EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020003504 (Gene tree)
Gene ID: -
Gene Symbol: vars
Alias: -
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 21006 bases
Position: chr16:19879563-19900568
Accession: 101158795
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020002734	tRNA-synt_1g	PF09334.11	5e-12	1	1
ENSORLP00020002734	Anticodon_1	PF08264.13	1.2e-34	1	1
ENSORLP00020002734	tRNA-synt_1	PF00133.22	8e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020010804	-	3965	XM_004078001	ENSORLP00020002734	1278 (aa)	XP_004078049	-

Gene Model

Click here to download ENSORLG00020003504's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020003504's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020003504	vars	79	49.951	ENSORLG00020018584	vars2	92	50.198

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020003504	vars	100	64.919	ENSG00000204394	VARS	99	73.313	Homo_sapiens
ENSORLG00020003504	vars	94	89.469	ENSAPOG00000020691	vars	96	89.138	Acanthochromis_polyacanthus
ENSORLG00020003504	vars	94	89.469	ENSAPOG00000020921	vars	96	89.138	Acanthochromis_polyacanthus
ENSORLG00020003504	vars	100	65.177	ENSAMEG00000006417	VARS	100	65.157	Ailuropoda_melanoleuca
ENSORLG00020003504	vars	100	88.759	ENSACIG00000013752	vars	100	88.759	Amphilophus_citrinellus
ENSORLG00020003504	vars	100	89.671	ENSAOCG00000002447	vars	99	89.750	Amphiprion_ocellaris
ENSORLG00020003504	vars	100	89.515	ENSAPEG00000010638	vars	99	89.593	Amphiprion_percula
ENSORLG00020003504	vars	100	84.856	ENSATEG00000020219	vars	100	84.387	Anabas_testudineus
ENSORLG00020003504	vars	90	71.577	ENSACAG00000029133	-	99	71.379	Anolis_carolinensis
ENSORLG00020003504	vars	100	64.919	ENSANAG00000015453	VARS	100	64.919	Aotus_nancymaae
ENSORLG00020003504	vars	100	90.149	ENSACLG00000025699	vars	97	90.070	Astatotilapia_calliptera
ENSORLG00020003504	vars	96	79.397	ENSAMXG00000017716	vars	96	79.462	Astyanax_mexicanus
ENSORLG00020003504	vars	100	65.426	ENSBTAG00000005631	VARS	100	65.349	Bos_taurus
ENSORLG00020003504	vars	100	64.765	ENSCJAG00000002604	VARS	100	64.765	Callithrix_jacchus
ENSORLG00020003504	vars	100	65.271	ENSCAFG00000000636	VARS	100	65.251	Canis_familiaris
ENSORLG00020003504	vars	94	66.281	ENSCAFG00020020790	VARS	96	66.198	Canis_lupus_dingo
ENSORLG00020003504	vars	100	65.271	ENSCHIG00000011008	VARS	100	65.194	Capra_hircus
ENSORLG00020003504	vars	100	64.765	ENSTSYG00000001567	VARS	100	64.688	Carlito_syrichta
ENSORLG00020003504	vars	91	68.874	ENSCAPG00000013736	VARS	98	68.648	Cavia_aperea
ENSORLG00020003504	vars	100	64.938	ENSCPOG00000000870	VARS	100	64.729	Cavia_porcellus
ENSORLG00020003504	vars	100	64.919	ENSCCAG00000035656	VARS	100	64.765	Cebus_capucinus
ENSORLG00020003504	vars	100	65.204	ENSCATG00000022394	VARS	100	65.227	Cercocebus_atys
ENSORLG00020003504	vars	93	64.816	ENSCLAG00000009470	VARS	97	64.513	Chinchilla_lanigera
ENSORLG00020003504	vars	100	64.973	ENSCSAG00000008784	VARS	100	64.996	Chlorocebus_sabaeus
ENSORLG00020003504	vars	77	74.771	ENSCPBG00000007943	VARS	96	74.771	Chrysemys_picta_bellii
ENSORLG00020003504	vars	100	65.127	ENSCANG00000033570	VARS	100	65.150	Colobus_angolensis_palliatus
