EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020004376 (Gene tree)
Gene ID: -
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 2161 bases
Position: chr23:21887628-21889788
Accession: ZDB-GENE-070629-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020023500	LSM	PF01423.22	2.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020009377	-	285	-	ENSORLP00020023500	94 (aa)	-	-

Gene Model

Click here to download ENSORLG00020004376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020004376's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020004376	lsm8	100	82.292	ENSG00000128534	LSM8	96	97.222	Homo_sapiens
ENSORLG00020004376	lsm8	100	87.500	ENSAPOG00000008649	lsm8	100	87.500	Acanthochromis_polyacanthus
ENSORLG00020004376	lsm8	100	82.292	ENSAMEG00000001162	LSM8	100	82.292	Ailuropoda_melanoleuca
ENSORLG00020004376	lsm8	77	100.000	ENSACIG00000014694	lsm8	96	100.000	Amphilophus_citrinellus
ENSORLG00020004376	lsm8	100	87.500	ENSAOCG00000013926	lsm8	100	87.500	Amphiprion_ocellaris
ENSORLG00020004376	lsm8	100	87.500	ENSAPEG00000023502	lsm8	100	87.500	Amphiprion_percula
ENSORLG00020004376	lsm8	77	100.000	ENSATEG00000023432	lsm8	96	100.000	Anabas_testudineus
ENSORLG00020004376	lsm8	100	77.778	ENSAPLG00000005115	LSM8	100	77.778	Anas_platyrhynchos
ENSORLG00020004376	lsm8	100	82.292	ENSANAG00000027771	LSM8	97	97.222	Aotus_nancymaae
ENSORLG00020004376	lsm8	100	87.500	ENSACLG00000011253	lsm8	100	87.500	Astatotilapia_calliptera
ENSORLG00020004376	lsm8	100	86.458	ENSAMXG00000042902	lsm8	100	86.458	Astyanax_mexicanus
ENSORLG00020004376	lsm8	100	82.292	ENSBTAG00000012649	LSM8	100	82.292	Bos_taurus
ENSORLG00020004376	lsm8	98	47.872	WBGene00003082	lsm-8	96	47.872	Caenorhabditis_elegans
ENSORLG00020004376	lsm8	100	82.292	ENSCJAG00000046406	LSM8	97	97.222	Callithrix_jacchus
ENSORLG00020004376	lsm8	98	82.979	ENSCAFG00000016459	LSM8	95	82.979	Canis_familiaris
ENSORLG00020004376	lsm8	88	80.000	ENSCAFG00020012800	-	66	80.000	Canis_lupus_dingo
ENSORLG00020004376	lsm8	100	82.292	ENSCAFG00020007643	-	100	82.292	Canis_lupus_dingo
ENSORLG00020004376	lsm8	77	97.222	ENSCHIG00000014201	LSM8	77	97.222	Capra_hircus
ENSORLG00020004376	lsm8	100	82.292	ENSTSYG00000032434	LSM8	100	82.292	Carlito_syrichta
ENSORLG00020004376	lsm8	77	97.222	ENSCAPG00000008253	LSM8	97	97.222	Cavia_aperea
ENSORLG00020004376	lsm8	100	82.292	ENSCPOG00000035673	LSM8	100	82.292	Cavia_porcellus
ENSORLG00020004376	lsm8	100	82.292	ENSCCAG00000021329	LSM8	97	97.222	Cebus_capucinus
ENSORLG00020004376	lsm8	100	82.292	ENSCATG00000045302	LSM8	97	97.222	Cercocebus_atys
ENSORLG00020004376	lsm8	100	82.292	ENSCLAG00000003726	LSM8	100	82.292	Chinchilla_lanigera
ENSORLG00020004376	lsm8	100	81.250	ENSCSAG00000019007	-	100	81.250	Chlorocebus_sabaeus
