EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00020004681 (Gene tree)
Gene ID
-
Gene Symbol
pabpn1
Alias
-
Full Name
poly(A) binding protein%2C nuclear 1
Gene Type
protein_coding
Species
Oryzias_latipes_hni
Status
putative
Strand
Minus strand
Length
15686 bases
Position
chr20:10826716-10842401
Accession
ZDB-GENE-040426-2401
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00020003883RRM_1PF00076.224e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00020008899-5539-ENSORLP00020003883292 (aa)--
Gene Model
Click here to download ENSORLG00020004681's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020004681's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00020004681pabpn17453.778ENSORLG00020015068PABPN1L7949.778
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00020004681pabpn16782.266ENSG00000100836PABPN18784.932Homo_sapiens
ENSORLG00020004681pabpn16383.957ENSG00000258643BCL2L2-PABPN15086.905Homo_sapiens
ENSORLG00020004681pabpn110095.205ENSAPOG00000016425pabpn19997.817Acanthochromis_polyacanthus
ENSORLG00020004681pabpn16383.957ENSAMEG00000007048BCL2L2-PABPN18986.905Ailuropoda_melanoleuca
ENSORLG00020004681pabpn110093.878ENSACIG00000021744pabpn19898.844Amphilophus_citrinellus
ENSORLG00020004681pabpn17897.817ENSAOCG00000015805pabpn19997.817Amphiprion_ocellaris
ENSORLG00020004681pabpn17897.817ENSAPEG00000009623pabpn19997.817Amphiprion_percula
ENSORLG00020004681pabpn17898.253ENSATEG00000020531pabpn19998.253Anabas_testudineus
ENSORLG00020004681pabpn16385.027ENSACAG00000006185-7379.710Anolis_carolinensis
ENSORLG00020004681pabpn16683.590ENSANAG00000024513-7776.959Aotus_nancymaae
ENSORLG00020004681pabpn110093.559ENSACLG00000016374pabpn110093.559Astatotilapia_calliptera
ENSORLG00020004681pabpn110084.642ENSAMXG00000000452pabpn19997.391Astyanax_mexicanus
ENSORLG00020004681pabpn16482.540ENSBTAG00000053753-6385.294Bos_taurus
ENSORLG00020004681pabpn16683.590ENSBTAG00000006884PABPN16383.957Bos_taurus
ENSORLG00020004681pabpn15985.057ENSBTAG00000050594-7483.333Bos_taurus
ENSORLG00020004681pabpn15580.000ENSCJAG00000004407-7382.877Callithrix_jacchus
ENSORLG00020004681pabpn17875.652ENSCJAG00000007960-7677.725Callithrix_jacchus
ENSORLG00020004681pabpn16782.266ENSCAFG00000011482PABPN17971.369Canis_familiaris
ENSORLG00020004681pabpn16782.266ENSCAFG00020007298-6184.492Canis_lupus_dingo
ENSORLG00020004681pabpn16782.266ENSCAFG00020006651-6184.492Canis_lupus_dingo
ENSORLG00020004681pabpn16782.266ENSCHIG00000012184PABPN16184.492Capra_hircus
ENSORLG00020004681pabpn16383.957ENSTSYG00000033996BCL2L2-PABPN18284.932Carlito_syrichta
ENSORLG00020004681pabpn16782.266ENSCPOG00000025574PABPN16782.039Cavia_porcellus
ENSORLG00020004681pabpn17875.652ENSCCAG00000033954BCL2L2-PABPN17677.725Cebus_capucinus
