EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020003706 (Gene tree)
Gene ID: -
Gene Symbol: rtcb
Alias: -
Full Name: RNA 2'%2C3'-cyclic phosphate and 5'-OH ligase
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 20799 bases
Position: chr23:22302377-22323175
Accession: ZDB-GENE-040426-2096
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020002930	RtcB	PF01139.17	1.2e-146	1	1
ENSORLP00020002920	RtcB	PF01139.17	1.5e-146	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020010475	-	1437	-	ENSORLP00020002930	478 (aa)	-	-
ENSORLT00020010498	-	1620	-	ENSORLP00020002920	505 (aa)	-	-

Gene Model

Click here to download ENSORLG00020003706's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020003706's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020003706	rtcb	100	93.861	ENSG00000100220	RTCB	100	93.861	Homo_sapiens
ENSORLG00020003706	rtcb	100	96.436	ENSAPOG00000006040	rtcb	100	96.436	Acanthochromis_polyacanthus
ENSORLG00020003706	rtcb	100	93.861	ENSAMEG00000016152	RTCB	100	93.861	Ailuropoda_melanoleuca
ENSORLG00020003706	rtcb	100	91.485	ENSACIG00000009083	rtcb	100	91.485	Amphilophus_citrinellus
ENSORLG00020003706	rtcb	100	96.436	ENSAOCG00000005662	rtcb	100	98.043	Amphiprion_ocellaris
ENSORLG00020003706	rtcb	99	93.671	ENSAPEG00000024653	rtcb	100	92.197	Amphiprion_percula
ENSORLG00020003706	rtcb	100	96.436	ENSAPEG00000024701	rtcb	100	96.436	Amphiprion_percula
ENSORLG00020003706	rtcb	100	96.436	ENSATEG00000000618	rtcb	100	96.436	Anabas_testudineus
ENSORLG00020003706	rtcb	99	94.316	ENSACAG00000014817	RTCB	100	90.944	Anolis_carolinensis
ENSORLG00020003706	rtcb	100	79.010	ENSANAG00000018191	-	91	79.010	Aotus_nancymaae
ENSORLG00020003706	rtcb	72	94.444	ENSANAG00000023724	-	84	94.444	Aotus_nancymaae
ENSORLG00020003706	rtcb	100	95.644	ENSACLG00000008367	rtcb	100	96.739	Astatotilapia_calliptera
ENSORLG00020003706	rtcb	100	95.050	ENSAMXG00000042320	rtcb	100	95.050	Astyanax_mexicanus
ENSORLG00020003706	rtcb	100	94.059	ENSBTAG00000011070	RTCB	100	94.059	Bos_taurus
ENSORLG00020003706	rtcb	99	75.527	WBGene00008877	rtcb-1	100	73.861	Caenorhabditis_elegans
ENSORLG00020003706	rtcb	100	93.663	ENSCJAG00000006128	RTCB	100	93.663	Callithrix_jacchus
ENSORLG00020003706	rtcb	100	93.861	ENSCAFG00000001785	RTCB	100	93.861	Canis_familiaris
ENSORLG00020003706	rtcb	100	89.703	ENSCAFG00000010789	-	100	89.703	Canis_familiaris
ENSORLG00020003706	rtcb	87	89.773	ENSCAFG00020018953	-	99	89.773	Canis_lupus_dingo
ENSORLG00020003706	rtcb	100	93.861	ENSCAFG00020004890	-	100	93.861	Canis_lupus_dingo
ENSORLG00020003706	rtcb	100	93.861	ENSCHIG00000027009	-	100	93.861	Capra_hircus
ENSORLG00020003706	rtcb	100	93.465	ENSTSYG00000012320	RTCB	100	93.465	Carlito_syrichta
ENSORLG00020003706	rtcb	99	94.726	ENSCAPG00000011647	RTCB	96	94.726	Cavia_aperea