ENSORLG00020003504	vars	100	65.426	ENSCGRG00001005686	Vars	100	65.504	Cricetulus_griseus_chok1gshd
ENSORLG00020003504	vars	93	63.607	ENSCGRG00000013352	Vars	78	63.770	Cricetulus_griseus_crigri
ENSORLG00020003504	vars	100	81.797	ENSCSEG00000019652	vars	100	81.562	Cynoglossus_semilaevis
ENSORLG00020003504	vars	100	89.758	ENSCVAG00000022398	vars	100	89.601	Cyprinodon_variegatus
ENSORLG00020003504	vars	100	83.255	ENSDARG00000044575	vars	100	83.333	Danio_rerio
ENSORLG00020003504	vars	82	72.057	ENSDORG00000016433	Vars	93	72.153	Dipodomys_ordii
ENSORLG00020003504	vars	68	75.407	ENSETEG00000003824	VARS	76	75.407	Echinops_telfairi
ENSORLG00020003504	vars	57	65.937	ENSEBUG00000004637	vars	100	65.937	Eptatretus_burgeri
ENSORLG00020003504	vars	52	73.183	ENSEBUG00000007086	vars	83	73.183	Eptatretus_burgeri
ENSORLG00020003504	vars	100	65.305	ENSEASG00005015673	VARS	100	65.227	Equus_asinus_asinus
ENSORLG00020003504	vars	100	65.254	ENSECAG00000014620	VARS	100	65.408	Equus_caballus
ENSORLG00020003504	vars	72	71.679	ENSEEUG00000004116	VARS	73	71.679	Erinaceus_europaeus
ENSORLG00020003504	vars	100	83.619	ENSELUG00000006550	vars	97	83.346	Esox_lucius
ENSORLG00020003504	vars	100	65.305	ENSFCAG00000004510	VARS	100	65.382	Felis_catus
ENSORLG00020003504	vars	88	71.142	ENSFDAG00000011401	VARS	100	70.955	Fukomys_damarensis
ENSORLG00020003504	vars	100	88.585	ENSFHEG00000010672	vars	100	88.507	Fundulus_heteroclitus
ENSORLG00020003504	vars	100	81.060	ENSGMOG00000014908	vars	100	81.464	Gadus_morhua
ENSORLG00020003504	vars	100	89.367	ENSGAFG00000021630	vars	100	89.445	Gambusia_affinis
ENSORLG00020003504	vars	93	87.752	ENSGACG00000009601	vars	100	84.116	Gasterosteus_aculeatus
ENSORLG00020003504	vars	50	60.648	ENSGAGG00000006508	-	91	60.340	Gopherus_agassizii
ENSORLG00020003504	vars	100	65.073	ENSGGOG00000011364	VARS	100	65.073	Gorilla_gorilla
ENSORLG00020003504	vars	100	90.149	ENSHBUG00000017151	vars	97	90.070	Haplochromis_burtoni
ENSORLG00020003504	vars	100	65.012	ENSHGLG00000011646	VARS	100	65.089	Heterocephalus_glaber_female
ENSORLG00020003504	vars	94	61.800	ENSHGLG00100018062	VARS	99	61.445	Heterocephalus_glaber_male
ENSORLG00020003504	vars	99	84.038	ENSHCOG00000012198	vars	97	85.844	Hippocampus_comes
ENSORLG00020003504	vars	100	82.734	ENSIPUG00000005218	vars	100	82.812	Ictalurus_punctatus
ENSORLG00020003504	vars	100	65.581	ENSSTOG00000013112	VARS	100	65.426	Ictidomys_tridecemlineatus
ENSORLG00020003504	vars	100	65.275	ENSJJAG00000019749	-	100	65.039	Jaculus_jaculus
ENSORLG00020003504	vars	100	53.178	ENSJJAG00000015343	-	100	52.914	Jaculus_jaculus
ENSORLG00020003504	vars	100	85.759	ENSKMAG00000009455	vars	100	85.759	Kryptolebias_marmoratus
ENSORLG00020003504	vars	100	85.126	ENSLBEG00000010341	vars	99	85.278	Labrus_bergylta
ENSORLG00020003504	vars	94	66.858	ENSLACG00000015232	VARS	99	67.021	Latimeria_chalumnae
ENSORLG00020003504	vars	100	75.215	ENSLOCG00000004240	vars	100	74.980	Lepisosteus_oculatus
ENSORLG00020003504	vars	100	64.892	ENSLAFG00000023090	VARS	100	64.892	Loxodonta_africana
ENSORLG00020003504	vars	100	65.050	ENSMFAG00000001032	VARS	100	65.073	Macaca_fascicularis
