EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020004648 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: -
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 17055 bases
Position: chr9:17502564-17519618
Accession: ZDB-GENE-081105-64
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020003808	ResIII	PF04851.15	9.1e-27	1	2
ENSORLP00020003808	ResIII	PF04851.15	9.1e-27	2	2
ENSORLP00020003808	DEAD	PF00270.29	4.7e-54	1	2
ENSORLP00020003808	DEAD	PF00270.29	4.7e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020009020	-	11167	-	ENSORLP00020003808	2134 (aa)	-	-
ENSORLT00020009064	-	1353	-	ENSORLP00020003785	450 (aa)	-	-

Gene Model

Click here to download ENSORLG00020004648's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020004648's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020004648	snrnp200	61	34.025	ENSORLG00020002951	hfm1	63	34.025
ENSORLG00020004648	snrnp200	80	45.424	ENSORLG00020022595	ascc3	91	45.424

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020004648	snrnp200	100	90.356	ENSG00000144028	SNRNP200	100	90.356	Homo_sapiens
ENSORLG00020004648	snrnp200	100	96.579	ENSAPOG00000010223	snrnp200	99	96.579	Acanthochromis_polyacanthus
ENSORLG00020004648	snrnp200	100	90.309	ENSAMEG00000008996	SNRNP200	100	90.309	Ailuropoda_melanoleuca
ENSORLG00020004648	snrnp200	97	96.517	ENSACIG00000001764	snrnp200	98	96.517	Amphilophus_citrinellus
ENSORLG00020004648	snrnp200	100	96.392	ENSAOCG00000024593	snrnp200	100	95.766	Amphiprion_ocellaris
ENSORLG00020004648	snrnp200	97	95.766	ENSAPEG00000012554	snrnp200	100	95.766	Amphiprion_percula
ENSORLG00020004648	snrnp200	100	96.392	ENSATEG00000022522	snrnp200	99	96.392	Anabas_testudineus
ENSORLG00020004648	snrnp200	99	90.382	ENSAPLG00000004313	SNRNP200	100	90.382	Anas_platyrhynchos
ENSORLG00020004648	snrnp200	99	89.406	ENSACAG00000000434	SNRNP200	100	89.406	Anolis_carolinensis
ENSORLG00020004648	snrnp200	100	86.969	ENSANAG00000036625	SNRNP200	100	86.782	Aotus_nancymaae
ENSORLG00020004648	snrnp200	99	96.051	ENSACLG00000011188	snrnp200	99	96.017	Astatotilapia_calliptera
ENSORLG00020004648	snrnp200	99	93.324	ENSAMXG00000005684	snrnp200	99	93.299	Astyanax_mexicanus
ENSORLG00020004648	snrnp200	100	89.981	ENSBTAG00000000848	SNRNP200	100	89.981	Bos_taurus
ENSORLG00020004648	snrnp200	100	90.356	ENSCJAG00000007514	SNRNP200	100	90.356	Callithrix_jacchus
ENSORLG00020004648	snrnp200	100	89.547	ENSCAFG00020019979	SNRNP200	100	91.482	Canis_lupus_dingo
ENSORLG00020004648	snrnp200	100	90.028	ENSCHIG00000020611	SNRNP200	100	90.028	Capra_hircus
ENSORLG00020004648	snrnp200	100	90.403	ENSTSYG00000010467	SNRNP200	100	90.403	Carlito_syrichta
ENSORLG00020004648	snrnp200	99	89.892	ENSCAPG00000017234	SNRNP200	99	89.892	Cavia_aperea
ENSORLG00020004648	snrnp200	100	90.215	ENSCPOG00000006776	SNRNP200	100	90.215	Cavia_porcellus
