EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020003236 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 4797 bases
Position: chr9:18026851-18031647
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020002465	PRP21_like_P	PF12230.8	2.9e-52	1	1
ENSORLP00020002465	Surp	PF01805.20	6.3e-46	1	2
ENSORLP00020002465	Surp	PF01805.20	6.3e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020011262	-	2809	-	ENSORLP00020002465	788 (aa)	-	-

Gene Model

Click here to download ENSORLG00020003236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020003236's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020003236	sf3a1	94	84.367	ENSG00000099995	SF3A1	96	82.808	Homo_sapiens
ENSORLG00020003236	sf3a1	97	91.484	ENSAPOG00000020465	sf3a1	99	91.165	Acanthochromis_polyacanthus
ENSORLG00020003236	sf3a1	94	83.962	ENSAMEG00000007737	SF3A1	99	80.051	Ailuropoda_melanoleuca
ENSORLG00020003236	sf3a1	97	91.355	ENSACIG00000020672	sf3a1	99	91.037	Amphilophus_citrinellus
ENSORLG00020003236	sf3a1	97	91.355	ENSAOCG00000003060	sf3a1	99	91.037	Amphiprion_ocellaris
ENSORLG00020003236	sf3a1	97	91.484	ENSAPEG00000010735	sf3a1	99	91.165	Amphiprion_percula
ENSORLG00020003236	sf3a1	98	89.796	ENSATEG00000021201	sf3a1	96	90.000	Anabas_testudineus
ENSORLG00020003236	sf3a1	93	83.671	ENSAPLG00000009057	SF3A1	98	82.092	Anas_platyrhynchos
ENSORLG00020003236	sf3a1	97	79.067	ENSACAG00000009415	SF3A1	99	77.985	Anolis_carolinensis
ENSORLG00020003236	sf3a1	94	83.445	ENSANAG00000032045	SF3A1	99	80.253	Aotus_nancymaae
ENSORLG00020003236	sf3a1	97	90.310	ENSACLG00000012622	sf3a1	99	90.641	Astatotilapia_calliptera
ENSORLG00020003236	sf3a1	94	87.217	ENSAMXG00000005382	sf3a1	96	87.617	Astyanax_mexicanus
ENSORLG00020003236	sf3a1	94	83.712	ENSBTAG00000003390	SF3A1	96	82.677	Bos_taurus
ENSORLG00020003236	sf3a1	78	44.689	WBGene00004188	prp-21	52	52.500	Caenorhabditis_elegans
ENSORLG00020003236	sf3a1	94	83.445	ENSCJAG00000010370	SF3A1	96	82.546	Callithrix_jacchus
ENSORLG00020003236	sf3a1	94	83.445	ENSCAFG00000012559	SF3A1	99	80.253	Canis_familiaris
ENSORLG00020003236	sf3a1	94	83.445	ENSCAFG00020000838	SF3A1	99	80.253	Canis_lupus_dingo
ENSORLG00020003236	sf3a1	95	83.888	ENSCHIG00000018642	SF3A1	96	82.808	Capra_hircus
ENSORLG00020003236	sf3a1	94	83.962	ENSTSYG00000004739	SF3A1	99	80.506	Carlito_syrichta
ENSORLG00020003236	sf3a1	95	68.074	ENSCAPG00000015414	SF3A1	97	68.733	Cavia_aperea
ENSORLG00020003236	sf3a1	94	84.097	ENSCPOG00000014589	SF3A1	96	82.546	Cavia_porcellus
ENSORLG00020003236	sf3a1	94	83.445	ENSCCAG00000032006	SF3A1	99	80.253	Cebus_capucinus
ENSORLG00020003236	sf3a1	94	83.712	ENSCATG00000029241	SF3A1	96	82.808	Cercocebus_atys