ENSORLG00020003504	vars	100	65.050	ENSMMUG00000006828	VARS	100	65.073	Macaca_mulatta
ENSORLG00020003504	vars	100	65.050	ENSMNEG00000042072	VARS	100	65.073	Macaca_nemestrina
ENSORLG00020003504	vars	100	65.127	ENSMLEG00000039307	VARS	100	65.150	Mandrillus_leucophaeus
ENSORLG00020003504	vars	100	87.950	ENSMAMG00000003949	vars	100	88.106	Mastacembelus_armatus
ENSORLG00020003504	vars	100	90.227	ENSMZEG00005018327	vars	97	90.149	Maylandia_zebra
ENSORLG00020003504	vars	100	65.349	ENSMAUG00000006715	Vars	100	65.349	Mesocricetus_auratus
ENSORLG00020003504	vars	100	64.769	ENSMICG00000003548	VARS	100	64.688	Microcebus_murinus
ENSORLG00020003504	vars	100	64.624	ENSMOCG00000015404	Vars	100	64.679	Microtus_ochrogaster
ENSORLG00020003504	vars	100	85.368	ENSMMOG00000015801	vars	100	85.368	Mola_mola
ENSORLG00020003504	vars	100	65.127	ENSMODG00000015204	-	100	65.073	Monodelphis_domestica
ENSORLG00020003504	vars	99	87.784	ENSMALG00000022532	vars	99	87.784	Monopterus_albus
ENSORLG00020003504	vars	100	66.098	MGP_CAROLIEiJ_G0021491	Vars	100	66.020	Mus_caroli
ENSORLG00020003504	vars	100	65.943	ENSMUSG00000007029	Vars	100	65.865	Mus_musculus
ENSORLG00020003504	vars	100	65.865	MGP_PahariEiJ_G0020486	Vars	100	65.787	Mus_pahari
ENSORLG00020003504	vars	100	66.020	MGP_SPRETEiJ_G0022396	Vars	100	65.943	Mus_spretus
ENSORLG00020003504	vars	100	65.349	ENSMPUG00000010821	VARS	100	65.405	Mustela_putorius_furo
ENSORLG00020003504	vars	78	67.956	ENSMLUG00000013126	VARS	100	67.857	Myotis_lucifugus
ENSORLG00020003504	vars	100	65.221	ENSNGAG00000012151	Vars	100	65.298	Nannospalax_galili
ENSORLG00020003504	vars	100	89.758	ENSNBRG00000020520	vars	100	89.679	Neolamprologus_brichardi
ENSORLG00020003504	vars	100	64.842	ENSNLEG00000006351	VARS	100	64.842	Nomascus_leucogenys
ENSORLG00020003504	vars	94	73.246	ENSMEUG00000011378	VARS	100	63.580	Notamacropus_eugenii
ENSORLG00020003504	vars	100	65.248	ENSOPRG00000003607	VARS	100	65.194	Ochotona_princeps
ENSORLG00020003504	vars	100	64.779	ENSODEG00000017681	VARS	100	64.779	Octodon_degus
ENSORLG00020003504	vars	100	89.261	ENSONIG00000013064	vars	100	91.573	Oreochromis_niloticus
ENSORLG00020003504	vars	77	67.761	ENSOANG00000005400	VARS	98	67.681	Ornithorhynchus_anatinus
ENSORLG00020003504	vars	100	64.158	ENSOCUG00000022463	VARS	100	63.756	Oryctolagus_cuniculus
ENSORLG00020003504	vars	100	98.832	ENSORLG00000013063	vars	100	98.832	Oryzias_latipes
ENSORLG00020003504	vars	100	99.452	ENSORLG00015009001	vars	100	99.452	Oryzias_latipes_hsok
ENSORLG00020003504	vars	100	96.870	ENSOMEG00000015016	vars	100	96.870	Oryzias_melastigma
ENSORLG00020003504	vars	100	64.919	ENSOGAG00000007515	VARS	100	64.919	Otolemur_garnettii
ENSORLG00020003504	vars	100	64.919	ENSPPAG00000034012	VARS	100	64.919	Pan_paniscus
ENSORLG00020003504	vars	100	65.305	ENSPPRG00000014855	VARS	100	65.382	Panthera_pardus
ENSORLG00020003504	vars	85	69.653	ENSPTIG00000010462	VARS	94	68.784	Panthera_tigris_altaica
ENSORLG00020003504	vars	100	64.996	ENSPTRG00000017985	VARS	100	64.996	Pan_troglodytes
ENSORLG00020003504	vars	100	63.776	ENSPANG00000014565	VARS	100	63.797	Papio_anubis
