EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020002951 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: -
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 29759 bases
Position: chr17:4670152-4699910
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020002213	ResIII	PF04851.15	3.7e-12	1	1
ENSORLP00020002213	DEAD	PF00270.29	1.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020011698	-	3526	-	ENSORLP00020002213	1174 (aa)	-	-

Gene Model

Click here to download ENSORLG00020002951's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020002951's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020002951	hfm1	54	35.714	ENSORLG00020022595	ascc3	63	35.714
ENSORLG00020002951	hfm1	63	34.025	ENSORLG00020004648	snrnp200	61	34.025

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020002951	hfm1	96	49.355	ENSG00000162669	HFM1	85	49.274	Homo_sapiens
ENSORLG00020002951	hfm1	70	70.192	ENSAPOG00000005304	hfm1	100	70.192	Acanthochromis_polyacanthus
ENSORLG00020002951	hfm1	84	53.056	ENSAMEG00000000432	HFM1	74	53.056	Ailuropoda_melanoleuca
ENSORLG00020002951	hfm1	74	69.165	ENSACIG00000021553	hfm1	83	69.165	Amphilophus_citrinellus
ENSORLG00020002951	hfm1	70	71.325	ENSAOCG00000022839	hfm1	89	84.946	Amphiprion_ocellaris
ENSORLG00020002951	hfm1	70	71.205	ENSAPEG00000014316	hfm1	100	71.205	Amphiprion_percula
ENSORLG00020002951	hfm1	77	69.650	ENSATEG00000019181	hfm1	79	69.103	Anabas_testudineus
ENSORLG00020002951	hfm1	79	54.536	ENSAPLG00000013639	HFM1	68	54.819	Anas_platyrhynchos
ENSORLG00020002951	hfm1	97	48.154	ENSANAG00000029513	HFM1	67	55.988	Aotus_nancymaae
ENSORLG00020002951	hfm1	74	68.817	ENSACLG00000009033	hfm1	98	69.664	Astatotilapia_calliptera
ENSORLG00020002951	hfm1	97	53.859	ENSAMXG00000006108	hfm1	82	53.758	Astyanax_mexicanus
ENSORLG00020002951	hfm1	78	55.723	ENSBTAG00000020856	HFM1	68	55.622	Bos_taurus
ENSORLG00020002951	hfm1	77	56.707	ENSCJAG00000001843	HFM1	67	56.707	Callithrix_jacchus
ENSORLG00020002951	hfm1	99	48.134	ENSCAFG00000020187	HFM1	66	56.334	Canis_familiaris
ENSORLG00020002951	hfm1	97	48.248	ENSTSYG00000014250	HFM1	85	48.441	Carlito_syrichta
ENSORLG00020002951	hfm1	78	55.939	ENSCPOG00000007421	HFM1	69	56.122	Cavia_porcellus
ENSORLG00020002951	hfm1	97	49.556	ENSCCAG00000033206	HFM1	84	49.674	Cebus_capucinus
ENSORLG00020002951	hfm1	96	49.275	ENSCATG00000030987	HFM1	85	49.239	Cercocebus_atys
ENSORLG00020002951	hfm1	97	48.284	ENSCLAG00000005173	HFM1	65	56.282	Chinchilla_lanigera
ENSORLG00020002951	hfm1	53	51.965	ENSCSAVG00000005094	-	100	51.965	Ciona_savignyi
ENSORLG00020002951	hfm1	73	53.355	ENSCGRG00001016995	Hfm1	66	53.355	Cricetulus_griseus_chok1gshd
ENSORLG00020002951	hfm1	76	55.901	ENSCGRG00000017181	Hfm1	67	55.901	Cricetulus_griseus_crigri
ENSORLG00020002951	hfm1	76	66.084	ENSCSEG00000017659	hfm1	90	65.846	Cynoglossus_semilaevis
ENSORLG00020002951	hfm1	55	71.449	ENSCVAG00000005075	hfm1	86	71.449	Cyprinodon_variegatus
ENSORLG00020002951	hfm1	86	52.446	ENSDARG00000104288	hfm1	96	52.316	Danio_rerio
ENSORLG00020002951	hfm1	96	48.312	ENSDNOG00000004776	HFM1	82	48.312	Dasypus_novemcinctus
ENSORLG00020002951	hfm1	96	47.547	ENSDORG00000014661	Hfm1	85	47.774	Dipodomys_ordii
ENSORLG00020002951	hfm1	75	54.795	ENSEASG00005015424	HFM1	89	55.342	Equus_asinus_asinus