ENSORLG00020003236	sf3a1	94	84.097	ENSCLAG00000006508	SF3A1	96	82.399	Chinchilla_lanigera
ENSORLG00020003236	sf3a1	94	83.712	ENSCSAG00000009470	SF3A1	99	80.380	Chlorocebus_sabaeus
ENSORLG00020003236	sf3a1	58	90.476	ENSCHOG00000005201	SF3A1	61	90.476	Choloepus_hoffmanni
ENSORLG00020003236	sf3a1	97	81.677	ENSCPBG00000007595	SF3A1	99	80.407	Chrysemys_picta_bellii
ENSORLG00020003236	sf3a1	94	50.973	ENSCING00000008526	-	95	51.044	Ciona_intestinalis
ENSORLG00020003236	sf3a1	89	55.102	ENSCSAVG00000005608	-	90	66.202	Ciona_savignyi
ENSORLG00020003236	sf3a1	94	83.712	ENSCANG00000033564	SF3A1	99	80.380	Colobus_angolensis_palliatus
ENSORLG00020003236	sf3a1	94	83.445	ENSCGRG00001008933	Sf3a1	99	80.633	Cricetulus_griseus_chok1gshd
ENSORLG00020003236	sf3a1	94	83.445	ENSCGRG00000006127	Sf3a1	99	80.633	Cricetulus_griseus_crigri
ENSORLG00020003236	sf3a1	95	90.053	ENSCSEG00000010792	sf3a1	96	90.318	Cynoglossus_semilaevis
ENSORLG00020003236	sf3a1	95	91.379	ENSCVAG00000004560	sf3a1	99	88.875	Cyprinodon_variegatus
ENSORLG00020003236	sf3a1	95	87.384	ENSDARG00000041887	sf3a1	100	90.857	Danio_rerio
ENSORLG00020003236	sf3a1	94	83.984	ENSDNOG00000010629	SF3A1	99	80.025	Dasypus_novemcinctus
ENSORLG00020003236	sf3a1	94	83.845	ENSDORG00000005613	Sf3a1	99	80.253	Dipodomys_ordii
ENSORLG00020003236	sf3a1	84	83.683	ENSETEG00000017194	SF3A1	95	83.982	Echinops_telfairi
ENSORLG00020003236	sf3a1	92	66.360	ENSEBUG00000001285	sf3a1	91	67.674	Eptatretus_burgeri
ENSORLG00020003236	sf3a1	94	83.712	ENSEASG00005010254	SF3A1	99	80.126	Equus_asinus_asinus
ENSORLG00020003236	sf3a1	94	83.712	ENSECAG00000023962	SF3A1	99	80.126	Equus_caballus
ENSORLG00020003236	sf3a1	73	89.655	ENSEEUG00000003159	SF3A1	82	89.655	Erinaceus_europaeus
ENSORLG00020003236	sf3a1	95	85.997	ENSELUG00000022578	sf3a1	99	86.922	Esox_lucius
ENSORLG00020003236	sf3a1	94	83.311	ENSFCAG00000011932	SF3A1	99	80.000	Felis_catus
ENSORLG00020003236	sf3a1	93	82.703	ENSFALG00000006944	SF3A1	97	83.101	Ficedula_albicollis
ENSORLG00020003236	sf3a1	94	83.827	ENSFDAG00000009560	SF3A1	96	82.677	Fukomys_damarensis
ENSORLG00020003236	sf3a1	97	90.272	ENSFHEG00000010866	sf3a1	99	90.537	Fundulus_heteroclitus
ENSORLG00020003236	sf3a1	97	84.496	ENSGMOG00000016024	sf3a1	99	84.123	Gadus_morhua
ENSORLG00020003236	sf3a1	93	83.649	ENSGALG00000007937	SF3A1	98	81.596	Gallus_gallus
ENSORLG00020003236	sf3a1	97	91.108	ENSGAFG00000009111	sf3a1	99	90.793	Gambusia_affinis
ENSORLG00020003236	sf3a1	97	87.179	ENSGACG00000011893	sf3a1	99	86.387	Gasterosteus_aculeatus
ENSORLG00020003236	sf3a1	95	83.026	ENSGAGG00000000762	SF3A1	99	82.763	Gopherus_agassizii
ENSORLG00020003236	sf3a1	94	84.367	ENSGGOG00000012631	SF3A1	96	82.808	Gorilla_gorilla
