EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020003941 (Gene tree)
Gene ID: -
Gene Symbol: lsm1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 1638 bases
Position: chr9:17774317-17775954
Accession: 101156502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020003158	LSM	PF01423.22	4.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020010089	-	402	-	ENSORLP00020003158	133 (aa)	XP_004072564	H2MBB8

Gene Model

Click here to download ENSORLG00020003941's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020003941's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020003941	lsm1	100	98.496	ENSORLG00020006213	-	86	98.496

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020003941	lsm1	100	85.714	ENSG00000175324	LSM1	100	85.714	Homo_sapiens
ENSORLG00020003941	lsm1	100	96.992	ENSAPOG00000010833	lsm1	100	96.992	Acanthochromis_polyacanthus
ENSORLG00020003941	lsm1	100	85.714	ENSAMEG00000011141	LSM1	100	85.714	Ailuropoda_melanoleuca
ENSORLG00020003941	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSORLG00020003941	lsm1	100	96.992	ENSAOCG00000017997	-	100	96.992	Amphiprion_ocellaris
ENSORLG00020003941	lsm1	100	96.992	ENSAOCG00000017096	lsm1	100	96.992	Amphiprion_ocellaris
ENSORLG00020003941	lsm1	100	96.992	ENSAPEG00000011669	lsm1	100	96.992	Amphiprion_percula
ENSORLG00020003941	lsm1	100	98.496	ENSATEG00000022266	lsm1	100	98.496	Anabas_testudineus
ENSORLG00020003941	lsm1	100	85.714	ENSANAG00000027785	LSM1	100	85.714	Aotus_nancymaae
ENSORLG00020003941	lsm1	100	98.496	ENSACLG00000011400	lsm1	100	98.496	Astatotilapia_calliptera
ENSORLG00020003941	lsm1	100	84.962	ENSAMXG00000005441	lsm1	100	84.962	Astyanax_mexicanus
ENSORLG00020003941	lsm1	100	84.962	ENSBTAG00000001612	LSM1	100	84.962	Bos_taurus
ENSORLG00020003941	lsm1	87	50.847	WBGene00003076	lsm-1	90	50.847	Caenorhabditis_elegans
ENSORLG00020003941	lsm1	100	84.962	ENSCJAG00000048015	LSM1	100	84.962	Callithrix_jacchus
ENSORLG00020003941	lsm1	100	85.714	ENSCAFG00000006113	LSM1	100	85.714	Canis_familiaris
ENSORLG00020003941	lsm1	100	85.714	ENSCAFG00020001822	LSM1	100	85.714	Canis_lupus_dingo
ENSORLG00020003941	lsm1	100	85.714	ENSCHIG00000013194	LSM1	100	85.714	Capra_hircus
ENSORLG00020003941	lsm1	100	85.714	ENSTSYG00000010394	LSM1	100	85.714	Carlito_syrichta
ENSORLG00020003941	lsm1	100	85.714	ENSCPOG00000032671	LSM1	100	85.714	Cavia_porcellus
ENSORLG00020003941	lsm1	100	85.714	ENSCCAG00000037171	LSM1	100	85.714	Cebus_capucinus
ENSORLG00020003941	lsm1	100	85.714	ENSCATG00000020377	LSM1	100	85.714	Cercocebus_atys
ENSORLG00020003941	lsm1	100	84.211	ENSCLAG00000001137	LSM1	100	84.211	Chinchilla_lanigera
ENSORLG00020003941	lsm1	100	85.714	ENSCSAG00000015485	LSM1	100	85.714	Chlorocebus_sabaeus