ENSORLG00020004648	snrnp200	100	90.356	ENSCCAG00000033962	SNRNP200	100	90.356	Cebus_capucinus
ENSORLG00020004648	snrnp200	100	90.356	ENSCATG00000015790	SNRNP200	100	90.356	Cercocebus_atys
ENSORLG00020004648	snrnp200	100	90.262	ENSCLAG00000004116	SNRNP200	100	90.262	Chinchilla_lanigera
ENSORLG00020004648	snrnp200	100	90.403	ENSCSAG00000017369	SNRNP200	100	90.403	Chlorocebus_sabaeus
ENSORLG00020004648	snrnp200	75	92.126	ENSCHOG00000012981	-	58	92.126	Choloepus_hoffmanni
ENSORLG00020004648	snrnp200	100	90.416	ENSCPBG00000022571	SNRNP200	99	93.617	Chrysemys_picta_bellii
ENSORLG00020004648	snrnp200	99	75.666	ENSCING00000005082	-	99	75.759	Ciona_intestinalis
ENSORLG00020004648	snrnp200	100	85.007	ENSCANG00000033932	SNRNP200	100	90.144	Colobus_angolensis_palliatus
ENSORLG00020004648	snrnp200	100	90.356	ENSCGRG00001022610	Snrnp200	100	90.356	Cricetulus_griseus_chok1gshd
ENSORLG00020004648	snrnp200	100	89.855	ENSCGRG00000016472	Snrnp200	100	89.855	Cricetulus_griseus_crigri
ENSORLG00020004648	snrnp200	100	94.892	ENSCSEG00000016399	snrnp200	100	94.892	Cynoglossus_semilaevis
ENSORLG00020004648	snrnp200	100	91.237	ENSCVAG00000017631	snrnp200	99	91.237	Cyprinodon_variegatus
ENSORLG00020004648	snrnp200	100	93.205	ENSDARG00000077536	snrnp200	99	93.205	Danio_rerio
ENSORLG00020004648	snrnp200	100	88.951	ENSDNOG00000011227	SNRNP200	100	88.951	Dasypus_novemcinctus
ENSORLG00020004648	snrnp200	100	87.991	ENSDORG00000005861	Snrnp200	100	87.991	Dipodomys_ordii
ENSORLG00020004648	snrnp200	100	73.253	FBgn0263599	l(3)72Ab	99	73.253	Drosophila_melanogaster
ENSORLG00020004648	snrnp200	95	89.578	ENSETEG00000000162	SNRNP200	74	89.578	Echinops_telfairi
ENSORLG00020004648	snrnp200	83	80.359	ENSEBUG00000016524	snrnp200	95	80.359	Eptatretus_burgeri
ENSORLG00020004648	snrnp200	100	89.277	ENSEASG00005001884	SNRNP200	100	89.231	Equus_asinus_asinus
ENSORLG00020004648	snrnp200	100	90.309	ENSECAG00000019675	SNRNP200	100	90.309	Equus_caballus
ENSORLG00020004648	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSORLG00020004648	snrnp200	99	94.972	ENSELUG00000018948	snrnp200	99	94.941	Esox_lucius
ENSORLG00020004648	snrnp200	100	90.356	ENSFCAG00000010699	SNRNP200	100	90.356	Felis_catus
ENSORLG00020004648	snrnp200	93	85.024	ENSFALG00000001368	-	94	85.024	Ficedula_albicollis
ENSORLG00020004648	snrnp200	100	90.169	ENSFDAG00000004683	SNRNP200	100	90.169	Fukomys_damarensis
ENSORLG00020004648	snrnp200	100	93.768	ENSFHEG00000003786	snrnp200	99	93.768	Fundulus_heteroclitus
ENSORLG00020004648	snrnp200	100	93.826	ENSGMOG00000004881	snrnp200	99	93.779	Gadus_morhua
ENSORLG00020004648	snrnp200	100	93.674	ENSGAFG00000010807	snrnp200	99	93.674	Gambusia_affinis
ENSORLG00020004648	snrnp200	100	95.652	ENSGACG00000011474	snrnp200	99	95.652	Gasterosteus_aculeatus