ENSORLG00020004681pabpn17875.652ENSCATG00000038536BCL2L2-PABPN17677.725Cercocebus_atys
ENSORLG00020004681pabpn15181.208ENSCLAG00000012423PABPN16859.091Chinchilla_lanigera
ENSORLG00020004681pabpn16780.788ENSCSAG00000016036PABPN16182.888Chlorocebus_sabaeus
ENSORLG00020004681pabpn17072.464ENSCHOG00000004798BCL2L2-PABPN17973.936Choloepus_hoffmanni
ENSORLG00020004681pabpn15583.636ENSCPBG00000026060-8286.986Chrysemys_picta_bellii
ENSORLG00020004681pabpn17063.942ENSCING00000012468-8066.480Ciona_intestinalis
ENSORLG00020004681pabpn15964.773ENSCSAVG00000002001-8068.889Ciona_savignyi
ENSORLG00020004681pabpn16383.957ENSCANG00000009750BCL2L2-PABPN18284.932Colobus_angolensis_palliatus
ENSORLG00020004681pabpn16671.503ENSCANG00000030980-7964.815Colobus_angolensis_palliatus
ENSORLG00020004681pabpn16781.773ENSCGRG00001019696Pabpn18284.247Cricetulus_griseus_chok1gshd
ENSORLG00020004681pabpn15091.156ENSCGRG00000011102Pabpn19191.156Cricetulus_griseus_crigri
ENSORLG00020004681pabpn18396.694ENSCSEG00000008774pabpn19996.507Cynoglossus_semilaevis
ENSORLG00020004681pabpn110093.878ENSCVAG00000003152pabpn110094.898Cyprinodon_variegatus
ENSORLG00020004681pabpn16354.645ENSDARG00000087996pabpn1l7267.521Danio_rerio
ENSORLG00020004681pabpn110092.808ENSDARG00000045373pabpn110096.818Danio_rerio
ENSORLG00020004681pabpn16782.266ENSDNOG00000023682PABPN16184.492Dasypus_novemcinctus
ENSORLG00020004681pabpn16781.773ENSDORG00000028966-6183.957Dipodomys_ordii
ENSORLG00020004681pabpn17658.333FBgn0005648Pabp29260.287Drosophila_melanogaster
ENSORLG00020004681pabpn17872.489ENSEBUG00000002322pabpn19772.489Eptatretus_burgeri
ENSORLG00020004681pabpn16782.759ENSEASG00005011716PABPN16782.524Equus_asinus_asinus
ENSORLG00020004681pabpn16782.673ENSECAG00000011652PABPN16384.492Equus_caballus
ENSORLG00020004681pabpn16780.296ENSEEUG00000012973-6482.353Erinaceus_europaeus
ENSORLG00020004681pabpn17894.017ENSELUG00000022654pabpn19994.017Esox_lucius
ENSORLG00020004681pabpn16782.266ENSFCAG00000031922PABPN16184.492Felis_catus
ENSORLG00020004681pabpn15581.818ENSFDAG00000018381BCL2L2-PABPN19281.818Fukomys_damarensis
ENSORLG00020004681pabpn17895.633ENSFHEG00000007215pabpn19995.633Fundulus_heteroclitus
ENSORLG00020004681pabpn110089.078ENSGMOG00000003922pabpn110091.468Gadus_morhua
ENSORLG00020004681pabpn15983.708ENSGALG00000052930-6082.212Gallus_gallus
ENSORLG00020004681pabpn17897.835ENSGAFG00000017099pabpn19997.835Gambusia_affinis
ENSORLG00020004681pabpn110093.836ENSGACG00000002167pabpn110093.836Gasterosteus_aculeatus
ENSORLG00020004681pabpn17875.652ENSGGOG00000022683-7677.725Gorilla_gorilla
ENSORLG00020004681pabpn16870.732ENSGGOG00000025919-8372.222Gorilla_gorilla
ENSORLG00020004681pabpn17069.268ENSGGOG00000039675-8366.514Gorilla_gorilla