ENSORLG00020004376	lsm8	100	82.292	ENSCSAG00000010802	-	100	82.292	Chlorocebus_sabaeus
ENSORLG00020004376	lsm8	77	97.222	ENSCPBG00000008154	LSM8	73	97.222	Chrysemys_picta_bellii
ENSORLG00020004376	lsm8	100	64.583	ENSCING00000024877	-	100	64.583	Ciona_intestinalis
ENSORLG00020004376	lsm8	100	82.292	ENSCANG00000040728	LSM8	97	97.222	Colobus_angolensis_palliatus
ENSORLG00020004376	lsm8	100	82.292	ENSCGRG00001000450	Lsm8	100	82.292	Cricetulus_griseus_chok1gshd
ENSORLG00020004376	lsm8	77	97.222	ENSCGRG00000005587	Lsm8	85	97.222	Cricetulus_griseus_crigri
ENSORLG00020004376	lsm8	100	88.298	ENSCSEG00000004164	lsm8	100	88.298	Cynoglossus_semilaevis
ENSORLG00020004376	lsm8	100	86.458	ENSCVAG00000020547	lsm8	100	86.458	Cyprinodon_variegatus
ENSORLG00020004376	lsm8	100	84.375	ENSDARG00000091656	lsm8	100	84.375	Danio_rerio
ENSORLG00020004376	lsm8	100	82.292	ENSDNOG00000034613	LSM8	100	82.292	Dasypus_novemcinctus
ENSORLG00020004376	lsm8	100	82.292	ENSDORG00000027868	Lsm8	100	82.292	Dipodomys_ordii
ENSORLG00020004376	lsm8	98	63.830	FBgn0035271	CG2021	99	63.830	Drosophila_melanogaster
ENSORLG00020004376	lsm8	100	83.333	ENSETEG00000011594	LSM8	100	83.333	Echinops_telfairi
ENSORLG00020004376	lsm8	77	95.833	ENSEBUG00000012017	lsm8	97	95.833	Eptatretus_burgeri
ENSORLG00020004376	lsm8	100	82.292	ENSEASG00005008932	LSM8	62	82.292	Equus_asinus_asinus
ENSORLG00020004376	lsm8	91	83.721	ENSECAG00000024025	LSM8	65	97.222	Equus_caballus
ENSORLG00020004376	lsm8	100	84.375	ENSELUG00000010138	lsm8	100	84.375	Esox_lucius
ENSORLG00020004376	lsm8	100	82.292	ENSFCAG00000036620	-	100	82.292	Felis_catus
ENSORLG00020004376	lsm8	85	59.756	ENSFCAG00000044794	-	83	59.756	Felis_catus
ENSORLG00020004376	lsm8	100	83.333	ENSFALG00000010023	LSM8	100	83.333	Ficedula_albicollis
ENSORLG00020004376	lsm8	100	82.292	ENSFDAG00000019530	LSM8	100	82.292	Fukomys_damarensis
ENSORLG00020004376	lsm8	100	87.500	ENSFHEG00000013729	lsm8	100	87.500	Fundulus_heteroclitus
ENSORLG00020004376	lsm8	100	83.333	ENSGALG00000009110	LSM8	100	83.333	Gallus_gallus
ENSORLG00020004376	lsm8	100	86.458	ENSGAFG00000001135	lsm8	100	86.458	Gambusia_affinis
ENSORLG00020004376	lsm8	100	82.292	ENSGAGG00000017366	LSM8	100	82.292	Gopherus_agassizii
ENSORLG00020004376	lsm8	100	82.292	ENSGGOG00000041883	LSM8	100	82.292	Gorilla_gorilla
ENSORLG00020004376	lsm8	100	87.500	ENSHBUG00000003646	lsm8	100	87.500	Haplochromis_burtoni
ENSORLG00020004376	lsm8	70	77.941	ENSHGLG00000001988	-	99	77.941	Heterocephalus_glaber_female
ENSORLG00020004376	lsm8	100	78.125	ENSHGLG00000019782	-	100	78.125	Heterocephalus_glaber_female
ENSORLG00020004376	lsm8	98	80.851	ENSHGLG00100003934	-	94	80.851	Heterocephalus_glaber_male
ENSORLG00020004376	lsm8	100	78.125	ENSHGLG00100012166	-	100	78.125	Heterocephalus_glaber_male
