EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSORLG00020003019 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
-
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Oryzias_latipes_hni
Status
putative
Strand
Minus strand
Length
4600 bases
Position
chr20:22008801-22013400
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00020002289LSMPF01423.225.5e-2011
ENSORLP00020002263LSMPF01423.222e-1911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00020011605-306-ENSORLP00020002263101 (aa)--
ENSORLT00020011593-4378-ENSORLP0002000228996 (aa)--
Gene Model
Click here to download ENSORLG00020003019's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020003019's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00020003019lsm58690.805ENSG00000106355LSM510095.161Homo_sapiens
ENSORLG00020003019lsm58198.780ENSAPOG00000011743LSM510098.387Acanthochromis_polyacanthus
ENSORLG00020003019lsm58694.253ENSAPOG00000020779LSM510095.294Acanthochromis_polyacanthus
ENSORLG00020003019lsm58690.805ENSAMEG00000006700LSM59690.805Ailuropoda_melanoleuca
ENSORLG00020003019lsm58153.659ENSACIG00000019185lsm58093.333Amphilophus_citrinellus
ENSORLG00020003019lsm58694.253ENSAOCG00000001636lsm59694.253Amphiprion_ocellaris
ENSORLG00020003019lsm56598.387ENSAPEG00000008201lsm510098.387Amphiprion_percula
ENSORLG00020003019lsm58694.253ENSAPEG00000008151lsm59694.253Amphiprion_percula
ENSORLG00020003019lsm58396.429ENSATEG00000020470lsm57693.333Anabas_testudineus
ENSORLG00020003019lsm57797.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSORLG00020003019lsm55592.857ENSACAG00000009530LSM59392.857Anolis_carolinensis
ENSORLG00020003019lsm58690.805ENSANAG00000034409-9690.805Aotus_nancymaae
ENSORLG00020003019lsm58587.209ENSANAG00000024192-9087.209Aotus_nancymaae
ENSORLG00020003019lsm58470.588ENSANAG00000037758-8186.154Aotus_nancymaae
ENSORLG00020003019lsm59486.667ENSACLG00000012891lsm59492.771Astatotilapia_calliptera
ENSORLG00020003019lsm58677.778ENSAMXG00000035543lsm59677.778Astyanax_mexicanus
ENSORLG00020003019lsm58690.805ENSBTAG00000002332LSM59690.805Bos_taurus
ENSORLG00020003019lsm59267.045WBGene00003079lsm-59668.966Caenorhabditis_elegans
ENSORLG00020003019lsm58380.000ENSCJAG00000005678-9380.723Callithrix_jacchus
ENSORLG00020003019lsm58591.860ENSCJAG00000047379LSM58184.615Callithrix_jacchus
ENSORLG00020003019lsm55086.000ENSCAFG00000030781-5886.000Canis_familiaris
ENSORLG00020003019lsm58689.655ENSCAFG00000019261-9689.655Canis_familiaris
ENSORLG00020003019lsm58690.805ENSCAFG00020004946LSM59690.805Canis_lupus_dingo
ENSORLG00020003019lsm58688.506ENSCHIG00000004079-9688.506Capra_hircus
ENSORLG00020003019lsm57372.973ENSCHIG00000021428-10066.667Capra_hircus
ENSORLG00020003019lsm58690.805ENSCHIG00000024539LSM59690.805Capra_hircus
ENSORLG00020003019lsm58678.161ENSTSYG00000028728-9578.161Carlito_syrichta
ENSORLG00020003019lsm58672.414ENSTSYG00000026530-8772.414Carlito_syrichta
ENSORLG00020003019lsm58767.045ENSTSYG00000036637-9667.045Carlito_syrichta
ENSORLG00020003019lsm58690.805ENSTSYG00000006449-9690.805Carlito_syrichta
ENSORLG00020003019lsm57889.333ENSCAPG00000006980LSM510089.333Cavia_aperea