ENSORLG00020003706	rtcb	100	93.663	ENSCCAG00000000618	RTCB	100	93.663	Cebus_capucinus
ENSORLG00020003706	rtcb	100	93.861	ENSCATG00000033424	RTCB	100	93.861	Cercocebus_atys
ENSORLG00020003706	rtcb	100	94.257	ENSCLAG00000007997	RTCB	100	94.257	Chinchilla_lanigera
ENSORLG00020003706	rtcb	100	93.663	ENSCSAG00000008351	RTCB	100	93.663	Chlorocebus_sabaeus
ENSORLG00020003706	rtcb	100	80.000	ENSCHOG00000009123	RTCB	100	80.000	Choloepus_hoffmanni
ENSORLG00020003706	rtcb	100	93.663	ENSCPBG00000023184	RTCB	100	93.663	Chrysemys_picta_bellii
ENSORLG00020003706	rtcb	99	84.842	ENSCING00000003830	-	100	82.178	Ciona_intestinalis
ENSORLG00020003706	rtcb	99	85.053	ENSCSAVG00000008124	-	100	81.777	Ciona_savignyi
ENSORLG00020003706	rtcb	100	90.099	ENSCANG00000001891	RTCB	100	90.099	Colobus_angolensis_palliatus
ENSORLG00020003706	rtcb	100	93.465	ENSCGRG00001011173	Rtcb	100	93.465	Cricetulus_griseus_chok1gshd
ENSORLG00020003706	rtcb	99	94.480	ENSCGRG00000009587	-	96	94.480	Cricetulus_griseus_crigri
ENSORLG00020003706	rtcb	100	96.040	ENSCSEG00000003986	rtcb	100	96.040	Cynoglossus_semilaevis
ENSORLG00020003706	rtcb	87	96.394	ENSCVAG00000000569	rtcb	95	96.394	Cyprinodon_variegatus
ENSORLG00020003706	rtcb	100	95.842	ENSDARG00000101047	rtcb	100	95.842	Danio_rerio
ENSORLG00020003706	rtcb	80	90.418	ENSDNOG00000012425	RTCB	99	90.418	Dasypus_novemcinctus
ENSORLG00020003706	rtcb	100	93.267	ENSDORG00000010855	Rtcb	100	93.267	Dipodomys_ordii
ENSORLG00020003706	rtcb	99	85.654	FBgn0032781	RtcB	99	85.089	Drosophila_melanogaster
ENSORLG00020003706	rtcb	100	87.723	ENSETEG00000001988	RTCB	100	87.723	Echinops_telfairi
ENSORLG00020003706	rtcb	100	86.535	ENSEBUG00000014235	rtcb	100	86.535	Eptatretus_burgeri
ENSORLG00020003706	rtcb	100	93.663	ENSEASG00005019059	RTCB	100	93.663	Equus_asinus_asinus
ENSORLG00020003706	rtcb	100	93.663	ENSECAG00000023998	RTCB	100	93.663	Equus_caballus
ENSORLG00020003706	rtcb	94	85.235	ENSEEUG00000006251	RTCB	100	85.235	Erinaceus_europaeus
ENSORLG00020003706	rtcb	100	83.365	ENSELUG00000009275	rtcb	100	83.365	Esox_lucius
ENSORLG00020003706	rtcb	100	93.861	ENSFCAG00000026480	RTCB	100	93.861	Felis_catus
ENSORLG00020003706	rtcb	100	94.257	ENSFALG00000013334	RTCB	100	94.257	Ficedula_albicollis
ENSORLG00020003706	rtcb	100	93.663	ENSFDAG00000018150	RTCB	100	93.663	Fukomys_damarensis
ENSORLG00020003706	rtcb	99	97.263	ENSFHEG00000009595	rtcb	100	96.238	Fundulus_heteroclitus
ENSORLG00020003706	rtcb	100	93.861	ENSGMOG00000018882	rtcb	100	93.861	Gadus_morhua
ENSORLG00020003706	rtcb	100	93.663	ENSGALG00000012611	RTCB	100	93.663	Gallus_gallus
ENSORLG00020003706	rtcb	100	96.832	ENSGAFG00000004198	rtcb	100	96.832	Gambusia_affinis
ENSORLG00020003706	rtcb	100	95.446	ENSGACG00000000586	rtcb	100	95.446	Gasterosteus_aculeatus
ENSORLG00020003706	rtcb	93	93.404	ENSGAGG00000019133	RTCB	98	93.404	Gopherus_agassizii