ENSORLG00020004376	lsm8	100	86.458	ENSHCOG00000005037	lsm8	100	86.458	Hippocampus_comes
ENSORLG00020004376	lsm8	100	86.458	ENSIPUG00000019811	NAA38	100	86.458	Ictalurus_punctatus
ENSORLG00020004376	lsm8	91	72.727	ENSSTOG00000034801	-	81	72.727	Ictidomys_tridecemlineatus
ENSORLG00020004376	lsm8	100	82.292	ENSSTOG00000009039	LSM8	100	82.292	Ictidomys_tridecemlineatus
ENSORLG00020004376	lsm8	100	82.292	ENSJJAG00000009031	Lsm8	99	82.292	Jaculus_jaculus
ENSORLG00020004376	lsm8	100	87.500	ENSKMAG00000018983	lsm8	100	87.500	Kryptolebias_marmoratus
ENSORLG00020004376	lsm8	100	82.292	ENSLACG00000010231	LSM8	100	82.292	Latimeria_chalumnae
ENSORLG00020004376	lsm8	100	85.417	ENSLOCG00000015580	lsm8	100	85.417	Lepisosteus_oculatus
ENSORLG00020004376	lsm8	100	80.412	ENSLAFG00000011242	LSM8	100	80.412	Loxodonta_africana
ENSORLG00020004376	lsm8	100	82.292	ENSMFAG00000035798	LSM8	97	97.222	Macaca_fascicularis
ENSORLG00020004376	lsm8	100	79.167	ENSMFAG00000013044	-	100	79.167	Macaca_fascicularis
ENSORLG00020004376	lsm8	100	82.292	ENSMMUG00000046401	LSM8	97	97.222	Macaca_mulatta
ENSORLG00020004376	lsm8	100	82.292	ENSMNEG00000036764	-	97	97.222	Macaca_nemestrina
ENSORLG00020004376	lsm8	77	94.444	ENSMNEG00000011141	-	96	94.444	Macaca_nemestrina
ENSORLG00020004376	lsm8	100	68.750	ENSMLEG00000039324	-	100	68.750	Mandrillus_leucophaeus
ENSORLG00020004376	lsm8	100	82.292	ENSMLEG00000035828	-	97	97.222	Mandrillus_leucophaeus
ENSORLG00020004376	lsm8	77	100.000	ENSMAMG00000018839	lsm8	96	100.000	Mastacembelus_armatus
ENSORLG00020004376	lsm8	100	87.500	ENSMZEG00005019138	lsm8	100	87.500	Maylandia_zebra
ENSORLG00020004376	lsm8	100	83.333	ENSMGAG00000008808	LSM8	100	83.333	Meleagris_gallopavo
ENSORLG00020004376	lsm8	100	64.583	ENSMAUG00000015356	-	100	64.583	Mesocricetus_auratus
ENSORLG00020004376	lsm8	100	76.042	ENSMAUG00000015721	-	100	76.042	Mesocricetus_auratus
ENSORLG00020004376	lsm8	79	89.189	ENSMAUG00000020287	-	97	90.278	Mesocricetus_auratus
ENSORLG00020004376	lsm8	100	82.292	ENSMICG00000042730	LSM8	100	82.292	Microcebus_murinus
ENSORLG00020004376	lsm8	100	82.292	ENSMOCG00000001688	Lsm8	100	82.292	Microtus_ochrogaster
ENSORLG00020004376	lsm8	77	100.000	ENSMMOG00000006046	lsm8	96	100.000	Mola_mola
ENSORLG00020004376	lsm8	74	84.722	ENSMODG00000015729	LSM8	92	84.722	Monodelphis_domestica
ENSORLG00020004376	lsm8	100	87.500	ENSMALG00000000405	lsm8	100	87.500	Monopterus_albus
ENSORLG00020004376	lsm8	100	82.292	MGP_CAROLIEiJ_G0028125	-	100	82.292	Mus_caroli
ENSORLG00020004376	lsm8	100	82.292	ENSMUSG00000044155	Lsm8	100	82.292	Mus_musculus
ENSORLG00020004376	lsm8	100	82.292	MGP_PahariEiJ_G0021881	Lsm8	96	97.222	Mus_pahari
ENSORLG00020004376	lsm8	100	82.292	MGP_SPRETEiJ_G0029125	-	100	82.292	Mus_spretus
