EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020003563 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zgc:171482
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 45351 bases
Position: chr15:21010128-21055478
Accession: ZDB-GENE-080204-84
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020002794	zf-met	PF12874.7	2.1e-27	1	4
ENSORLP00020002794	zf-met	PF12874.7	2.1e-27	2	4
ENSORLP00020002794	zf-met	PF12874.7	2.1e-27	3	4
ENSORLP00020002794	zf-met	PF12874.7	2.1e-27	4	4
ENSORLP00020022996	zf-met	PF12874.7	8.5e-15	1	2
ENSORLP00020022996	zf-met	PF12874.7	8.5e-15	2	2
ENSORLP00020002794	zf-C2H2_jaz	PF12171.8	9.7e-21	1	2
ENSORLP00020002794	zf-C2H2_jaz	PF12171.8	9.7e-21	2	2
ENSORLP00020022996	zf-C2H2_jaz	PF12171.8	2.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020010733	-	1000	-	ENSORLP00020022996	142 (aa)	-	-
ENSORLT00020010709	-	678	-	ENSORLP00020002794	225 (aa)	-	-

Gene Model

Click here to download ENSORLG00020003563's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020003563's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020003563	zgc:171482	99	63.877	ENSORLG00020019602	zmat4a	96	63.877
ENSORLG00020003563	zgc:171482	96	39.450	ENSORLG00020011469	znf346	53	39.450