ENSORLG00020004681pabpn17898.253ENSHBUG00000019523pabpn19998.253Haplochromis_burtoni
ENSORLG00020004681pabpn16869.268ENSHGLG00000018588-7074.468Heterocephalus_glaber_female
ENSORLG00020004681pabpn16781.773ENSHGLG00000002927-9291.156Heterocephalus_glaber_female
ENSORLG00020004681pabpn15562.195ENSHGLG00000009842-7371.875Heterocephalus_glaber_female
ENSORLG00020004681pabpn16084.270ENSHGLG00100006673-9291.156Heterocephalus_glaber_male
ENSORLG00020004681pabpn16869.268ENSHGLG00100015565-7174.468Heterocephalus_glaber_male
ENSORLG00020004681pabpn15568.902ENSHGLG00100018935-8277.027Heterocephalus_glaber_male
ENSORLG00020004681pabpn17897.380ENSHCOG00000004655pabpn19997.380Hippocampus_comes
ENSORLG00020004681pabpn17888.210ENSIPUG00000000180-9888.210Ictalurus_punctatus
ENSORLG00020004681pabpn110085.616ENSIPUG00000008085PABPN19996.070Ictalurus_punctatus
ENSORLG00020004681pabpn15581.818ENSSTOG00000029847BCL2L2-PABPN18284.932Ictidomys_tridecemlineatus
ENSORLG00020004681pabpn15581.818ENSJJAG00000023507Gm205218284.932Jaculus_jaculus
ENSORLG00020004681pabpn110095.222ENSKMAG00000018748pabpn19997.826Kryptolebias_marmoratus
ENSORLG00020004681pabpn110095.205ENSLBEG00000027266pabpn19998.253Labrus_bergylta
ENSORLG00020004681pabpn16088.202ENSLACG00000000646pabpn19177.725Latimeria_chalumnae
ENSORLG00020004681pabpn16467.539ENSLOCG00000004694pabpn1l8867.539Lepisosteus_oculatus
ENSORLG00020004681pabpn110088.737ENSLOCG00000000796pabpn110089.078Lepisosteus_oculatus
ENSORLG00020004681pabpn15082.432ENSLAFG00000031227-8586.719Loxodonta_africana
ENSORLG00020004681pabpn16383.957ENSMFAG00000032183BCL2L2-PABPN18284.932Macaca_fascicularis
ENSORLG00020004681pabpn16767.822ENSMMUG00000048382-6268.984Macaca_mulatta
ENSORLG00020004681pabpn16383.957ENSMMUG00000014747BCL2L2-PABPN18586.290Macaca_mulatta
ENSORLG00020004681pabpn17875.652ENSMNEG00000045065BCL2L2-PABPN17677.725Macaca_nemestrina
ENSORLG00020004681pabpn16268.852ENSMNEG00000035750-8378.151Macaca_nemestrina
ENSORLG00020004681pabpn16383.957ENSMLEG00000043862BCL2L2-PABPN18284.932Mandrillus_leucophaeus
ENSORLG00020004681pabpn15665.854ENSMLEG00000034623-8376.471Mandrillus_leucophaeus
ENSORLG00020004681pabpn110096.575ENSMAMG00000007979pabpn110096.575Mastacembelus_armatus
ENSORLG00020004681pabpn110095.205ENSMZEG00005011904pabpn110095.205Maylandia_zebra
ENSORLG00020004681pabpn16781.773ENSMAUG00000007383Gm205216383.957Mesocricetus_auratus
ENSORLG00020004681pabpn17876.087ENSMICG00000010002BCL2L2-PABPN17677.725Microcebus_murinus
ENSORLG00020004681pabpn16781.281ENSMOCG00000018557Gm205219091.156Microtus_ochrogaster
ENSORLG00020004681pabpn110095.548ENSMMOG00000005405pabpn19998.690Mola_mola
ENSORLG00020004681pabpn16780.198ENSMODG00000004535-6782.039Monodelphis_domestica
ENSORLG00020004681pabpn110097.260ENSMALG00000019612pabpn110097.260Monopterus_albus