ENSORLG00020003019lsm58690.805ENSCPOG00000036386LSM59690.805Cavia_porcellus
ENSORLG00020003019lsm58689.655ENSCCAG00000000821-9689.655Cebus_capucinus
ENSORLG00020003019lsm58690.805ENSCCAG00000037808-9690.805Cebus_capucinus
ENSORLG00020003019lsm58688.506ENSCCAG00000032123-9688.506Cebus_capucinus
ENSORLG00020003019lsm57175.000ENSCCAG00000037334-8875.000Cebus_capucinus
ENSORLG00020003019lsm58671.264ENSCCAG00000032792-8189.231Cebus_capucinus
ENSORLG00020003019lsm58580.233ENSCATG00000014790-9590.909Cercocebus_atys
ENSORLG00020003019lsm58690.805ENSCATG00000040218LSM510095.161Cercocebus_atys
ENSORLG00020003019lsm58690.805ENSCLAG00000000202LSM59690.805Chinchilla_lanigera
ENSORLG00020003019lsm58775.000ENSCLAG00000005062-8775.000Chinchilla_lanigera
ENSORLG00020003019lsm57494.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSORLG00020003019lsm58690.805ENSCPBG00000013685LSM59690.805Chrysemys_picta_bellii
ENSORLG00020003019lsm58382.500ENSCING00000020625-9480.952Ciona_intestinalis
ENSORLG00020003019lsm58382.500ENSCSAVG00000001439-9382.927Ciona_savignyi
ENSORLG00020003019lsm58690.805ENSCANG00000039909LSM510095.161Colobus_angolensis_palliatus
ENSORLG00020003019lsm58690.805ENSCGRG00001015461Lsm59690.805Cricetulus_griseus_chok1gshd
ENSORLG00020003019lsm57896.000ENSCGRG00000007677Lsm510096.000Cricetulus_griseus_crigri
ENSORLG00020003019lsm58655.172ENSCSEG00000015286lsm57693.333Cynoglossus_semilaevis
ENSORLG00020003019lsm58693.103ENSCVAG00000004262lsm59693.103Cyprinodon_variegatus
ENSORLG00020003019lsm59187.356ENSDARG00000071573lsm510096.774Danio_rerio
ENSORLG00020003019lsm58295.181ENSDNOG00000034958LSM59395.181Dasypus_novemcinctus
ENSORLG00020003019lsm58581.395ENSDNOG00000049495-9481.395Dasypus_novemcinctus
ENSORLG00020003019lsm58690.805ENSDORG00000009422Lsm59690.805Dipodomys_ordii
ENSORLG00020003019lsm58083.117FBgn0035675CG66109576.744Drosophila_melanogaster
ENSORLG00020003019lsm58570.732ENSETEG00000001469-9468.605Echinops_telfairi
ENSORLG00020003019lsm57864.557ENSETEG00000000777-9163.750Echinops_telfairi
ENSORLG00020003019lsm58373.750ENSETEG00000010651-9470.588Echinops_telfairi
ENSORLG00020003019lsm57777.027ENSETEG00000016074-9877.027Echinops_telfairi
ENSORLG00020003019lsm58690.805ENSETEG00000018068LSM59690.805Echinops_telfairi
ENSORLG00020003019lsm58392.500ENSEBUG00000008540lsm59688.506Eptatretus_burgeri
ENSORLG00020003019lsm58690.805ENSEASG00005003500LSM59690.805Equus_asinus_asinus
ENSORLG00020003019lsm58675.862ENSECAG00000018445LSM59575.862Equus_caballus
ENSORLG00020003019lsm55991.228ENSEEUG00000004102LSM59591.228Erinaceus_europaeus
ENSORLG00020003019lsm58691.954ENSELUG00000007792lsm59691.954Esox_lucius
ENSORLG00020003019lsm58690.805ENSFCAG00000000230LSM59690.805Felis_catus
ENSORLG00020003019lsm58292.405ENSFALG00000001892LSM59592.405Ficedula_albicollis
ENSORLG00020003019lsm58365.000ENSFDAG00000008685-9565.000Fukomys_damarensis
ENSORLG00020003019lsm58690.805ENSFDAG00000008767LSM59690.805Fukomys_damarensis
ENSORLG00020003019lsm58484.337ENSFHEG00000004011lsm59084.337Fundulus_heteroclitus
ENSORLG00020003019lsm58693.103ENSGMOG00000018235lsm59793.103Gadus_morhua