ENSORLG00020003941	lsm1	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSORLG00020003941	lsm1	95	81.102	ENSCPBG00000006569	LSM1	86	81.102	Chrysemys_picta_bellii
ENSORLG00020003941	lsm1	99	63.636	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSORLG00020003941	lsm1	100	85.714	ENSCANG00000019173	LSM1	100	85.714	Colobus_angolensis_palliatus
ENSORLG00020003941	lsm1	80	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSORLG00020003941	lsm1	100	84.962	ENSCGRG00001024560	-	100	84.962	Cricetulus_griseus_chok1gshd
ENSORLG00020003941	lsm1	100	84.962	ENSCGRG00000006554	-	100	84.962	Cricetulus_griseus_crigri
ENSORLG00020003941	lsm1	80	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSORLG00020003941	lsm1	100	97.744	ENSCSEG00000010570	lsm1	92	97.744	Cynoglossus_semilaevis
ENSORLG00020003941	lsm1	100	95.489	ENSCSEG00000008319	lsm1	92	95.489	Cynoglossus_semilaevis
ENSORLG00020003941	lsm1	100	96.992	ENSCVAG00000003871	lsm1	100	96.992	Cyprinodon_variegatus
ENSORLG00020003941	lsm1	100	84.211	ENSDARG00000043177	lsm1	100	84.211	Danio_rerio
ENSORLG00020003941	lsm1	99	81.061	ENSDNOG00000030989	-	99	81.061	Dasypus_novemcinctus
ENSORLG00020003941	lsm1	100	85.714	ENSDNOG00000046387	-	100	85.714	Dasypus_novemcinctus
ENSORLG00020003941	lsm1	100	84.962	ENSDNOG00000032911	-	100	84.962	Dasypus_novemcinctus
ENSORLG00020003941	lsm1	89	67.227	ENSDNOG00000046620	-	100	67.227	Dasypus_novemcinctus
ENSORLG00020003941	lsm1	100	85.714	ENSDORG00000028172	Lsm1	100	85.714	Dipodomys_ordii
ENSORLG00020003941	lsm1	93	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSORLG00020003941	lsm1	100	84.211	ENSEASG00005016677	LSM1	100	84.211	Equus_asinus_asinus
ENSORLG00020003941	lsm1	100	84.211	ENSECAG00000010461	LSM1	100	84.211	Equus_caballus
ENSORLG00020003941	lsm1	100	63.910	ENSEEUG00000015181	LSM1	100	63.910	Erinaceus_europaeus
ENSORLG00020003941	lsm1	100	95.489	ENSELUG00000002322	lsm1	100	95.489	Esox_lucius
ENSORLG00020003941	lsm1	100	78.947	ENSELUG00000023374	lsm1	100	78.947	Esox_lucius
ENSORLG00020003941	lsm1	100	85.714	ENSFCAG00000039335	LSM1	100	85.714	Felis_catus
ENSORLG00020003941	lsm1	89	84.746	ENSFALG00000006723	LSM1	100	84.746	Ficedula_albicollis
ENSORLG00020003941	lsm1	100	85.714	ENSFDAG00000007658	LSM1	100	85.714	Fukomys_damarensis
ENSORLG00020003941	lsm1	100	96.992	ENSFHEG00000009556	lsm1	100	96.992	Fundulus_heteroclitus
ENSORLG00020003941	lsm1	100	96.241	ENSGMOG00000016651	lsm1	98	96.241	Gadus_morhua
ENSORLG00020003941	lsm1	100	84.211	ENSGALG00000003245	LSM1	100	84.211	Gallus_gallus
ENSORLG00020003941	lsm1	100	96.992	ENSGAFG00000011355	lsm1	100	96.992	Gambusia_affinis
ENSORLG00020003941	lsm1	100	98.496	ENSGACG00000011763	lsm1	98	98.496	Gasterosteus_aculeatus
