002123	rbm28	66	51.346	ENSODEG00000003213	-	57	52.809	Octodon_degus
ENSORLG00020002123	rbm28	73	58.152	ENSODEG00000013217	-	82	57.326	Octodon_degus
ENSORLG00020002123	rbm28	99	62.800	ENSONIG00000014924	rbm28	59	74.610	Oreochromis_niloticus
ENSORLG00020002123	rbm28	99	47.074	ENSOANG00000000815	-	59	48.786	Ornithorhynchus_anatinus
ENSORLG00020002123	rbm28	66	53.414	ENSOCUG00000003009	RBM28	58	55.142	Oryctolagus_cuniculus
ENSORLG00020002123	rbm28	100	97.351	ENSORLG00000009636	rbm28	100	97.351	Oryzias_latipes
ENSORLG00020002123	rbm28	87	95.146	ENSORLG00015015030	rbm28	98	95.146	Oryzias_latipes_hsok
ENSORLG00020002123	rbm28	61	88.053	ENSOMEG00000007801	rbm28	60	88.106	Oryzias_melastigma
ENSORLG00020002123	rbm28	70	65.000	ENSOGAG00000006011	RBM28	76	65.000	Otolemur_garnettii
ENSORLG00020002123	rbm28	99	51.928	ENSOARG00000002547	RBM28	59	55.804	Ovis_aries
ENSORLG00020002123	rbm28	69	67.500	ENSPPAG00000041730	RBM28	77	67.500	Pan_paniscus
ENSORLG00020002123	rbm28	99	50.386	ENSPPRG00000004420	RBM28	80	67.500	Panthera_pardus
ENSORLG00020002123	rbm28	99	50.771	ENSPTIG00000008550	RBM28	80	67.500	Panthera_tigris_altaica
ENSORLG00020002123	rbm28	69	67.500	ENSPTRG00000019659	RBM28	77	67.500	Pan_troglodytes
ENSORLG00020002123	rbm28	70	67.500	ENSPANG00000022295	RBM28	77	67.500	Papio_anubis
ENSORLG00020002123	rbm28	100	55.458	ENSPKIG00000023453	rbm28	84	55.894	Paramormyrops_kingsleyae
ENSORLG00020002123	rbm28	85	68.545	ENSPMGG00000012840	rbm28	93	68.161	Periophthalmus_magnuspinnatus
ENSORLG00020002123	rbm28	99	49.468	ENSPEMG00000020673	Rbm28	60	56.081	Peromyscus_maniculatus_bairdii
ENSORLG00020002123	rbm28	50	41.710	ENSPMAG00000002948	-	99	42.228	Petromyzon_marinus
ENSORLG00020002123	rbm28	99	49.806	ENSPCIG00000012810	RBM28	59	54.464	Phascolarctos_cinereus
ENSORLG00020002123	rbm28	61	70.485	ENSPFOG00000018209	rbm28	59	70.485	Poecilia_formosa
ENSORLG00020002123	rbm28	61	71.111	ENSPLAG00000016078	rbm28	56	71.111	Poecilia_latipinna
ENSORLG00020002123	rbm28	61	70.769	ENSPMEG00000004292	rbm28	59	70.769	Poecilia_mexicana
ENSORLG00020002123	rbm28	85	70.264	ENSPREG00000014287	rbm28	78	70.264	Poecilia_reticulata
ENSORLG00020002123	rbm28	99	50.130	ENSPPYG00000017975	RBM28	58	54.853	Pongo_abelii
ENSORLG00020002123	rbm28	74	51.389	ENSPCAG00000008223	RBM28	83	50.943	Procavia_capensis
ENSORLG00020002123	rbm28	70	67.500	ENSPCOG00000016797	RBM28	77	67.500	Propithecus_coquereli
ENSORLG00020002123	rbm28	76	62.085	ENSPVAG00000005443	RBM28	73	62.687	Pteropus_vampyrus
ENSORLG00020002123	rbm28	99	66.797	ENSPNYG00000014003	rbm28	59	74.614	Pundamilia_nyererei
ENSORLG00020002123	rbm28	99	51.248	ENSRNOG00000005468	Rbm28	58	55.281	Rattus_norvegicus
ENSORLG00020002123	rbm28	70	67.500	ENSRBIG00000033990	RBM28	77	67.500	Rhinopithecus_bieti
ENSORLG00020002123	rbm28	70	67.500	ENSRROG00000040747	RBM28	77	67.500	Rhinopithecus_roxellana
ENSORLG00020002123	rbm28	85	44.170	ENSSBOG00000012308	RBM28	73	56.604	Saimiri_boliviensis_boliviensis
ENSORLG00020002123	rbm28	99	47.739	ENSSHAG00000017017	RBM28	60	54.773	Sarcophilus_harrisii
ENSORLG00020002123	rbm28	99	54.714	ENSSFOG00015001231	rbm28	59	61.136	Scleropages_formosus
ENSORLG00020002123	rbm28	62	67.333	ENSSMAG00000003885	rbm28	91	67.333	Scophthalmus_maximus
ENSORLG00020002123	rbm28	62	75.497	ENSSDUG00000014270	rbm28	88	75.497	Seriola_dumerili
ENSORLG00020002123	rbm28	59	75.221	ENSSLDG00000020099	rbm28	59	75.276	Seriola_lalandi_dorsalis
ENSORLG00020002123	rbm28	73	59.946	ENSSARG00000008303	RBM28	80	59.296	Sorex_araneus
ENSORLG00020002123	rbm28	70	61.765	ENSSPUG00000000838	RBM28	80	61.765	Sphenodon_punctatus
ENSORLG00020002123	rbm28	60	72.460	ENSSPAG00000023305	rbm28	62	73.128	Stegastes_partitus
ENSORLG00020002123	rbm28	99	51.376	ENSSSCG00000031847	RBM28	59	55.654	Sus_scrofa
ENSORLG00020002123	rbm28	99	61.390	ENSTRUG00000013311	rbm28	58	67.177	Takifugu_rubripes
ENSORLG00020002123	rbm28	99	57.895	ENSTNIG00000017962	rbm28	82	65.208	Tetraodon_nigroviridis
ENSORLG00020002123	rbm28	79	56.090	ENSTBEG00000012749	RBM28	69	56.037	Tupaia_belangeri
ENSORLG00020002123	rbm28	91	58.257	ENSTTRG00000013647	RBM28	89	56.410	Tursiops_truncatus
ENSORLG00020002123	rbm28	99	50.260	ENSUAMG00000006949	RBM28	89	54.661	Ursus_americanus
ENSORLG00020002123	rbm28	99	52.288	ENSUMAG00000005997	RBM28	58	56.222	Ursus_maritimus
ENSORLG00020002123	rbm28	88	47.516	ENSVPAG00000008304	RBM28	70	70.968	Vicugna_pacos
ENSORLG00020002123	rbm28	99	49.729	ENSVVUG00000007270	RBM28	58	56.250	Vulpes_vulpes
ENSORLG00020002123	rbm28	66	50.202	ENSXETG00000009271	rbm28	59	51.522	Xenopus_tropicalis
ENSORLG00020002123	rbm28	61	68.493	ENSXCOG00000020357	rbm28	91	68.493	Xiphophorus_couchianus
ENSORLG00020002123	rbm28	60	71.236	ENSXMAG00000004415	rbm28	58	71.236	Xiphophorus_maculatus