ENSORLG00020003019lsm58690.805ENSGALG00000041625LSM59690.805Gallus_gallus
ENSORLG00020003019lsm56598.387ENSGAFG00000016824lsm510098.387Gambusia_affinis
ENSORLG00020003019lsm58693.103ENSGACG00000005528lsm59693.103Gasterosteus_aculeatus
ENSORLG00020003019lsm58690.805ENSGAGG00000015593LSM59690.805Gopherus_agassizii
ENSORLG00020003019lsm58690.805ENSGGOG00000043469LSM59690.805Gorilla_gorilla
ENSORLG00020003019lsm59486.667ENSHBUG00000013773lsm59492.771Haplochromis_burtoni
ENSORLG00020003019lsm58690.805ENSHGLG00000011765LSM59690.805Heterocephalus_glaber_female
ENSORLG00020003019lsm57896.000ENSHGLG00100015610LSM59687.356Heterocephalus_glaber_male
ENSORLG00020003019lsm58654.023ENSHCOG00000008288lsm57691.111Hippocampus_comes
ENSORLG00020003019lsm58690.805ENSIPUG00000021095LSM59690.805Ictalurus_punctatus
ENSORLG00020003019lsm59370.787ENSSTOG00000033886-10070.787Ictidomys_tridecemlineatus
ENSORLG00020003019lsm58690.805ENSSTOG00000012662LSM59690.805Ictidomys_tridecemlineatus
ENSORLG00020003019lsm58392.500ENSJJAG00000012145-9688.506Jaculus_jaculus
ENSORLG00020003019lsm58666.667ENSJJAG00000016144-7579.032Jaculus_jaculus
ENSORLG00020003019lsm57887.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSORLG00020003019lsm58693.103ENSKMAG00000021861lsm59693.103Kryptolebias_marmoratus
ENSORLG00020003019lsm55583.929ENSLBEG00000017379lsm59283.929Labrus_bergylta
ENSORLG00020003019lsm58197.561ENSLBEG00000009235LSM56597.561Labrus_bergylta
ENSORLG00020003019lsm58395.000ENSLACG00000022448LSM59690.805Latimeria_chalumnae
ENSORLG00020003019lsm58690.805ENSLOCG00000012903lsm59690.805Lepisosteus_oculatus
ENSORLG00020003019lsm59164.368ENSLAFG00000027938-9565.517Loxodonta_africana
ENSORLG00020003019lsm58690.805ENSLAFG00000029579LSM59690.805Loxodonta_africana
ENSORLG00020003019lsm58690.805ENSMFAG00000038508LSM59690.805Macaca_fascicularis
ENSORLG00020003019lsm58688.506ENSMFAG00000030152-9688.506Macaca_fascicularis
ENSORLG00020003019lsm58580.233ENSMMUG00000039822-9580.233Macaca_mulatta
ENSORLG00020003019lsm58688.506ENSMMUG00000030131-9688.506Macaca_mulatta
ENSORLG00020003019lsm55184.615ENSMMUG00000045129-8184.615Macaca_mulatta
ENSORLG00020003019lsm58688.506ENSMNEG00000037935-9688.506Macaca_nemestrina
ENSORLG00020003019lsm58690.805ENSMNEG00000015331LSM510095.161Macaca_nemestrina
ENSORLG00020003019lsm58380.000ENSMLEG00000034037-9578.824Mandrillus_leucophaeus
ENSORLG00020003019lsm58690.805ENSMLEG00000024945LSM59690.805Mandrillus_leucophaeus
ENSORLG00020003019lsm58687.356ENSMAMG00000012869lsm59687.356Mastacembelus_armatus
ENSORLG00020003019lsm59486.667ENSMZEG00005019554lsm59492.771Maylandia_zebra
ENSORLG00020003019lsm58690.805ENSMGAG00000012117LSM59690.805Meleagris_gallopavo
ENSORLG00020003019lsm58393.750ENSMAUG00000008132-9689.655Mesocricetus_auratus
ENSORLG00020003019lsm58690.805ENSMAUG00000012222Lsm59690.805Mesocricetus_auratus
ENSORLG00020003019lsm56194.915ENSMICG00000033928-7794.915Microcebus_murinus
ENSORLG00020003019lsm58690.805ENSMICG00000005353LSM59690.805Microcebus_murinus
ENSORLG00020003019lsm58690.805ENSMOCG00000012018Lsm59690.805Microtus_ochrogaster
ENSORLG00020003019lsm58297.468ENSMMOG00000004026lsm59197.468Mola_mola