ENSORLG00020003706	rtcb	100	93.861	ENSGGOG00000011402	RTCB	100	93.861	Gorilla_gorilla
ENSORLG00020003706	rtcb	100	95.644	ENSHBUG00000020571	rtcb	100	95.644	Haplochromis_burtoni
ENSORLG00020003706	rtcb	100	93.663	ENSHGLG00000004492	RTCB	100	93.663	Heterocephalus_glaber_female
ENSORLG00020003706	rtcb	99	66.949	ENSHGLG00000001066	-	99	67.377	Heterocephalus_glaber_female
ENSORLG00020003706	rtcb	100	93.663	ENSHGLG00100008965	RTCB	100	93.663	Heterocephalus_glaber_male
ENSORLG00020003706	rtcb	99	95.597	ENSHCOG00000006450	rtcb	100	94.477	Hippocampus_comes
ENSORLG00020003706	rtcb	100	95.446	ENSIPUG00000015443	rtcb	100	95.446	Ictalurus_punctatus
ENSORLG00020003706	rtcb	100	93.663	ENSSTOG00000003878	RTCB	100	93.663	Ictidomys_tridecemlineatus
ENSORLG00020003706	rtcb	100	93.861	ENSJJAG00000010667	Rtcb	100	93.861	Jaculus_jaculus
ENSORLG00020003706	rtcb	99	98.105	ENSKMAG00000013178	rtcb	100	97.030	Kryptolebias_marmoratus
ENSORLG00020003706	rtcb	100	96.832	ENSLBEG00000010566	RTCB	100	96.832	Labrus_bergylta
ENSORLG00020003706	rtcb	100	95.644	ENSLBEG00000000214	rtcb	100	95.644	Labrus_bergylta
ENSORLG00020003706	rtcb	100	94.059	ENSLACG00000013033	RTCB	100	94.059	Latimeria_chalumnae
ENSORLG00020003706	rtcb	100	95.644	ENSLOCG00000016515	rtcb	99	95.644	Lepisosteus_oculatus
ENSORLG00020003706	rtcb	100	93.069	ENSLAFG00000002082	RTCB	100	93.069	Loxodonta_africana
ENSORLG00020003706	rtcb	100	93.663	ENSMFAG00000034419	RTCB	100	93.663	Macaca_fascicularis
ENSORLG00020003706	rtcb	100	93.663	ENSMMUG00000006720	RTCB	100	93.663	Macaca_mulatta
ENSORLG00020003706	rtcb	100	93.663	ENSMNEG00000040669	RTCB	100	93.663	Macaca_nemestrina
ENSORLG00020003706	rtcb	100	93.861	ENSMLEG00000040505	RTCB	100	93.861	Mandrillus_leucophaeus
ENSORLG00020003706	rtcb	100	96.832	ENSMAMG00000020676	rtcb	100	96.832	Mastacembelus_armatus
ENSORLG00020003706	rtcb	100	95.644	ENSMZEG00005018942	rtcb	100	95.644	Maylandia_zebra
ENSORLG00020003706	rtcb	100	93.294	ENSMGAG00000012805	RTCB	100	93.294	Meleagris_gallopavo
ENSORLG00020003706	rtcb	63	98.230	ENSMAUG00000008301	Rtcb	100	98.230	Mesocricetus_auratus
ENSORLG00020003706	rtcb	100	93.663	ENSMICG00000013303	-	100	93.663	Microcebus_murinus
ENSORLG00020003706	rtcb	99	76.000	ENSMICG00000036677	-	100	74.653	Microcebus_murinus
ENSORLG00020003706	rtcb	100	93.861	ENSMOCG00000002440	Rtcb	100	93.861	Microtus_ochrogaster
ENSORLG00020003706	rtcb	100	96.634	ENSMMOG00000005987	rtcb	100	96.634	Mola_mola
ENSORLG00020003706	rtcb	100	94.257	ENSMODG00000001414	RTCB	100	94.257	Monodelphis_domestica
ENSORLG00020003706	rtcb	99	97.684	ENSMALG00000007603	rtcb	100	96.634	Monopterus_albus
ENSORLG00020003706	rtcb	100	93.465	MGP_CAROLIEiJ_G0015689	Rtcb	100	93.465	Mus_caroli
ENSORLG00020003706	rtcb	100	93.465	ENSMUSG00000001783	Rtcb	100	93.465	Mus_musculus
ENSORLG00020003706	rtcb	100	93.465	MGP_PahariEiJ_G0031396	Rtcb	100	93.465	Mus_pahari
