EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020004464 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: -
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 10378 bases
Position: chr17:17891754-17902131
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020023556	RRM_1	PF00076.22	9.5e-31	1	2
ENSORLP00020023556	RRM_1	PF00076.22	9.5e-31	2	2
ENSORLP00020023549	RRM_1	PF00076.22	6.8e-28	1	2
ENSORLP00020023549	RRM_1	PF00076.22	6.8e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020009241	-	4987	-	ENSORLP00020023549	326 (aa)	-	-
ENSORLT00020009229	-	4790	-	ENSORLP00020023556	343 (aa)	-	-

Gene Model

Click here to download ENSORLG00020004464's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020004464's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020004464	trnau1apb	98	41.745	ENSORLG00020000926	trnau1ap	94	41.566
ENSORLG00020004464	trnau1apb	50	32.571	ENSORLG00020021205	tia1	68	32.571
ENSORLG00020004464	trnau1apb	62	31.443	ENSORLG00020018644	pabpc4	57	33.143
ENSORLG00020004464	trnau1apb	67	30.857	ENSORLG00020013161	tia1l	68	30.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020004464	trnau1apb	99	69.883	ENSAPOG00000010086	trnau1apb	100	77.485	Acanthochromis_polyacanthus
ENSORLG00020004464	trnau1apb	99	77.937	ENSACIG00000001863	trnau1apb	100	74.785	Amphilophus_citrinellus
ENSORLG00020004464	trnau1apb	100	85.890	ENSAOCG00000011891	trnau1apb	100	86.550	Amphiprion_ocellaris
ENSORLG00020004464	trnau1apb	100	80.982	ENSAPEG00000008029	trnau1apb	100	85.965	Amphiprion_percula
ENSORLG00020004464	trnau1apb	100	87.117	ENSATEG00000002196	trnau1apb	100	87.719	Anabas_testudineus
ENSORLG00020004464	trnau1apb	99	78.551	ENSACLG00000003016	trnau1apb	100	75.362	Astatotilapia_calliptera
ENSORLG00020004464	trnau1apb	99	64.223	ENSAMXG00000001805	trnau1apb	99	64.706	Astyanax_mexicanus
ENSORLG00020004464	trnau1apb	99	79.532	ENSCSEG00000018215	trnau1apb	99	79.532	Cynoglossus_semilaevis
ENSORLG00020004464	trnau1apb	100	80.606	ENSCVAG00000017866	trnau1apb	100	78.485	Cyprinodon_variegatus
ENSORLG00020004464	trnau1apb	99	62.209	ENSDARG00000056475	trnau1apb	98	63.235	Danio_rerio
ENSORLG00020004464	trnau1apb	99	63.081	ENSELUG00000016683	trnau1apb	99	64.244	Esox_lucius
ENSORLG00020004464	trnau1apb	100	80.403	ENSFHEG00000001267	trnau1apb	100	81.322	Fundulus_heteroclitus
ENSORLG00020004464	trnau1apb	99	70.487	ENSGMOG00000001160	trnau1apb	100	72.807	Gadus_morhua
ENSORLG00020004464	trnau1apb	99	63.663	ENSGAFG00000006770	trnau1apb	100	65.805	Gambusia_affinis
ENSORLG00020004464	trnau1apb	99	76.608	ENSGACG00000014944	trnau1apb	100	76.901	Gasterosteus_aculeatus
ENSORLG00020004464	trnau1apb	75	38.618	ENSGAGG00000022384	-	78	38.618	Gopherus_agassizii
ENSORLG00020004464	trnau1apb	100	84.840	ENSHBUG00000018944	trnau1apb	100	83.382	Haplochromis_burtoni
ENSORLG00020004464	trnau1apb	67	81.739	ENSHCOG00000011350	trnau1apb	78	80.000	Hippocampus_comes
ENSORLG00020004464	trnau1apb	99	65.889	ENSIPUG00000008843	tsp1l	99	65.588	Ictalurus_punctatus
ENSORLG00020004464	trnau1apb	100	78.488	ENSKMAG00000010082	trnau1apb	100	83.140	Kryptolebias_marmoratus