ENSORLG00020003019lsm56595.161ENSMODG00000013274-10095.161Monodelphis_domestica
ENSORLG00020003019lsm56595.161ENSMALG00000010343lsm510095.161Monopterus_albus
ENSORLG00020003019lsm58690.805MGP_CAROLIEiJ_G0028421Lsm59597.500Mus_caroli
ENSORLG00020003019lsm58690.805ENSMUSG00000091625Lsm59597.500Mus_musculus
ENSORLG00020003019lsm58690.805MGP_PahariEiJ_G0022171Lsm59597.500Mus_pahari
ENSORLG00020003019lsm58690.805MGP_SPRETEiJ_G0029423Lsm59597.500Mus_spretus
ENSORLG00020003019lsm58690.805ENSMLUG00000017028LSM59690.805Myotis_lucifugus
ENSORLG00020003019lsm59267.742ENSNGAG00000022569-9567.742Nannospalax_galili
ENSORLG00020003019lsm59175.281ENSNGAG00000017707-9578.652Nannospalax_galili
ENSORLG00020003019lsm58690.805ENSNGAG00000024142Lsm59690.805Nannospalax_galili
ENSORLG00020003019lsm55996.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSORLG00020003019lsm55072.917ENSNBRG00000009964LSM59691.111Neolamprologus_brichardi
ENSORLG00020003019lsm58690.805ENSNLEG00000015268LSM59690.805Nomascus_leucogenys
ENSORLG00020003019lsm57896.000ENSOPRG00000002443LSM510096.000Ochotona_princeps
ENSORLG00020003019lsm58690.805ENSODEG00000019072-9690.805Octodon_degus
ENSORLG00020003019lsm58690.805ENSODEG00000008258-9690.805Octodon_degus
ENSORLG00020003019lsm57857.333ENSOANG00000014540-10057.333Ornithorhynchus_anatinus
ENSORLG00020003019lsm58690.805ENSOCUG00000029043LSM59690.805Oryctolagus_cuniculus
ENSORLG00020003019lsm58695.402ENSORLG00000027725lsm55695.402Oryzias_latipes
ENSORLG00020003019lsm58794.318ENSORLG00015003338lsm59794.318Oryzias_latipes_hsok
ENSORLG00020003019lsm59591.209ENSOMEG00000001078lsm59793.182Oryzias_melastigma
ENSORLG00020003019lsm58690.805ENSOGAG00000013892LSM59690.805Otolemur_garnettii
ENSORLG00020003019lsm58690.805ENSOARG00000006944LSM59690.805Ovis_aries
ENSORLG00020003019lsm58690.805ENSPPAG00000003697-9690.805Pan_paniscus
ENSORLG00020003019lsm58690.805ENSPPRG00000002550LSM59690.805Panthera_pardus
ENSORLG00020003019lsm58690.805ENSPTIG00000015604LSM59690.805Panthera_tigris_altaica
ENSORLG00020003019lsm58673.563ENSPTRG00000049488-9775.000Pan_troglodytes
ENSORLG00020003019lsm58690.805ENSPTRG00000019057LSM59690.805Pan_troglodytes
ENSORLG00020003019lsm58580.233ENSPANG00000032538-9580.233Papio_anubis
ENSORLG00020003019lsm58391.250ENSPANG00000033477-9687.356Papio_anubis
ENSORLG00020003019lsm58690.805ENSPANG00000032179-9690.805Papio_anubis
ENSORLG00020003019lsm58693.103ENSPKIG00000011910lsm59693.103Paramormyrops_kingsleyae
ENSORLG00020003019lsm57797.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSORLG00020003019lsm56598.387ENSPMGG00000011699lsm510098.387Periophthalmus_magnuspinnatus
ENSORLG00020003019lsm58268.354ENSPEMG00000022375-8965.854Peromyscus_maniculatus_bairdii
ENSORLG00020003019lsm58693.103ENSPFOG00000001433lsm59693.103Poecilia_formosa
ENSORLG00020003019lsm58693.103ENSPLAG00000009665lsm59693.103Poecilia_latipinna
ENSORLG00020003019lsm58693.103ENSPMEG00000022265lsm59693.103Poecilia_mexicana
ENSORLG00020003019lsm56598.387ENSPREG00000022452lsm510098.387Poecilia_reticulata
ENSORLG00020003019lsm58687.356ENSPPYG00000017661LSM59687.356Pongo_abelii