ENSORLG00020004376	lsm8	100	82.292	ENSMLUG00000006837	-	100	82.292	Myotis_lucifugus
ENSORLG00020004376	lsm8	100	81.250	ENSMLUG00000027762	-	100	81.250	Myotis_lucifugus
ENSORLG00020004376	lsm8	100	82.292	ENSNGAG00000016554	Lsm8	100	82.292	Nannospalax_galili
ENSORLG00020004376	lsm8	100	87.500	ENSNBRG00000014441	lsm8	100	87.500	Neolamprologus_brichardi
ENSORLG00020004376	lsm8	100	82.292	ENSNLEG00000011768	LSM8	100	82.292	Nomascus_leucogenys
ENSORLG00020004376	lsm8	100	71.875	ENSMEUG00000007801	LSM8	100	71.875	Notamacropus_eugenii
ENSORLG00020004376	lsm8	77	97.222	ENSOPRG00000014809	LSM8	85	97.222	Ochotona_princeps
ENSORLG00020004376	lsm8	89	66.279	ENSODEG00000020290	-	100	66.279	Octodon_degus
ENSORLG00020004376	lsm8	100	82.292	ENSODEG00000000418	-	100	82.292	Octodon_degus
ENSORLG00020004376	lsm8	100	81.250	ENSOANG00000014536	LSM8	100	81.250	Ornithorhynchus_anatinus
ENSORLG00020004376	lsm8	100	80.412	ENSOCUG00000017359	LSM8	100	80.412	Oryctolagus_cuniculus
ENSORLG00020004376	lsm8	100	100.000	ENSORLG00000017432	lsm8	100	100.000	Oryzias_latipes
ENSORLG00020004376	lsm8	100	88.542	ENSORLG00015003757	lsm8	100	88.542	Oryzias_latipes_hsok
ENSORLG00020004376	lsm8	100	88.298	ENSOMEG00000022509	lsm8	100	89.362	Oryzias_melastigma
ENSORLG00020004376	lsm8	100	82.292	ENSOGAG00000013377	LSM8	100	82.292	Otolemur_garnettii
ENSORLG00020004376	lsm8	100	82.292	ENSOARG00000017974	LSM8	100	82.292	Ovis_aries
ENSORLG00020004376	lsm8	77	97.222	ENSPPAG00000043228	-	96	97.222	Pan_paniscus
ENSORLG00020004376	lsm8	100	82.292	ENSPPRG00000006444	LSM8	100	82.292	Panthera_pardus
ENSORLG00020004376	lsm8	100	82.292	ENSPTIG00000004722	LSM8	100	82.292	Panthera_tigris_altaica
ENSORLG00020004376	lsm8	77	97.222	ENSPTRG00000046596	-	96	97.222	Pan_troglodytes
ENSORLG00020004376	lsm8	100	77.083	ENSPANG00000019395	-	100	77.083	Papio_anubis
ENSORLG00020004376	lsm8	100	82.292	ENSPANG00000035470	-	97	97.222	Papio_anubis
ENSORLG00020004376	lsm8	77	97.222	ENSPKIG00000006092	lsm8	73	97.222	Paramormyrops_kingsleyae
ENSORLG00020004376	lsm8	77	97.222	ENSPSIG00000017054	LSM8	96	97.222	Pelodiscus_sinensis
ENSORLG00020004376	lsm8	77	100.000	ENSPMGG00000016442	lsm8	96	100.000	Periophthalmus_magnuspinnatus
ENSORLG00020004376	lsm8	79	95.946	ENSPEMG00000009153	Lsm8	100	95.946	Peromyscus_maniculatus_bairdii
ENSORLG00020004376	lsm8	97	82.796	ENSPCIG00000021467	LSM8	98	82.796	Phascolarctos_cinereus
ENSORLG00020004376	lsm8	100	86.458	ENSPFOG00000012340	lsm8	100	86.458	Poecilia_formosa
ENSORLG00020004376	lsm8	77	98.611	ENSPLAG00000000516	lsm8	75	98.611	Poecilia_latipinna
ENSORLG00020004376	lsm8	100	86.458	ENSPMEG00000022567	lsm8	100	86.458	Poecilia_mexicana
ENSORLG00020004376	lsm8	77	88.608	ENSPREG00000005527	lsm8	71	88.608	Poecilia_reticulata