ENSORLG00020003706	rtcb	100	93.465	MGP_SPRETEiJ_G0016507	Rtcb	100	93.465	Mus_spretus
ENSORLG00020003706	rtcb	100	93.861	ENSMPUG00000012285	RTCB	100	93.861	Mustela_putorius_furo
ENSORLG00020003706	rtcb	100	91.841	ENSMLUG00000007803	RTCB	100	91.321	Myotis_lucifugus
ENSORLG00020003706	rtcb	77	88.621	ENSNGAG00000005093	Rtcb	100	88.621	Nannospalax_galili
ENSORLG00020003706	rtcb	100	95.644	ENSNBRG00000017202	rtcb	100	95.644	Neolamprologus_brichardi
ENSORLG00020003706	rtcb	100	93.861	ENSNLEG00000004960	RTCB	100	93.861	Nomascus_leucogenys
ENSORLG00020003706	rtcb	86	98.214	ENSMEUG00000007809	-	82	98.214	Notamacropus_eugenii
ENSORLG00020003706	rtcb	73	100.000	ENSOPRG00000003488	RTCB	79	100.000	Ochotona_princeps
ENSORLG00020003706	rtcb	87	98.113	ENSODEG00000013033	-	100	98.113	Octodon_degus
ENSORLG00020003706	rtcb	100	62.772	ENSODEG00000005042	-	100	62.772	Octodon_degus
ENSORLG00020003706	rtcb	100	96.634	ENSONIG00000007474	rtcb	100	96.634	Oreochromis_niloticus
ENSORLG00020003706	rtcb	100	93.861	ENSOANG00000005524	RTCB	100	93.861	Ornithorhynchus_anatinus
ENSORLG00020003706	rtcb	93	93.617	ENSOCUG00000008270	RTCB	96	93.617	Oryctolagus_cuniculus
ENSORLG00020003706	rtcb	100	99.604	ENSORLG00000020093	rtcb	100	99.604	Oryzias_latipes
ENSORLG00020003706	rtcb	100	99.802	ENSORLG00015002968	rtcb	100	99.802	Oryzias_latipes_hsok
ENSORLG00020003706	rtcb	100	98.812	ENSOMEG00000021278	rtcb	100	98.812	Oryzias_melastigma
ENSORLG00020003706	rtcb	100	93.069	ENSOGAG00000001425	RTCB	100	93.069	Otolemur_garnettii
ENSORLG00020003706	rtcb	100	93.861	ENSOARG00000018008	RTCB	100	93.861	Ovis_aries
ENSORLG00020003706	rtcb	100	93.861	ENSPPAG00000028667	RTCB	100	93.861	Pan_paniscus
ENSORLG00020003706	rtcb	100	93.861	ENSPPRG00000004038	RTCB	100	93.861	Panthera_pardus
ENSORLG00020003706	rtcb	100	89.121	ENSPTIG00000020499	RTCB	98	90.167	Panthera_tigris_altaica
ENSORLG00020003706	rtcb	100	93.861	ENSPTRG00000014287	RTCB	100	93.861	Pan_troglodytes
ENSORLG00020003706	rtcb	100	93.663	ENSPANG00000016035	RTCB	100	93.663	Papio_anubis
ENSORLG00020003706	rtcb	99	95.579	ENSPKIG00000001881	rtcb	100	94.455	Paramormyrops_kingsleyae
ENSORLG00020003706	rtcb	96	94.348	ENSPSIG00000011690	RTCB	100	94.348	Pelodiscus_sinensis
ENSORLG00020003706	rtcb	100	96.238	ENSPMGG00000016672	rtcb	100	96.238	Periophthalmus_magnuspinnatus
ENSORLG00020003706	rtcb	100	93.465	ENSPEMG00000019548	Rtcb	100	93.465	Peromyscus_maniculatus_bairdii
ENSORLG00020003706	rtcb	100	90.891	ENSPMAG00000005657	rtcb	100	90.891	Petromyzon_marinus
ENSORLG00020003706	rtcb	100	94.257	ENSPCIG00000009467	RTCB	100	94.257	Phascolarctos_cinereus
ENSORLG00020003706	rtcb	100	97.228	ENSPFOG00000003058	rtcb	100	97.228	Poecilia_formosa
ENSORLG00020003706	rtcb	100	97.030	ENSPLAG00000017663	rtcb	100	97.030	Poecilia_latipinna