ENSORLG00020003941	lsm1	100	87.218	ENSGAGG00000024065	LSM1	100	87.218	Gopherus_agassizii
ENSORLG00020003941	lsm1	100	85.714	ENSGGOG00000022658	LSM1	100	85.714	Gorilla_gorilla
ENSORLG00020003941	lsm1	100	98.496	ENSHBUG00000010897	lsm1	100	98.496	Haplochromis_burtoni
ENSORLG00020003941	lsm1	100	68.421	ENSHGLG00000017574	-	100	68.421	Heterocephalus_glaber_female
ENSORLG00020003941	lsm1	100	85.714	ENSHGLG00000005711	LSM1	100	85.714	Heterocephalus_glaber_female
ENSORLG00020003941	lsm1	100	68.421	ENSHGLG00100012152	-	100	68.421	Heterocephalus_glaber_male
ENSORLG00020003941	lsm1	100	85.714	ENSHGLG00100017660	LSM1	100	85.714	Heterocephalus_glaber_male
ENSORLG00020003941	lsm1	100	96.241	ENSHCOG00000017233	lsm1	100	96.241	Hippocampus_comes
ENSORLG00020003941	lsm1	100	83.459	ENSIPUG00000002312	LSM1	100	83.459	Ictalurus_punctatus
ENSORLG00020003941	lsm1	58	92.208	ENSSTOG00000026870	LSM1	94	92.208	Ictidomys_tridecemlineatus
ENSORLG00020003941	lsm1	100	84.962	ENSJJAG00000014605	-	100	84.962	Jaculus_jaculus
ENSORLG00020003941	lsm1	100	98.496	ENSKMAG00000003016	lsm1	100	98.496	Kryptolebias_marmoratus
ENSORLG00020003941	lsm1	100	97.744	ENSLBEG00000022352	lsm1	100	97.744	Labrus_bergylta
ENSORLG00020003941	lsm1	90	82.500	ENSLACG00000010947	LSM1	99	82.500	Latimeria_chalumnae
ENSORLG00020003941	lsm1	100	87.970	ENSLOCG00000015149	lsm1	100	87.970	Lepisosteus_oculatus
ENSORLG00020003941	lsm1	100	85.714	ENSLAFG00000003534	LSM1	100	85.714	Loxodonta_africana
ENSORLG00020003941	lsm1	100	85.714	ENSMFAG00000032661	LSM1	100	85.714	Macaca_fascicularis
ENSORLG00020003941	lsm1	100	85.714	ENSMLEG00000034535	LSM1	100	85.714	Mandrillus_leucophaeus
ENSORLG00020003941	lsm1	100	97.744	ENSMAMG00000007464	lsm1	100	97.744	Mastacembelus_armatus
ENSORLG00020003941	lsm1	100	98.496	ENSMZEG00005010321	lsm1	100	98.496	Maylandia_zebra
ENSORLG00020003941	lsm1	100	84.211	ENSMGAG00000002125	LSM1	100	84.211	Meleagris_gallopavo
ENSORLG00020003941	lsm1	100	85.714	ENSMICG00000030726	LSM1	100	85.714	Microcebus_murinus
ENSORLG00020003941	lsm1	100	84.962	ENSMOCG00000022817	Lsm1	100	84.962	Microtus_ochrogaster
ENSORLG00020003941	lsm1	100	96.992	ENSMMOG00000015466	lsm1	100	96.992	Mola_mola
ENSORLG00020003941	lsm1	100	86.466	ENSMODG00000010732	-	100	86.466	Monodelphis_domestica
ENSORLG00020003941	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSORLG00020003941	lsm1	100	84.962	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	Mus_caroli
ENSORLG00020003941	lsm1	100	84.962	ENSMUSG00000037296	Lsm1	100	84.962	Mus_musculus
ENSORLG00020003941	lsm1	100	84.962	MGP_PahariEiJ_G0021400	Lsm1	100	84.962	Mus_pahari
ENSORLG00020003941	lsm1	100	84.962	MGP_SPRETEiJ_G0032049	Lsm1	100	84.962	Mus_spretus