ENSORLG00020004376	lsm8	100	82.292	ENSPPYG00000017942	LSM8	100	82.292	Pongo_abelii
ENSORLG00020004376	lsm8	97	64.516	ENSPCOG00000017982	-	97	64.516	Propithecus_coquereli
ENSORLG00020004376	lsm8	100	82.292	ENSPCOG00000003309	-	100	82.292	Propithecus_coquereli
ENSORLG00020004376	lsm8	77	95.833	ENSPVAG00000000990	LSM8	85	95.833	Pteropus_vampyrus
ENSORLG00020004376	lsm8	100	87.500	ENSPNYG00000011448	lsm8	100	87.500	Pundamilia_nyererei
ENSORLG00020004376	lsm8	100	86.458	ENSPNAG00000010252	lsm8	100	86.458	Pygocentrus_nattereri
ENSORLG00020004376	lsm8	100	82.292	ENSRNOG00000058677	Lsm8	100	82.292	Rattus_norvegicus
ENSORLG00020004376	lsm8	100	82.292	ENSRBIG00000032851	LSM8	97	97.222	Rhinopithecus_bieti
ENSORLG00020004376	lsm8	100	82.292	ENSRROG00000039618	LSM8	97	97.222	Rhinopithecus_roxellana
ENSORLG00020004376	lsm8	100	82.292	ENSSBOG00000023223	LSM8	97	97.222	Saimiri_boliviensis_boliviensis
ENSORLG00020004376	lsm8	100	82.292	ENSSHAG00000018435	-	100	82.292	Sarcophilus_harrisii
ENSORLG00020004376	lsm8	100	84.375	ENSSFOG00015004412	lsm8	100	84.375	Scleropages_formosus
ENSORLG00020004376	lsm8	77	97.222	ENSSMAG00000009458	lsm8	96	97.222	Scophthalmus_maximus
ENSORLG00020004376	lsm8	100	87.500	ENSSDUG00000014702	lsm8	100	87.500	Seriola_dumerili
ENSORLG00020004376	lsm8	77	100.000	ENSSLDG00000016870	lsm8	96	100.000	Seriola_lalandi_dorsalis
ENSORLG00020004376	lsm8	77	97.222	ENSSARG00000009628	-	100	97.222	Sorex_araneus
ENSORLG00020004376	lsm8	100	82.292	ENSSPUG00000017419	LSM8	100	82.292	Sphenodon_punctatus
ENSORLG00020004376	lsm8	100	87.500	ENSSPAG00000021422	lsm8	100	87.500	Stegastes_partitus
ENSORLG00020004376	lsm8	100	82.292	ENSSSCG00000021652	LSM8	100	82.292	Sus_scrofa
ENSORLG00020004376	lsm8	100	83.333	ENSTGUG00000004730	-	100	83.333	Taeniopygia_guttata
ENSORLG00020004376	lsm8	100	82.292	ENSTGUG00000016823	-	100	82.292	Taeniopygia_guttata
ENSORLG00020004376	lsm8	100	87.500	ENSTRUG00000025192	lsm8	100	87.500	Takifugu_rubripes
ENSORLG00020004376	lsm8	100	87.500	ENSTNIG00000002864	lsm8	100	87.500	Tetraodon_nigroviridis
ENSORLG00020004376	lsm8	100	82.292	ENSTTRG00000001023	LSM8	100	82.292	Tursiops_truncatus
ENSORLG00020004376	lsm8	77	97.222	ENSUAMG00000006943	-	75	97.222	Ursus_americanus
ENSORLG00020004376	lsm8	77	97.222	ENSUMAG00000003073	LSM8	77	97.222	Ursus_maritimus
ENSORLG00020004376	lsm8	100	82.292	ENSVPAG00000001530	LSM8	100	82.292	Vicugna_pacos
ENSORLG00020004376	lsm8	99	78.495	ENSVVUG00000013248	-	99	78.495	Vulpes_vulpes
ENSORLG00020004376	lsm8	93	83.146	ENSXETG00000021829	lsm8	92	83.146	Xenopus_tropicalis
ENSORLG00020004376	lsm8	100	85.417	ENSXCOG00000012938	lsm8	100	85.417	Xiphophorus_couchianus
ENSORLG00020004376	lsm8	100	86.458	ENSXMAG00000025919	lsm8	100	86.458	Xiphophorus_maculatus