ENSORLG00020002951	hfm1	96	48.822	ENSECAG00000024039	HFM1	71	53.471	Equus_caballus
ENSORLG00020002951	hfm1	70	65.947	ENSELUG00000018944	hfm1	99	65.947	Esox_lucius
ENSORLG00020002951	hfm1	77	55.758	ENSFCAG00000029116	HFM1	68	55.589	Felis_catus
ENSORLG00020002951	hfm1	78	55.713	ENSFALG00000001781	HFM1	68	56.033	Ficedula_albicollis
ENSORLG00020002951	hfm1	77	55.228	ENSFDAG00000020816	HFM1	65	55.228	Fukomys_damarensis
ENSORLG00020002951	hfm1	76	60.021	ENSGMOG00000017436	hfm1	99	60.230	Gadus_morhua
ENSORLG00020002951	hfm1	75	68.072	ENSGAFG00000018093	hfm1	100	71.084	Gambusia_affinis
ENSORLG00020002951	hfm1	75	89.286	ENSGACG00000015686	hfm1	92	89.286	Gasterosteus_aculeatus
ENSORLG00020002951	hfm1	76	57.084	ENSGGOG00000038524	HFM1	67	57.084	Gorilla_gorilla
ENSORLG00020002951	hfm1	74	91.327	ENSHBUG00000007309	hfm1	80	91.327	Haplochromis_burtoni
ENSORLG00020002951	hfm1	63	68.512	ENSHCOG00000019632	hfm1	97	68.512	Hippocampus_comes
ENSORLG00020002951	hfm1	74	59.615	ENSIPUG00000017020	hfm1	98	62.367	Ictalurus_punctatus
ENSORLG00020002951	hfm1	78	63.485	ENSJJAG00000017198	Hfm1	67	63.485	Jaculus_jaculus
ENSORLG00020002951	hfm1	70	68.427	ENSKMAG00000002282	hfm1	91	68.427	Kryptolebias_marmoratus
ENSORLG00020002951	hfm1	75	64.944	ENSLBEG00000006759	hfm1	97	69.112	Labrus_bergylta
ENSORLG00020002951	hfm1	75	56.718	ENSLACG00000010698	HFM1	91	56.615	Latimeria_chalumnae
ENSORLG00020002951	hfm1	82	58.562	ENSLOCG00000004931	hfm1	94	58.523	Lepisosteus_oculatus
ENSORLG00020002951	hfm1	52	59.178	ENSLAFG00000015903	-	91	59.178	Loxodonta_africana
ENSORLG00020002951	hfm1	96	47.410	ENSMFAG00000003649	HFM1	85	47.331	Macaca_fascicularis
ENSORLG00020002951	hfm1	96	49.356	ENSMMUG00000006819	HFM1	85	49.275	Macaca_mulatta
ENSORLG00020002951	hfm1	61	75.064	ENSMAMG00000004623	hfm1	87	89.231	Mastacembelus_armatus
ENSORLG00020002951	hfm1	74	68.817	ENSMZEG00005004679	hfm1	98	69.664	Maylandia_zebra
ENSORLG00020002951	hfm1	60	66.917	ENSMGAG00000008437	HFM1	89	66.917	Meleagris_gallopavo
ENSORLG00020002951	hfm1	77	55.172	ENSMAUG00000018858	Hfm1	67	55.172	Mesocricetus_auratus
ENSORLG00020002951	hfm1	77	56.244	ENSMICG00000037935	HFM1	67	56.429	Microcebus_murinus
ENSORLG00020002951	hfm1	77	55.282	ENSMOCG00000014812	Hfm1	68	55.282	Microtus_ochrogaster
ENSORLG00020002951	hfm1	70	70.700	ENSMMOG00000006148	hfm1	99	70.700	Mola_mola
ENSORLG00020002951	hfm1	72	69.490	ENSMALG00000002401	hfm1	100	69.490	Monopterus_albus
ENSORLG00020002951	hfm1	96	48.130	ENSMUSG00000043410	Hfm1	97	38.995	Mus_musculus
ENSORLG00020002951	hfm1	96	47.755	MGP_PahariEiJ_G0017268	Hfm1	68	55.081	Mus_pahari
ENSORLG00020002951	hfm1	96	48.455	MGP_SPRETEiJ_G0028495	Hfm1	68	55.544	Mus_spretus
ENSORLG00020002951	hfm1	96	48.755	ENSMPUG00000004594	HFM1	82	48.359	Mustela_putorius_furo
ENSORLG00020002951	hfm1	96	47.854	ENSMLUG00000010200	HFM1	84	47.770	Myotis_lucifugus
ENSORLG00020002951	hfm1	74	65.628	ENSNBRG00000002910	hfm1	97	70.717	Neolamprologus_brichardi
ENSORLG00020002951	hfm1	76	55.971	ENSNLEG00000010285	HFM1	67	55.971	Nomascus_leucogenys
ENSORLG00020002951	hfm1	70	50.167	ENSMEUG00000015788	HFM1	61	50.859	Notamacropus_eugenii
ENSORLG00020002951	hfm1	67	53.638	ENSOPRG00000013916	HFM1	61	52.511	Ochotona_princeps