ENSORLG00020003236	sf3a1	97	91.344	ENSHBUG00000015795	sf3a1	99	90.641	Haplochromis_burtoni
ENSORLG00020003236	sf3a1	94	83.578	ENSHGLG00000007907	SF3A1	96	82.677	Heterocephalus_glaber_female
ENSORLG00020003236	sf3a1	94	83.578	ENSHGLG00100013799	SF3A1	96	82.677	Heterocephalus_glaber_male
ENSORLG00020003236	sf3a1	97	86.194	ENSHCOG00000015423	sf3a1	99	85.531	Hippocampus_comes
ENSORLG00020003236	sf3a1	93	84.553	ENSIPUG00000002470	sf3a1	94	85.422	Ictalurus_punctatus
ENSORLG00020003236	sf3a1	92	84.836	ENSSTOG00000013892	SF3A1	99	80.253	Ictidomys_tridecemlineatus
ENSORLG00020003236	sf3a1	94	83.962	ENSJJAG00000022566	Sf3a1	99	80.405	Jaculus_jaculus
ENSORLG00020003236	sf3a1	95	90.837	ENSKMAG00000002400	sf3a1	96	91.368	Kryptolebias_marmoratus
ENSORLG00020003236	sf3a1	97	90.439	ENSLBEG00000022974	sf3a1	99	89.615	Labrus_bergylta
ENSORLG00020003236	sf3a1	97	81.525	ENSLACG00000003565	SF3A1	99	81.552	Latimeria_chalumnae
ENSORLG00020003236	sf3a1	95	87.037	ENSLOCG00000008251	sf3a1	95	87.037	Lepisosteus_oculatus
ENSORLG00020003236	sf3a1	92	55.027	ENSLAFG00000026032	-	92	54.939	Loxodonta_africana
ENSORLG00020003236	sf3a1	97	80.674	ENSLAFG00000000448	SF3A1	99	80.253	Loxodonta_africana
ENSORLG00020003236	sf3a1	94	83.578	ENSMFAG00000031979	SF3A1	99	80.253	Macaca_fascicularis
ENSORLG00020003236	sf3a1	94	83.578	ENSMMUG00000005547	SF3A1	99	80.253	Macaca_mulatta
ENSORLG00020003236	sf3a1	94	83.712	ENSMNEG00000037229	SF3A1	99	80.380	Macaca_nemestrina
ENSORLG00020003236	sf3a1	94	83.712	ENSMLEG00000041908	SF3A1	99	80.380	Mandrillus_leucophaeus
ENSORLG00020003236	sf3a1	93	91.870	ENSMAMG00000006460	sf3a1	99	87.065	Mastacembelus_armatus
ENSORLG00020003236	sf3a1	97	90.310	ENSMZEG00005009633	sf3a1	99	90.641	Maylandia_zebra
ENSORLG00020003236	sf3a1	93	83.649	ENSMGAG00000001330	SF3A1	97	82.846	Meleagris_gallopavo
ENSORLG00020003236	sf3a1	91	78.976	ENSMAUG00000020317	Sf3a1	99	74.904	Mesocricetus_auratus
ENSORLG00020003236	sf3a1	94	83.578	ENSMICG00000010038	SF3A1	99	79.620	Microcebus_murinus
ENSORLG00020003236	sf3a1	96	82.199	ENSMOCG00000008438	Sf3a1	99	80.633	Microtus_ochrogaster
ENSORLG00020003236	sf3a1	95	89.628	ENSMMOG00000015588	sf3a1	98	87.051	Mola_mola
ENSORLG00020003236	sf3a1	92	84.268	ENSMODG00000009270	SF3A1	99	80.076	Monodelphis_domestica
ENSORLG00020003236	sf3a1	95	90.993	ENSMALG00000000148	sf3a1	96	91.921	Monopterus_albus
ENSORLG00020003236	sf3a1	97	81.534	MGP_CAROLIEiJ_G0016029	Sf3a1	98	80.513	Mus_caroli
ENSORLG00020003236	sf3a1	97	81.534	ENSMUSG00000002129	Sf3a1	98	80.513	Mus_musculus
ENSORLG00020003236	sf3a1	97	81.534	MGP_PahariEiJ_G0016862	Sf3a1	98	80.641	Mus_pahari
ENSORLG00020003236	sf3a1	97	81.534	MGP_SPRETEiJ_G0016870	Sf3a1	98	80.513	Mus_spretus