ENSORLG00020004464	trnau1apb	100	82.209	ENSLBEG00000020480	trnau1apb	100	83.041	Labrus_bergylta
ENSORLG00020004464	trnau1apb	99	53.009	ENSLOCG00000013175	trnau1apb	99	54.783	Lepisosteus_oculatus
ENSORLG00020004464	trnau1apb	100	83.436	ENSMAMG00000012192	trnau1apb	100	84.211	Mastacembelus_armatus
ENSORLG00020004464	trnau1apb	100	84.840	ENSMZEG00005014852	trnau1apb	100	83.382	Maylandia_zebra
ENSORLG00020004464	trnau1apb	75	38.211	ENSMGAG00000003234	-	99	36.290	Meleagris_gallopavo
ENSORLG00020004464	trnau1apb	97	73.775	ENSMMOG00000021521	trnau1apb	100	72.911	Mola_mola
ENSORLG00020004464	trnau1apb	99	72.059	ENSMALG00000003772	trnau1apb	100	71.637	Monopterus_albus
ENSORLG00020004464	trnau1apb	97	78.635	ENSNBRG00000000751	trnau1apb	99	75.371	Neolamprologus_brichardi
ENSORLG00020004464	trnau1apb	99	74.336	ENSONIG00000016639	trnau1apb	100	71.471	Oreochromis_niloticus
ENSORLG00020004464	trnau1apb	100	99.420	ENSORLG00000013265	trnau1apb	100	99.420	Oryzias_latipes
ENSORLG00020004464	trnau1apb	100	99.708	ENSORLG00015021098	trnau1apb	100	99.708	Oryzias_latipes_hsok
ENSORLG00020004464	trnau1apb	100	91.768	ENSOMEG00000016531	trnau1apb	100	94.203	Oryzias_melastigma
ENSORLG00020004464	trnau1apb	99	57.803	ENSPKIG00000007995	trnau1apb	99	57.865	Paramormyrops_kingsleyae
ENSORLG00020004464	trnau1apb	75	40.650	ENSPSIG00000004189	-	78	39.024	Pelodiscus_sinensis
ENSORLG00020004464	trnau1apb	70	82.243	ENSPMGG00000018509	trnau1apb	88	82.243	Periophthalmus_magnuspinnatus
ENSORLG00020004464	trnau1apb	100	81.268	ENSPFOG00000003938	trnau1apb	100	76.657	Poecilia_formosa
ENSORLG00020004464	trnau1apb	100	81.268	ENSPLAG00000015480	trnau1apb	100	76.657	Poecilia_latipinna
ENSORLG00020004464	trnau1apb	100	81.268	ENSPMEG00000012743	trnau1apb	100	76.657	Poecilia_mexicana
ENSORLG00020004464	trnau1apb	100	80.460	ENSPREG00000015035	trnau1apb	100	75.575	Poecilia_reticulata
ENSORLG00020004464	trnau1apb	100	77.508	ENSPNYG00000012127	trnau1apb	100	72.754	Pundamilia_nyererei
ENSORLG00020004464	trnau1apb	99	65.889	ENSPNAG00000019138	trnau1apb	98	66.765	Pygocentrus_nattereri
ENSORLG00020004464	trnau1apb	99	60.345	ENSSFOG00015014158	trnau1apb	99	62.463	Scleropages_formosus
ENSORLG00020004464	trnau1apb	99	80.645	ENSSMAG00000001745	trnau1apb	99	79.883	Scophthalmus_maximus
ENSORLG00020004464	trnau1apb	99	85.630	ENSSDUG00000011109	trnau1apb	99	85.630	Seriola_dumerili
ENSORLG00020004464	trnau1apb	99	85.924	ENSSLDG00000012947	trnau1apb	99	85.924	Seriola_lalandi_dorsalis
ENSORLG00020004464	trnau1apb	74	38.224	ENSSPUG00000016701	-	82	36.187	Sphenodon_punctatus
ENSORLG00020004464	trnau1apb	100	86.810	ENSSPAG00000006917	trnau1apb	100	87.427	Stegastes_partitus
ENSORLG00020004464	trnau1apb	100	77.233	ENSTRUG00000008608	trnau1apb	100	78.198	Takifugu_rubripes
ENSORLG00020004464	trnau1apb	100	67.485	ENSTNIG00000000916	trnau1apb	100	67.552	Tetraodon_nigroviridis
ENSORLG00020004464	trnau1apb	99	67.492	ENSXCOG00000007974	trnau1apb	94	67.492	Xiphophorus_couchianus
ENSORLG00020004464	trnau1apb	100	81.556	ENSXMAG00000029918	trnau1apb	100	76.945	Xiphophorus_maculatus