ENSORLG00020003706	rtcb	100	97.228	ENSPMEG00000006227	rtcb	100	97.228	Poecilia_mexicana
ENSORLG00020003706	rtcb	100	96.634	ENSPREG00000018467	rtcb	100	96.634	Poecilia_reticulata
ENSORLG00020003706	rtcb	100	93.861	ENSPPYG00000011752	RTCB	100	93.861	Pongo_abelii
ENSORLG00020003706	rtcb	93	77.119	ENSPCAG00000013641	RTCB	100	77.119	Procavia_capensis
ENSORLG00020003706	rtcb	100	93.861	ENSPCOG00000017243	RTCB	100	93.861	Propithecus_coquereli
ENSORLG00020003706	rtcb	93	92.766	ENSPVAG00000002380	RTCB	100	92.766	Pteropus_vampyrus
ENSORLG00020003706	rtcb	100	95.644	ENSPNYG00000022760	rtcb	100	95.644	Pundamilia_nyererei
ENSORLG00020003706	rtcb	100	95.446	ENSPNAG00000009209	rtcb	100	95.446	Pygocentrus_nattereri
ENSORLG00020003706	rtcb	100	93.465	ENSRNOG00000004813	Rtcb	100	93.465	Rattus_norvegicus
ENSORLG00020003706	rtcb	100	85.771	ENSRBIG00000042090	RTCB	100	85.771	Rhinopithecus_bieti
ENSORLG00020003706	rtcb	100	88.911	ENSSBOG00000020085	-	100	88.911	Saimiri_boliviensis_boliviensis
ENSORLG00020003706	rtcb	99	94.726	ENSSHAG00000016277	RTCB	100	94.726	Sarcophilus_harrisii
ENSORLG00020003706	rtcb	100	93.663	ENSSFOG00015011572	RTCB	100	93.663	Scleropages_formosus
ENSORLG00020003706	rtcb	99	96.632	ENSSFOG00015000763	rtcb	100	95.446	Scleropages_formosus
ENSORLG00020003706	rtcb	100	93.069	ENSSMAG00000005096	rtcb	100	93.069	Scophthalmus_maximus
ENSORLG00020003706	rtcb	100	95.248	ENSSDUG00000012605	rtcb	100	95.248	Seriola_dumerili
ENSORLG00020003706	rtcb	100	95.446	ENSSLDG00000019458	rtcb	100	95.446	Seriola_lalandi_dorsalis
ENSORLG00020003706	rtcb	70	97.143	ENSSARG00000004799	-	70	97.143	Sorex_araneus
ENSORLG00020003706	rtcb	100	92.871	ENSSPUG00000012814	RTCB	100	92.871	Sphenodon_punctatus
ENSORLG00020003706	rtcb	100	96.436	ENSSPAG00000004623	rtcb	100	96.436	Stegastes_partitus
ENSORLG00020003706	rtcb	100	93.861	ENSSSCG00000000158	RTCB	100	93.861	Sus_scrofa
ENSORLG00020003706	rtcb	100	94.257	ENSTGUG00000010947	RTCB	99	94.257	Taeniopygia_guttata
ENSORLG00020003706	rtcb	96	96.957	ENSTRUG00000009880	rtcb	100	96.957	Takifugu_rubripes
ENSORLG00020003706	rtcb	100	94.851	ENSTNIG00000002484	rtcb	100	94.851	Tetraodon_nigroviridis
ENSORLG00020003706	rtcb	100	80.990	ENSTBEG00000004418	RTCB	100	80.990	Tupaia_belangeri
ENSORLG00020003706	rtcb	93	93.191	ENSTTRG00000006417	RTCB	100	93.191	Tursiops_truncatus
ENSORLG00020003706	rtcb	100	93.861	ENSUAMG00000022792	RTCB	100	93.861	Ursus_americanus
ENSORLG00020003706	rtcb	100	93.861	ENSUMAG00000017225	RTCB	100	93.861	Ursus_maritimus
ENSORLG00020003706	rtcb	100	93.663	ENSVPAG00000005375	RTCB	100	93.663	Vicugna_pacos
ENSORLG00020003706	rtcb	100	93.861	ENSVVUG00000023408	RTCB	100	94.349	Vulpes_vulpes
ENSORLG00020003706	rtcb	100	92.871	ENSXETG00000011523	rtcb	100	92.871	Xenopus_tropicalis
ENSORLG00020003706	rtcb	100	96.832	ENSXMAG00000002855	rtcb	100	96.832	Xiphophorus_maculatus