ENSORLG00020004648	snrnp200	95	90.591	ENSGAGG00000016069	SNRNP200	99	90.591	Gopherus_agassizii
ENSORLG00020004648	snrnp200	100	90.356	ENSGGOG00000005174	SNRNP200	100	90.356	Gorilla_gorilla
ENSORLG00020004648	snrnp200	97	93.483	ENSHBUG00000011322	snrnp200	99	93.533	Haplochromis_burtoni
ENSORLG00020004648	snrnp200	100	90.215	ENSHGLG00000006654	SNRNP200	100	90.215	Heterocephalus_glaber_female
ENSORLG00020004648	snrnp200	100	90.215	ENSHGLG00100018594	SNRNP200	100	90.215	Heterocephalus_glaber_male
ENSORLG00020004648	snrnp200	100	90.356	ENSSTOG00000016351	SNRNP200	100	90.356	Ictidomys_tridecemlineatus
ENSORLG00020004648	snrnp200	100	90.122	ENSJJAG00000023659	Snrnp200	100	90.122	Jaculus_jaculus
ENSORLG00020004648	snrnp200	100	93.508	ENSKMAG00000003665	snrnp200	99	93.508	Kryptolebias_marmoratus
ENSORLG00020004648	snrnp200	100	96.298	ENSLBEG00000021585	snrnp200	99	96.298	Labrus_bergylta
ENSORLG00020004648	snrnp200	82	91.681	ENSLACG00000000226	SNRNP200	100	91.213	Latimeria_chalumnae
ENSORLG00020004648	snrnp200	100	93.024	ENSLOCG00000015198	snrnp200	99	93.024	Lepisosteus_oculatus
ENSORLG00020004648	snrnp200	100	90.122	ENSLAFG00000015626	SNRNP200	100	90.122	Loxodonta_africana
ENSORLG00020004648	snrnp200	100	90.309	ENSMFAG00000040174	SNRNP200	99	91.570	Macaca_fascicularis
ENSORLG00020004648	snrnp200	100	90.309	ENSMMUG00000023261	SNRNP200	100	90.309	Macaca_mulatta
ENSORLG00020004648	snrnp200	100	90.262	ENSMNEG00000032398	SNRNP200	100	90.262	Macaca_nemestrina
ENSORLG00020004648	snrnp200	100	90.356	ENSMLEG00000019083	SNRNP200	99	91.570	Mandrillus_leucophaeus
ENSORLG00020004648	snrnp200	100	95.691	ENSMAMG00000007851	snrnp200	99	95.691	Mastacembelus_armatus
ENSORLG00020004648	snrnp200	97	93.483	ENSMZEG00005010787	snrnp200	99	93.533	Maylandia_zebra
ENSORLG00020004648	snrnp200	97	90.082	ENSMGAG00000001831	SNRNP200	99	90.097	Meleagris_gallopavo
ENSORLG00020004648	snrnp200	100	90.403	ENSMAUG00000011825	Snrnp200	100	90.403	Mesocricetus_auratus
ENSORLG00020004648	snrnp200	100	90.403	ENSMICG00000004710	SNRNP200	100	90.403	Microcebus_murinus
ENSORLG00020004648	snrnp200	100	88.624	ENSMOCG00000011814	Snrnp200	100	88.624	Microtus_ochrogaster
ENSORLG00020004648	snrnp200	99	93.982	ENSMMOG00000014167	snrnp200	99	93.955	Mola_mola
ENSORLG00020004648	snrnp200	100	90.262	ENSMODG00000008475	SNRNP200	100	90.262	Monodelphis_domestica
ENSORLG00020004648	snrnp200	99	96.145	ENSMALG00000001973	snrnp200	99	96.111	Monopterus_albus
ENSORLG00020004648	snrnp200	100	90.262	MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.262	Mus_caroli
ENSORLG00020004648	snrnp200	100	90.309	ENSMUSG00000003660	Snrnp200	100	90.309	Mus_musculus
ENSORLG00020004648	snrnp200	100	90.309	MGP_PahariEiJ_G0025695	Snrnp200	100	90.309	Mus_pahari
ENSORLG00020004648	snrnp200	100	90.309	MGP_SPRETEiJ_G0025170	Snrnp200	100	92.541	Mus_spretus