ENSORLG00020003941	lsm1	100	86.466	ENSMPUG00000009883	LSM1	100	86.466	Mustela_putorius_furo
ENSORLG00020003941	lsm1	100	85.714	ENSMLUG00000003734	LSM1	100	85.714	Myotis_lucifugus
ENSORLG00020003941	lsm1	100	84.962	ENSNGAG00000003753	Lsm1	100	84.962	Nannospalax_galili
ENSORLG00020003941	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSORLG00020003941	lsm1	100	85.714	ENSNLEG00000029390	LSM1	100	85.714	Nomascus_leucogenys
ENSORLG00020003941	lsm1	100	86.466	ENSMEUG00000014077	LSM1	100	86.466	Notamacropus_eugenii
ENSORLG00020003941	lsm1	88	81.197	ENSOPRG00000000333	LSM1	100	81.197	Ochotona_princeps
ENSORLG00020003941	lsm1	100	85.714	ENSODEG00000004834	LSM1	100	85.714	Octodon_degus
ENSORLG00020003941	lsm1	100	98.496	ENSONIG00000010782	lsm1	100	98.496	Oreochromis_niloticus
ENSORLG00020003941	lsm1	100	86.466	ENSOANG00000003256	LSM1	100	86.466	Ornithorhynchus_anatinus
ENSORLG00020003941	lsm1	100	85.714	ENSOCUG00000015399	LSM1	100	85.714	Oryctolagus_cuniculus
ENSORLG00020003941	lsm1	100	100.000	ENSORLG00000030288	lsm1	100	100.000	Oryzias_latipes
ENSORLG00020003941	lsm1	100	100.000	ENSORLG00015018350	lsm1	100	100.000	Oryzias_latipes_hsok
ENSORLG00020003941	lsm1	100	98.496	ENSOMEG00000012454	lsm1	100	98.496	Oryzias_melastigma
ENSORLG00020003941	lsm1	100	85.714	ENSOGAG00000015161	LSM1	100	85.714	Otolemur_garnettii
ENSORLG00020003941	lsm1	100	85.714	ENSOARG00000001317	LSM1	100	85.714	Ovis_aries
ENSORLG00020003941	lsm1	100	85.714	ENSPPAG00000032279	LSM1	100	85.714	Pan_paniscus
ENSORLG00020003941	lsm1	100	85.714	ENSPPRG00000014172	-	100	85.714	Panthera_pardus
ENSORLG00020003941	lsm1	100	85.714	ENSPTIG00000010289	LSM1	100	85.714	Panthera_tigris_altaica
ENSORLG00020003941	lsm1	100	85.714	ENSPTRG00000020169	LSM1	100	85.714	Pan_troglodytes
ENSORLG00020003941	lsm1	100	85.714	ENSPANG00000008814	LSM1	100	85.714	Papio_anubis
ENSORLG00020003941	lsm1	100	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSORLG00020003941	lsm1	100	88.722	ENSPKIG00000001839	lsm1	100	88.722	Paramormyrops_kingsleyae
ENSORLG00020003941	lsm1	97	82.171	ENSPSIG00000012563	LSM1	98	82.171	Pelodiscus_sinensis
ENSORLG00020003941	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSORLG00020003941	lsm1	85	73.451	ENSPMAG00000002671	lsm1	100	73.451	Petromyzon_marinus
ENSORLG00020003941	lsm1	100	84.962	ENSPCIG00000008880	LSM1	100	84.962	Phascolarctos_cinereus
ENSORLG00020003941	lsm1	100	96.992	ENSPFOG00000016029	lsm1	100	96.992	Poecilia_formosa
ENSORLG00020003941	lsm1	100	96.992	ENSPLAG00000007879	lsm1	100	96.992	Poecilia_latipinna
ENSORLG00020003941	lsm1	100	96.992	ENSPMEG00000023550	lsm1	100	96.992	Poecilia_mexicana