ENSORLG00020003236	sf3a1	94	83.178	ENSMPUG00000013144	SF3A1	99	80.380	Mustela_putorius_furo
ENSORLG00020003236	sf3a1	94	83.693	ENSMLUG00000002139	SF3A1	96	82.546	Myotis_lucifugus
ENSORLG00020003236	sf3a1	94	84.246	ENSNGAG00000016977	Sf3a1	99	80.126	Nannospalax_galili
ENSORLG00020003236	sf3a1	97	90.851	ENSNBRG00000016642	sf3a1	99	90.153	Neolamprologus_brichardi
ENSORLG00020003236	sf3a1	94	83.712	ENSNLEG00000003686	SF3A1	99	80.380	Nomascus_leucogenys
ENSORLG00020003236	sf3a1	92	76.955	ENSMEUG00000008741	SF3A1	100	75.297	Notamacropus_eugenii
ENSORLG00020003236	sf3a1	92	85.246	ENSOPRG00000016636	SF3A1	99	81.163	Ochotona_princeps
ENSORLG00020003236	sf3a1	96	82.199	ENSODEG00000002571	SF3A1	99	80.482	Octodon_degus
ENSORLG00020003236	sf3a1	97	91.860	ENSONIG00000010848	sf3a1	99	91.154	Oreochromis_niloticus
ENSORLG00020003236	sf3a1	94	83.693	ENSOCUG00000007633	SF3A1	99	80.253	Oryctolagus_cuniculus
ENSORLG00020003236	sf3a1	96	99.469	ENSORLG00000013050	sf3a1	100	99.469	Oryzias_latipes
ENSORLG00020003236	sf3a1	98	95.876	ENSORLG00015017411	sf3a1	99	95.876	Oryzias_latipes_hsok
ENSORLG00020003236	sf3a1	98	93.967	ENSOMEG00000013362	sf3a1	99	93.967	Oryzias_melastigma
ENSORLG00020003236	sf3a1	94	84.097	ENSOGAG00000012931	SF3A1	99	80.633	Otolemur_garnettii
ENSORLG00020003236	sf3a1	94	82.510	ENSOARG00000006849	SF3A1	96	81.496	Ovis_aries
ENSORLG00020003236	sf3a1	94	83.423	ENSPPAG00000041790	SF3A1	96	81.890	Pan_paniscus
ENSORLG00020003236	sf3a1	94	83.311	ENSPPRG00000004391	SF3A1	99	80.000	Panthera_pardus
ENSORLG00020003236	sf3a1	93	83.671	ENSPTIG00000000844	SF3A1	95	84.563	Panthera_tigris_altaica
ENSORLG00020003236	sf3a1	94	84.367	ENSPTRG00000014240	SF3A1	96	82.808	Pan_troglodytes
ENSORLG00020003236	sf3a1	94	83.712	ENSPANG00000020772	SF3A1	99	80.380	Papio_anubis
ENSORLG00020003236	sf3a1	74	89.655	ENSPSIG00000012803	SF3A1	94	89.655	Pelodiscus_sinensis
ENSORLG00020003236	sf3a1	94	85.695	ENSPMGG00000023096	sf3a1	99	87.088	Periophthalmus_magnuspinnatus
ENSORLG00020003236	sf3a1	94	83.311	ENSPEMG00000009494	Sf3a1	99	80.506	Peromyscus_maniculatus_bairdii
ENSORLG00020003236	sf3a1	68	77.148	ENSPMAG00000007139	-	100	72.605	Petromyzon_marinus
ENSORLG00020003236	sf3a1	92	83.995	ENSPCIG00000022692	SF3A1	96	82.917	Phascolarctos_cinereus
ENSORLG00020003236	sf3a1	97	81.266	ENSPFOG00000016768	sf3a1	99	81.266	Poecilia_formosa
ENSORLG00020003236	sf3a1	97	91.366	ENSPLAG00000017268	sf3a1	99	91.176	Poecilia_latipinna
ENSORLG00020003236	sf3a1	94	91.284	ENSPMEG00000019811	sf3a1	99	90.455	Poecilia_mexicana
ENSORLG00020003236	sf3a1	97	91.366	ENSPREG00000010347	sf3a1	99	91.049	Poecilia_reticulata