ENSORLG00020004648	snrnp200	100	90.356	ENSMPUG00000008949	SNRNP200	100	90.356	Mustela_putorius_furo
ENSORLG00020004648	snrnp200	100	89.949	ENSMLUG00000010493	SNRNP200	100	89.949	Myotis_lucifugus
ENSORLG00020004648	snrnp200	100	87.172	ENSMLUG00000027511	-	100	87.172	Myotis_lucifugus
ENSORLG00020004648	snrnp200	100	90.356	ENSNGAG00000021993	Snrnp200	100	90.356	Nannospalax_galili
ENSORLG00020004648	snrnp200	90	96.221	ENSNBRG00000017960	snrnp200	98	96.221	Neolamprologus_brichardi
ENSORLG00020004648	snrnp200	100	86.239	ENSNLEG00000000025	SNRNP200	100	86.239	Nomascus_leucogenys
ENSORLG00020004648	snrnp200	100	94.845	ENSMEUG00000010532	SNRNP200	79	92.381	Notamacropus_eugenii
ENSORLG00020004648	snrnp200	96	89.251	ENSOPRG00000015464	SNRNP200	100	87.079	Ochotona_princeps
ENSORLG00020004648	snrnp200	100	90.215	ENSODEG00000008366	SNRNP200	100	90.215	Octodon_degus
ENSORLG00020004648	snrnp200	99	95.957	ENSONIG00000010714	snrnp200	99	95.923	Oreochromis_niloticus
ENSORLG00020004648	snrnp200	100	90.403	ENSOCUG00000009864	SNRNP200	100	90.403	Oryctolagus_cuniculus
ENSORLG00020004648	snrnp200	100	99.766	ENSORLG00000012286	snrnp200	100	99.766	Oryzias_latipes
ENSORLG00020004648	snrnp200	100	99.906	ENSORLG00015019114	snrnp200	100	99.906	Oryzias_latipes_hsok
ENSORLG00020004648	snrnp200	100	99.391	ENSOMEG00000011834	snrnp200	99	99.391	Oryzias_melastigma
ENSORLG00020004648	snrnp200	100	90.403	ENSOGAG00000006879	SNRNP200	100	90.403	Otolemur_garnettii
ENSORLG00020004648	snrnp200	100	89.331	ENSOARG00000013949	SNRNP200	100	89.331	Ovis_aries
ENSORLG00020004648	snrnp200	100	90.356	ENSPPAG00000041559	SNRNP200	100	90.356	Pan_paniscus
ENSORLG00020004648	snrnp200	100	90.356	ENSPPRG00000004435	SNRNP200	100	90.356	Panthera_pardus
ENSORLG00020004648	snrnp200	100	89.934	ENSPTIG00000006380	SNRNP200	100	89.934	Panthera_tigris_altaica
ENSORLG00020004648	snrnp200	100	90.356	ENSPTRG00000012230	SNRNP200	100	90.356	Pan_troglodytes
ENSORLG00020004648	snrnp200	100	90.309	ENSPANG00000006017	SNRNP200	100	90.309	Papio_anubis
ENSORLG00020004648	snrnp200	100	93.724	ENSPKIG00000014762	snrnp200	99	93.724	Paramormyrops_kingsleyae
ENSORLG00020004648	snrnp200	100	89.518	ENSPSIG00000008580	SNRNP200	100	89.518	Pelodiscus_sinensis
ENSORLG00020004648	snrnp200	100	90.169	ENSPCIG00000023050	SNRNP200	100	90.169	Phascolarctos_cinereus
ENSORLG00020004648	snrnp200	100	96.393	ENSPFOG00000015110	snrnp200	99	96.393	Poecilia_formosa
ENSORLG00020004648	snrnp200	97	96.700	ENSPLAG00000006711	snrnp200	99	96.700	Poecilia_latipinna
ENSORLG00020004648	snrnp200	97	96.425	ENSPMEG00000021166	snrnp200	99	96.425	Poecilia_mexicana
ENSORLG00020004648	snrnp200	100	96.298	ENSPREG00000008875	snrnp200	99	96.298	Poecilia_reticulata
ENSORLG00020004648	snrnp200	100	90.356	ENSPPYG00000012068	SNRNP200	100	90.356	Pongo_abelii