ENSORLG00020003941	lsm1	100	96.992	ENSPREG00000009574	lsm1	100	96.992	Poecilia_reticulata
ENSORLG00020003941	lsm1	100	85.714	ENSPPYG00000018521	LSM1	100	85.714	Pongo_abelii
ENSORLG00020003941	lsm1	100	85.714	ENSPCOG00000020901	-	100	85.714	Propithecus_coquereli
ENSORLG00020003941	lsm1	100	85.714	ENSPVAG00000006016	LSM1	100	85.714	Pteropus_vampyrus
ENSORLG00020003941	lsm1	100	98.496	ENSPNYG00000018067	lsm1	100	98.496	Pundamilia_nyererei
ENSORLG00020003941	lsm1	100	84.211	ENSPNAG00000013707	lsm1	100	84.211	Pygocentrus_nattereri
ENSORLG00020003941	lsm1	100	84.211	ENSRNOG00000015375	Lsm1	100	84.211	Rattus_norvegicus
ENSORLG00020003941	lsm1	100	85.714	ENSRBIG00000027449	LSM1	100	85.714	Rhinopithecus_bieti
ENSORLG00020003941	lsm1	100	85.714	ENSRROG00000036074	LSM1	100	85.714	Rhinopithecus_roxellana
ENSORLG00020003941	lsm1	83	43.966	YJL124C	LSM1	67	43.966	Saccharomyces_cerevisiae
ENSORLG00020003941	lsm1	100	86.466	ENSSHAG00000017260	LSM1	100	86.466	Sarcophilus_harrisii
ENSORLG00020003941	lsm1	100	87.970	ENSSFOG00015019528	lsm1	100	87.970	Scleropages_formosus
ENSORLG00020003941	lsm1	100	98.496	ENSSMAG00000004930	lsm1	100	98.496	Scophthalmus_maximus
ENSORLG00020003941	lsm1	100	96.992	ENSSDUG00000021823	lsm1	100	96.992	Seriola_dumerili
ENSORLG00020003941	lsm1	100	96.992	ENSSLDG00000012154	lsm1	100	96.992	Seriola_lalandi_dorsalis
ENSORLG00020003941	lsm1	100	87.218	ENSSPUG00000014878	LSM1	100	87.218	Sphenodon_punctatus
ENSORLG00020003941	lsm1	100	97.744	ENSSPAG00000020548	lsm1	100	97.744	Stegastes_partitus
ENSORLG00020003941	lsm1	100	85.714	ENSSSCG00000039058	LSM1	100	85.714	Sus_scrofa
ENSORLG00020003941	lsm1	100	86.466	ENSTGUG00000004793	LSM1	100	86.466	Taeniopygia_guttata
ENSORLG00020003941	lsm1	100	96.992	ENSTRUG00000025239	lsm1	100	96.992	Takifugu_rubripes
ENSORLG00020003941	lsm1	100	93.985	ENSTNIG00000004055	lsm1	100	93.985	Tetraodon_nigroviridis
ENSORLG00020003941	lsm1	88	83.761	ENSTBEG00000015884	LSM1	100	83.761	Tupaia_belangeri
ENSORLG00020003941	lsm1	100	85.714	ENSTTRG00000004482	LSM1	100	85.714	Tursiops_truncatus
ENSORLG00020003941	lsm1	100	85.714	ENSUAMG00000004103	LSM1	100	85.714	Ursus_americanus
ENSORLG00020003941	lsm1	100	85.714	ENSUMAG00000009132	LSM1	100	85.714	Ursus_maritimus
ENSORLG00020003941	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSORLG00020003941	lsm1	100	85.714	ENSVVUG00000020191	LSM1	100	85.714	Vulpes_vulpes
ENSORLG00020003941	lsm1	61	65.432	ENSVVUG00000014880	-	86	65.432	Vulpes_vulpes
ENSORLG00020003941	lsm1	100	81.752	ENSXETG00000009004	lsm1	100	81.752	Xenopus_tropicalis
ENSORLG00020003941	lsm1	100	95.489	ENSXCOG00000015631	lsm1	100	95.489	Xiphophorus_couchianus
ENSORLG00020003941	lsm1	100	95.489	ENSXMAG00000026637	lsm1	100	95.489	Xiphophorus_maculatus