ENSORLG00020002951	hfm1	78	69.706	ENSONIG00000010590	hfm1	93	69.898	Oreochromis_niloticus
ENSORLG00020002951	hfm1	64	84.729	ENSORLG00000026844	hfm1	100	84.729	Oryzias_latipes
ENSORLG00020002951	hfm1	97	81.758	ENSOMEG00000016474	hfm1	83	82.000	Oryzias_melastigma
ENSORLG00020002951	hfm1	78	55.802	ENSOGAG00000032369	HFM1	78	56.224	Otolemur_garnettii
ENSORLG00020002951	hfm1	77	55.802	ENSOARG00000015812	HFM1	68	55.802	Ovis_aries
ENSORLG00020002951	hfm1	96	49.597	ENSPPAG00000024582	HFM1	92	49.516	Pan_paniscus
ENSORLG00020002951	hfm1	77	55.657	ENSPPRG00000003270	HFM1	68	55.488	Panthera_pardus
ENSORLG00020002951	hfm1	77	55.589	ENSPTIG00000018881	HFM1	68	55.589	Panthera_tigris_altaica
ENSORLG00020002951	hfm1	96	49.435	ENSPTRG00000000948	HFM1	85	49.279	Pan_troglodytes
ENSORLG00020002951	hfm1	96	49.234	ENSPANG00000009838	HFM1	85	49.199	Papio_anubis
ENSORLG00020002951	hfm1	70	62.402	ENSPKIG00000003810	hfm1	96	62.530	Paramormyrops_kingsleyae
ENSORLG00020002951	hfm1	65	65.614	ENSPMGG00000011059	hfm1	99	65.614	Periophthalmus_magnuspinnatus
ENSORLG00020002951	hfm1	77	54.848	ENSPEMG00000022852	Hfm1	68	54.914	Peromyscus_maniculatus_bairdii
ENSORLG00020002951	hfm1	77	56.881	ENSPCIG00000014233	HFM1	65	57.143	Phascolarctos_cinereus
ENSORLG00020002951	hfm1	76	69.167	ENSPFOG00000017194	hfm1	91	69.424	Poecilia_formosa
ENSORLG00020002951	hfm1	76	68.158	ENSPLAG00000000571	hfm1	85	69.444	Poecilia_latipinna
ENSORLG00020002951	hfm1	76	68.262	ENSPMEG00000019475	hfm1	85	69.551	Poecilia_mexicana
ENSORLG00020002951	hfm1	74	69.346	ENSPREG00000007803	hfm1	100	70.929	Poecilia_reticulata
ENSORLG00020002951	hfm1	77	56.397	ENSPPYG00000001163	HFM1	67	56.832	Pongo_abelii
ENSORLG00020002951	hfm1	78	63.115	ENSPVAG00000009713	HFM1	65	63.115	Pteropus_vampyrus
ENSORLG00020002951	hfm1	74	68.710	ENSPNYG00000001795	hfm1	98	69.664	Pundamilia_nyererei
ENSORLG00020002951	hfm1	74	62.018	ENSPNAG00000010865	hfm1	93	62.018	Pygocentrus_nattereri
ENSORLG00020002951	hfm1	77	55.624	ENSRNOG00000023299	Hfm1	68	55.624	Rattus_norvegicus
ENSORLG00020002951	hfm1	97	49.042	ENSRROG00000045569	HFM1	85	49.234	Rhinopithecus_roxellana
ENSORLG00020002951	hfm1	96	49.718	ENSSBOG00000027456	HFM1	69	57.259	Saimiri_boliviensis_boliviensis
ENSORLG00020002951	hfm1	65	47.133	ENSSHAG00000014616	-	70	57.810	Sarcophilus_harrisii
ENSORLG00020002951	hfm1	97	53.163	ENSSFOG00015020129	hfm1	82	53.852	Scleropages_formosus
ENSORLG00020002951	hfm1	70	70.503	ENSSMAG00000006907	hfm1	94	66.122	Scophthalmus_maximus
ENSORLG00020002951	hfm1	70	71.567	ENSSDUG00000011424	hfm1	100	71.567	Seriola_dumerili
ENSORLG00020002951	hfm1	71	71.256	ENSSLDG00000016386	hfm1	100	71.256	Seriola_lalandi_dorsalis
ENSORLG00020002951	hfm1	71	70.519	ENSSPAG00000001023	hfm1	100	70.519	Stegastes_partitus
ENSORLG00020002951	hfm1	76	56.846	ENSSSCG00000006912	HFM1	70	56.743	Sus_scrofa
ENSORLG00020002951	hfm1	76	55.855	ENSTGUG00000006172	HFM1	99	56.113	Taeniopygia_guttata
ENSORLG00020002951	hfm1	76	56.893	ENSTTRG00000013933	HFM1	68	56.332	Tursiops_truncatus
ENSORLG00020002951	hfm1	77	53.893	ENSVPAG00000011331	HFM1	67	53.893	Vicugna_pacos
ENSORLG00020002951	hfm1	75	54.883	ENSVVUG00000020760	HFM1	89	55.069	Vulpes_vulpes
ENSORLG00020002951	hfm1	74	70.318	ENSXMAG00000004178	hfm1	100	70.318	Xiphophorus_maculatus