ENSORLG00020004648	snrnp200	97	93.590	ENSPCAG00000008536	SNRNP200	86	95.745	Procavia_capensis
ENSORLG00020004648	snrnp200	100	90.356	ENSPCOG00000024608	SNRNP200	100	90.356	Propithecus_coquereli
ENSORLG00020004648	snrnp200	96	90.890	ENSPVAG00000005860	SNRNP200	93	90.890	Pteropus_vampyrus
ENSORLG00020004648	snrnp200	99	91.280	ENSPNYG00000017476	snrnp200	99	91.262	Pundamilia_nyererei
ENSORLG00020004648	snrnp200	100	89.368	ENSPNAG00000010998	snrnp200	99	89.368	Pygocentrus_nattereri
ENSORLG00020004648	snrnp200	100	90.403	ENSRNOG00000012157	Snrnp200	100	90.403	Rattus_norvegicus
ENSORLG00020004648	snrnp200	100	90.356	ENSRBIG00000044690	-	100	90.356	Rhinopithecus_bieti
ENSORLG00020004648	snrnp200	100	90.356	ENSRROG00000037952	-	100	90.356	Rhinopithecus_roxellana
ENSORLG00020004648	snrnp200	100	90.356	ENSSBOG00000035471	SNRNP200	100	90.356	Saimiri_boliviensis_boliviensis
ENSORLG00020004648	snrnp200	97	90.082	ENSSHAG00000000758	SNRNP200	99	90.097	Sarcophilus_harrisii
ENSORLG00020004648	snrnp200	99	93.750	ENSSFOG00015018826	snrnp200	99	93.724	Scleropages_formosus
ENSORLG00020004648	snrnp200	100	96.485	ENSSMAG00000005463	snrnp200	99	96.624	Scophthalmus_maximus
ENSORLG00020004648	snrnp200	100	96.626	ENSSDUG00000021410	snrnp200	99	96.626	Seriola_dumerili
ENSORLG00020004648	snrnp200	100	96.439	ENSSLDG00000010884	snrnp200	99	96.439	Seriola_lalandi_dorsalis
ENSORLG00020004648	snrnp200	95	87.668	ENSSARG00000010728	SNRNP200	96	87.668	Sorex_araneus
ENSORLG00020004648	snrnp200	100	90.637	ENSSPUG00000003726	-	100	90.637	Sphenodon_punctatus
ENSORLG00020004648	snrnp200	100	96.720	ENSSPAG00000001842	snrnp200	99	96.720	Stegastes_partitus
ENSORLG00020004648	snrnp200	100	90.403	ENSSSCG00000008127	SNRNP200	100	90.403	Sus_scrofa
ENSORLG00020004648	snrnp200	99	82.147	ENSTGUG00000014475	-	100	82.147	Taeniopygia_guttata
ENSORLG00020004648	snrnp200	99	95.440	ENSTRUG00000001307	snrnp200	99	95.408	Takifugu_rubripes
ENSORLG00020004648	snrnp200	100	90.342	ENSTNIG00000004320	snrnp200	100	83.497	Tetraodon_nigroviridis
ENSORLG00020004648	snrnp200	82	93.897	ENSTBEG00000003329	-	67	93.897	Tupaia_belangeri
ENSORLG00020004648	snrnp200	100	90.122	ENSTTRG00000004983	SNRNP200	100	90.122	Tursiops_truncatus
ENSORLG00020004648	snrnp200	75	82.752	ENSUAMG00000008395	-	95	82.752	Ursus_americanus
ENSORLG00020004648	snrnp200	100	90.356	ENSUMAG00000012385	SNRNP200	100	90.356	Ursus_maritimus
ENSORLG00020004648	snrnp200	87	93.966	ENSVPAG00000006434	SNRNP200	66	93.966	Vicugna_pacos
ENSORLG00020004648	snrnp200	100	90.145	ENSVVUG00000026247	SNRNP200	100	90.145	Vulpes_vulpes
ENSORLG00020004648	snrnp200	100	89.991	ENSXETG00000001243	snrnp200	100	89.991	Xenopus_tropicalis
ENSORLG00020004648	snrnp200	97	96.570	ENSXMAG00000002058	snrnp200	98	96.570	Xiphophorus_maculatus