ENSORLG00020003236	sf3a1	94	83.712	ENSPPYG00000011707	SF3A1	99	80.380	Pongo_abelii
ENSORLG00020003236	sf3a1	56	84.711	ENSPCAG00000003266	SF3A1	56	84.711	Procavia_capensis
ENSORLG00020003236	sf3a1	94	83.445	ENSPCOG00000026630	SF3A1	96	81.759	Propithecus_coquereli
ENSORLG00020003236	sf3a1	90	84.174	ENSPVAG00000017719	SF3A1	90	84.174	Pteropus_vampyrus
ENSORLG00020003236	sf3a1	97	91.214	ENSPNYG00000018706	sf3a1	99	90.513	Pundamilia_nyererei
ENSORLG00020003236	sf3a1	94	86.818	ENSPNAG00000003721	sf3a1	96	86.818	Pygocentrus_nattereri
ENSORLG00020003236	sf3a1	96	81.806	ENSRNOG00000005218	Sf3a1	99	80.178	Rattus_norvegicus
ENSORLG00020003236	sf3a1	94	83.578	ENSRBIG00000032167	SF3A1	96	82.677	Rhinopithecus_bieti
ENSORLG00020003236	sf3a1	94	83.578	ENSRROG00000044908	SF3A1	97	81.960	Rhinopithecus_roxellana
ENSORLG00020003236	sf3a1	88	84.615	ENSSBOG00000021960	SF3A1	98	81.900	Saimiri_boliviensis_boliviensis
ENSORLG00020003236	sf3a1	95	79.443	ENSSHAG00000003666	SF3A1	92	81.943	Sarcophilus_harrisii
ENSORLG00020003236	sf3a1	97	86.264	ENSSFOG00015004579	sf3a1	99	85.987	Scleropages_formosus
ENSORLG00020003236	sf3a1	95	90.788	ENSSMAG00000004275	sf3a1	99	88.417	Scophthalmus_maximus
ENSORLG00020003236	sf3a1	97	91.344	ENSSDUG00000022219	sf3a1	99	90.641	Seriola_dumerili
ENSORLG00020003236	sf3a1	97	91.344	ENSSLDG00000012642	sf3a1	99	90.641	Seriola_lalandi_dorsalis
ENSORLG00020003236	sf3a1	93	81.107	ENSSARG00000005960	SF3A1	99	78.283	Sorex_araneus
ENSORLG00020003236	sf3a1	93	83.378	ENSSPUG00000018863	SF3A1	99	81.179	Sphenodon_punctatus
ENSORLG00020003236	sf3a1	97	92.119	ENSSPAG00000011856	sf3a1	99	91.410	Stegastes_partitus
ENSORLG00020003236	sf3a1	94	83.311	ENSSSCG00000010002	SF3A1	97	81.960	Sus_scrofa
ENSORLG00020003236	sf3a1	93	83.558	ENSTGUG00000010547	SF3A1	98	82.759	Taeniopygia_guttata
ENSORLG00020003236	sf3a1	95	88.298	ENSTRUG00000006118	sf3a1	99	84.744	Takifugu_rubripes
ENSORLG00020003236	sf3a1	52	88.433	ENSTNIG00000005713	sf3a1	73	87.879	Tetraodon_nigroviridis
ENSORLG00020003236	sf3a1	94	77.089	ENSTBEG00000012771	SF3A1	96	76.115	Tupaia_belangeri
ENSORLG00020003236	sf3a1	94	83.467	ENSTTRG00000001535	SF3A1	99	80.278	Tursiops_truncatus
ENSORLG00020003236	sf3a1	95	82.546	ENSUAMG00000006750	SF3A1	96	82.546	Ursus_americanus
ENSORLG00020003236	sf3a1	94	83.962	ENSUMAG00000016665	SF3A1	98	80.873	Ursus_maritimus
ENSORLG00020003236	sf3a1	94	83.445	ENSVVUG00000003075	SF3A1	99	80.253	Vulpes_vulpes
ENSORLG00020003236	sf3a1	97	77.308	ENSXETG00000016144	sf3a1	96	83.806	Xenopus_tropicalis
ENSORLG00020003236	sf3a1	97	90.335	ENSXCOG00000015653	sf3a1	99	90.026	Xiphophorus_couchianus
ENSORLG00020003236	sf3a1	98	90.488	ENSXMAG00000002753	sf3a1	99	90.746	Xiphophorus_maculatus