ENSORLG00020003019lsm58095.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSORLG00020003019lsm58690.805ENSPVAG00000009786LSM59690.805Pteropus_vampyrus
ENSORLG00020003019lsm59486.667ENSPNYG00000022236lsm59492.771Pundamilia_nyererei
ENSORLG00020003019lsm58690.805ENSPNAG00000001887lsm59690.805Pygocentrus_nattereri
ENSORLG00020003019lsm58690.805ENSRNOG00000042126Lsm59690.805Rattus_norvegicus
ENSORLG00020003019lsm58687.500ENSRNOG00000027305AABR07065089.19687.500Rattus_norvegicus
ENSORLG00020003019lsm58690.805ENSRBIG00000030714-9690.805Rhinopithecus_bieti
ENSORLG00020003019lsm58690.805ENSRBIG00000027803-10095.161Rhinopithecus_bieti
ENSORLG00020003019lsm58690.805ENSRBIG00000030340-9690.805Rhinopithecus_bieti
ENSORLG00020003019lsm58689.655ENSRBIG00000024431-9689.655Rhinopithecus_bieti
ENSORLG00020003019lsm58690.805ENSRROG00000023884-9690.805Rhinopithecus_roxellana
ENSORLG00020003019lsm58690.805ENSRROG00000004655-9690.805Rhinopithecus_roxellana
ENSORLG00020003019lsm58690.805ENSRROG00000042782-10095.161Rhinopithecus_roxellana
ENSORLG00020003019lsm57946.914YER146W-8846.341Saccharomyces_cerevisiae
ENSORLG00020003019lsm58690.805ENSSBOG00000012312LSM59690.805Saimiri_boliviensis_boliviensis
ENSORLG00020003019lsm58689.655ENSSBOG00000019124-9689.655Saimiri_boliviensis_boliviensis
ENSORLG00020003019lsm58667.816ENSSBOG00000034794-8184.615Saimiri_boliviensis_boliviensis
ENSORLG00020003019lsm58693.103ENSSFOG00015010099lsm59693.103Scleropages_formosus
ENSORLG00020003019lsm58655.172ENSSMAG00000007895lsm57693.333Scophthalmus_maximus
ENSORLG00020003019lsm56598.387ENSSDUG00000010762lsm510098.387Seriola_dumerili
ENSORLG00020003019lsm58694.253ENSSLDG00000025242lsm59694.253Seriola_lalandi_dorsalis
ENSORLG00020003019lsm58075.325ENSSLDG00000008014-9275.325Seriola_lalandi_dorsalis
ENSORLG00020003019lsm55591.071ENSSARG00000003330LSM56291.071Sorex_araneus
ENSORLG00020003019lsm58688.506ENSSPUG00000002690LSM510093.548Sphenodon_punctatus
ENSORLG00020003019lsm58656.322ENSSPAG00000005435lsm57693.333Stegastes_partitus
ENSORLG00020003019lsm58690.805ENSSSCG00000026064-9690.805Sus_scrofa
ENSORLG00020003019lsm56884.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSORLG00020003019lsm58689.655ENSTGUG00000017539LSM59689.655Taeniopygia_guttata
ENSORLG00020003019lsm57988.235ENSTRUG00000017749lsm56688.235Takifugu_rubripes
ENSORLG00020003019lsm58690.805ENSTNIG00000008695lsm59590.805Tetraodon_nigroviridis
ENSORLG00020003019lsm58690.805ENSTBEG00000004876LSM59690.805Tupaia_belangeri
ENSORLG00020003019lsm58690.805ENSTTRG00000004237LSM59690.805Tursiops_truncatus
ENSORLG00020003019lsm55184.615ENSUAMG00000009786LSM56884.615Ursus_americanus
ENSORLG00020003019lsm59882.828ENSUMAG00000002625LSM56882.828Ursus_maritimus
ENSORLG00020003019lsm58690.805ENSVPAG00000009985LSM59690.805Vicugna_pacos
ENSORLG00020003019lsm58690.805ENSVVUG00000021311LSM59690.805Vulpes_vulpes
ENSORLG00020003019lsm58195.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSORLG00020003019lsm56598.387ENSXCOG00000015348lsm510098.387Xiphophorus_couchianus
ENSORLG00020003019lsm58693.103ENSXMAG00000029988lsm59693.103Xiphophorus_maculatus

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