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020003563	zgc:171482	100	85.590	ENSAPOG00000019970	zgc:171482	100	85.153	Acanthochromis_polyacanthus
ENSORLG00020003563	zgc:171482	82	98.291	ENSACIG00000021512	zgc:171482	87	98.291	Amphilophus_citrinellus
ENSORLG00020003563	zgc:171482	87	95.161	ENSAOCG00000000751	zgc:171482	85	98.261	Amphiprion_ocellaris
ENSORLG00020003563	zgc:171482	96	91.176	ENSAPEG00000014154	zgc:171482	98	91.176	Amphiprion_percula
ENSORLG00020003563	zgc:171482	100	83.843	ENSATEG00000001371	zgc:171482	100	84.348	Anabas_testudineus
ENSORLG00020003563	zgc:171482	95	91.852	ENSACLG00000010511	zgc:171482	94	91.852	Astatotilapia_calliptera
ENSORLG00020003563	zgc:171482	100	84.889	ENSAMXG00000002299	zgc:171482	100	85.778	Astyanax_mexicanus
ENSORLG00020003563	zgc:171482	100	86.885	ENSCSEG00000006509	zgc:171482	100	86.885	Cynoglossus_semilaevis
ENSORLG00020003563	zgc:171482	100	87.336	ENSCVAG00000013606	zgc:171482	100	87.336	Cyprinodon_variegatus
ENSORLG00020003563	zgc:171482	99	81.140	ENSDARG00000074415	zgc:171482	98	81.061	Danio_rerio
ENSORLG00020003563	zgc:171482	95	86.667	ENSELUG00000021817	zgc:171482	97	86.667	Esox_lucius
ENSORLG00020003563	zgc:171482	80	73.684	ENSELUG00000017517	-	60	85.393	Esox_lucius
ENSORLG00020003563	zgc:171482	92	94.615	ENSFHEG00000002233	zgc:171482	95	93.220	Fundulus_heteroclitus
ENSORLG00020003563	zgc:171482	100	83.406	ENSGMOG00000010508	zgc:171482	100	83.406	Gadus_morhua
ENSORLG00020003563	zgc:171482	100	90.984	ENSGAFG00000009398	zgc:171482	75	99.130	Gambusia_affinis
ENSORLG00020003563	zgc:171482	100	87.069	ENSGACG00000007680	zgc:171482	100	87.069	Gasterosteus_aculeatus
ENSORLG00020003563	zgc:171482	93	94.697	ENSHBUG00000023289	zgc:171482	99	94.697	Haplochromis_burtoni
ENSORLG00020003563	zgc:171482	87	88.889	ENSHCOG00000018086	zgc:171482	86	93.043	Hippocampus_comes
ENSORLG00020003563	zgc:171482	92	83.969	ENSIPUG00000000361	zgc:171482	93	85.156	Ictalurus_punctatus
ENSORLG00020003563	zgc:171482	100	81.659	ENSKMAG00000005077	zgc:171482	86	81.659	Kryptolebias_marmoratus
ENSORLG00020003563	zgc:171482	96	88.235	ENSLBEG00000023823	zgc:171482	97	88.235	Labrus_bergylta
ENSORLG00020003563	zgc:171482	100	80.349	ENSLOCG00000008863	zgc:171482	97	80.349	Lepisosteus_oculatus
ENSORLG00020003563	zgc:171482	99	92.373	ENSMAMG00000001031	zgc:171482	94	92.373	Mastacembelus_armatus
ENSORLG00020003563	zgc:171482	100	86.522	ENSMZEG00005027721	zgc:171482	100	86.522	Maylandia_zebra
ENSORLG00020003563	zgc:171482	89	95.276	ENSMMOG00000010523	zgc:171482	97	95.276	Mola_mola
ENSORLG00020003563	zgc:171482	100	87.336	ENSMALG00000017883	zgc:171482	100	87.336	Monopterus_albus
ENSORLG00020003563	zgc:171482	80	99.115	ENSNBRG00000021035	zgc:171482	84	99.115	Neolamprologus_brichardi
ENSORLG00020003563	zgc:171482	99	87.281	ENSONIG00000018365	zgc:171482	98	87.281	Oreochromis_niloticus
ENSORLG00020003563	zgc:171482	100	99.296	ENSORLG00000007607	zgc:171482	100	99.296	Oryzias_latipes
ENSORLG00020003563	zgc:171482	100	98.592	ENSORLG00015008552	zgc:171482	100	98.592	Oryzias_latipes_hsok
ENSORLG00020003563	zgc:171482	99	95.035	ENSOMEG00000003526	zgc:171482	99	95.035	Oryzias_melastigma
ENSORLG00020003563	zgc:171482	85	91.667	ENSPKIG00000015911	-	80	94.783	Paramormyrops_kingsleyae
ENSORLG00020003563	zgc:171482	80	88.991	ENSPKIG00000016244	zgc:171482	82	87.826	Paramormyrops_kingsleyae
ENSORLG00020003563	zgc:171482	88	93.600	ENSPMGG00000020230	zgc:171482	100	81.893	Periophthalmus_magnuspinnatus
ENSORLG00020003563	zgc:171482	99	88.571	ENSPFOG00000001974	zgc:171482	96	83.884	Poecilia_formosa
ENSORLG00020003563	zgc:171482	100	87.773	ENSPLAG00000003327	zgc:171482	100	87.773	Poecilia_latipinna
ENSORLG00020003563	zgc:171482	99	93.220	ENSPMEG00000004988	zgc:171482	100	86.283	Poecilia_mexicana
ENSORLG00020003563	zgc:171482	90	94.531	ENSPREG00000019241	zgc:171482	93	94.531	Poecilia_reticulata
ENSORLG00020003563	zgc:171482	95	91.852	ENSPNYG00000007773	zgc:171482	94	91.852	Pundamilia_nyererei
ENSORLG00020003563	zgc:171482	99	82.609	ENSPNAG00000007619	zgc:171482	97	82.403	Pygocentrus_nattereri
ENSORLG00020003563	zgc:171482	89	83.333	ENSSFOG00015016149	zgc:171482	97	85.833	Scleropages_formosus
ENSORLG00020003563	zgc:171482	94	81.203	ENSSFOG00015021238	zgc:171482	78	90.435	Scleropages_formosus
ENSORLG00020003563	zgc:171482	91	96.124	ENSSMAG00000002715	zgc:171482	83	96.124	Scophthalmus_maximus
ENSORLG00020003563	zgc:171482	95	90.370	ENSSDUG00000008773	zgc:171482	81	99.130	Seriola_dumerili
ENSORLG00020003563	zgc:171482	95	90.370	ENSSLDG00000019510	zgc:171482	81	99.130	Seriola_lalandi_dorsalis
ENSORLG00020003563	zgc:171482	87	96.774	ENSSPAG00000013724	zgc:171482	91	99.130	Stegastes_partitus
ENSORLG00020003563	zgc:171482	91	89.147	ENSTRUG00000005705	zgc:171482	68	96.522	Takifugu_rubripes
ENSORLG00020003563	zgc:171482	100	75.109	ENSTNIG00000008679	zgc:171482	100	75.109	Tetraodon_nigroviridis
ENSORLG00020003563	zgc:171482	75	81.481	ENSXETG00000013525	zmat4	76	88.889	Xenopus_tropicalis
ENSORLG00020003563	zgc:171482	100	87.395	ENSXMAG00000002641	zgc:171482	100	65.497	Xiphophorus_maculatus