ENSORLG00020003504	vars	100	81.464	ENSPKIG00000016304	vars	100	81.308	Paramormyrops_kingsleyae
ENSORLG00020003504	vars	100	83.020	ENSPMGG00000023909	vars	100	83.034	Periophthalmus_magnuspinnatus
ENSORLG00020003504	vars	100	65.349	ENSPEMG00000006639	Vars	100	65.426	Peromyscus_maniculatus_bairdii
ENSORLG00020003504	vars	100	65.271	ENSPCIG00000018553	VARS	100	65.194	Phascolarctos_cinereus
ENSORLG00020003504	vars	100	89.601	ENSPFOG00000015690	vars	100	89.601	Poecilia_formosa
ENSORLG00020003504	vars	100	89.523	ENSPLAG00000009590	vars	100	89.523	Poecilia_latipinna
ENSORLG00020003504	vars	100	89.523	ENSPMEG00000004708	vars	100	89.523	Poecilia_mexicana
ENSORLG00020003504	vars	100	78.166	ENSPREG00000013264	vars	97	92.402	Poecilia_reticulata
ENSORLG00020003504	vars	100	63.328	ENSPPYG00000016460	VARS	100	63.685	Pongo_abelii
ENSORLG00020003504	vars	86	67.140	ENSPCAG00000013565	VARS	86	67.140	Procavia_capensis
ENSORLG00020003504	vars	100	64.715	ENSPCOG00000010942	VARS	100	64.869	Propithecus_coquereli
ENSORLG00020003504	vars	100	62.587	ENSPVAG00000012403	VARS	100	62.760	Pteropus_vampyrus
ENSORLG00020003504	vars	100	90.227	ENSPNYG00000022511	vars	100	90.149	Pundamilia_nyererei
ENSORLG00020003504	vars	100	83.229	ENSPNAG00000020962	vars	100	83.463	Pygocentrus_nattereri
ENSORLG00020003504	vars	100	65.814	ENSRNOG00000000867	Vars	100	65.581	Rattus_norvegicus
ENSORLG00020003504	vars	100	65.050	ENSRBIG00000041669	VARS	100	65.073	Rhinopithecus_bieti
ENSORLG00020003504	vars	100	65.050	ENSRROG00000045490	VARS	100	65.073	Rhinopithecus_roxellana
ENSORLG00020003504	vars	100	64.302	ENSSBOG00000035402	VARS	100	64.302	Saimiri_boliviensis_boliviensis
ENSORLG00020003504	vars	100	64.362	ENSSHAG00000006937	VARS	100	64.996	Sarcophilus_harrisii
ENSORLG00020003504	vars	100	80.265	ENSSFOG00015014272	vars	98	85.366	Scleropages_formosus
ENSORLG00020003504	vars	100	87.089	ENSSMAG00000009596	vars	99	87.246	Scophthalmus_maximus
ENSORLG00020003504	vars	100	90.297	ENSSDUG00000014177	vars	100	90.297	Seriola_dumerili
ENSORLG00020003504	vars	100	89.906	ENSSLDG00000025316	vars	100	89.906	Seriola_lalandi_dorsalis
ENSORLG00020003504	vars	100	89.437	ENSSPAG00000017068	vars	100	89.515	Stegastes_partitus
ENSORLG00020003504	vars	100	64.638	ENSSSCG00000038950	VARS	100	64.715	Sus_scrofa
ENSORLG00020003504	vars	81	81.581	ENSTRUG00000012307	vars	97	81.364	Takifugu_rubripes
ENSORLG00020003504	vars	100	85.703	ENSTNIG00000008011	vars	100	85.703	Tetraodon_nigroviridis
ENSORLG00020003504	vars	100	59.675	ENSTTRG00000014128	VARS	100	59.598	Tursiops_truncatus
ENSORLG00020003504	vars	100	64.081	ENSUAMG00000010424	VARS	100	63.713	Ursus_americanus
ENSORLG00020003504	vars	100	60.201	ENSUMAG00000013486	VARS	98	64.557	Ursus_maritimus
ENSORLG00020003504	vars	100	65.635	ENSVVUG00000021323	VARS	100	65.298	Vulpes_vulpes
ENSORLG00020003504	vars	100	64.198	ENSXETG00000024076	vars	100	63.692	Xenopus_tropicalis
ENSORLG00020003504	vars	100	86.787	ENSXCOG00000019172	vars	100	86.865	Xiphophorus_couchianus
ENSORLG00020003504	vars	100	89.289	ENSXMAG00000010927	vars	100	88.837	Xiphophorus_maculatus