ENSORLG00020004681pabpn16780.788MGP_CAROLIEiJ_G0019277Pabpn19090.476Mus_caroli
ENSORLG00020004681pabpn16382.353MGP_CAROLIEiJ_G0019276Gm205215085.119Mus_caroli
ENSORLG00020004681pabpn16382.888ENSMUSG00000092232Gm205215085.714Mus_musculus
ENSORLG00020004681pabpn16781.281ENSMUSG00000022194Pabpn19090.476Mus_musculus
ENSORLG00020004681pabpn16781.281MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSORLG00020004681pabpn16382.888MGP_PahariEiJ_G0030294Gm205215085.714Mus_pahari
ENSORLG00020004681pabpn16781.281MGP_SPRETEiJ_G0020166Pabpn19090.476Mus_spretus
ENSORLG00020004681pabpn16382.888MGP_SPRETEiJ_G0020165Gm205215085.714Mus_spretus
ENSORLG00020004681pabpn15282.692ENSMPUG00000006775-8784.932Mustela_putorius_furo
ENSORLG00020004681pabpn16382.888ENSMLUG00000003800-8985.714Myotis_lucifugus
ENSORLG00020004681pabpn16681.026ENSMLUG00000028677-7773.832Myotis_lucifugus
ENSORLG00020004681pabpn16280.749ENSMLUG00000012452-6879.227Myotis_lucifugus
ENSORLG00020004681pabpn16383.957ENSNGAG00000019529Gm205215086.905Nannospalax_galili
ENSORLG00020004681pabpn110095.548ENSNBRG00000023955pabpn19898.844Neolamprologus_brichardi
ENSORLG00020004681pabpn16867.980ENSNLEG00000030598-7770.526Nomascus_leucogenys
ENSORLG00020004681pabpn15059.310ENSNLEG00000035292-8763.200Nomascus_leucogenys
ENSORLG00020004681pabpn16782.266ENSNLEG00000015007-6784.492Nomascus_leucogenys
ENSORLG00020004681pabpn16781.773ENSODEG00000002083BCL2L2-PABPN16183.957Octodon_degus
ENSORLG00020004681pabpn15972.159ENSODEG00000011555-7873.973Octodon_degus
ENSORLG00020004681pabpn16773.500ENSODEG00000003739-6676.216Octodon_degus
ENSORLG00020004681pabpn110095.548ENSONIG00000008112pabpn110095.548Oreochromis_niloticus
ENSORLG00020004681pabpn16781.773ENSOCUG00000016174PABPN16883.957Oryctolagus_cuniculus
ENSORLG00020004681pabpn1100100.000ENSORLG00000027900pabpn1100100.000Oryzias_latipes
ENSORLG00020004681pabpn1100100.000ENSORLG00015000018pabpn1100100.000Oryzias_latipes_hsok
ENSORLG00020004681pabpn110096.575ENSOMEG00000016618pabpn110096.575Oryzias_melastigma
ENSORLG00020004681pabpn16782.266ENSOGAG00000008710PABPN16184.492Otolemur_garnettii
ENSORLG00020004681pabpn16383.957ENSPPAG00000028984BCL2L2-PABPN18784.932Pan_paniscus
ENSORLG00020004681pabpn15566.871ENSPPAG00000039421-8069.444Pan_paniscus
ENSORLG00020004681pabpn16782.266ENSPPRG00000010567PABPN16184.492Panthera_pardus
ENSORLG00020004681pabpn15581.818ENSPTIG00000001063BCL2L2-PABPN18284.932Panthera_tigris_altaica
ENSORLG00020004681pabpn17875.652ENSPTRG00000006167BCL2L27677.725Pan_troglodytes
ENSORLG00020004681pabpn17862.771ENSPTRG00000047273-8460.870Pan_troglodytes
ENSORLG00020004681pabpn17875.652ENSPANG00000021100BCL2L2-PABPN17677.725Papio_anubis
ENSORLG00020004681pabpn16669.231ENSPANG00000023326-8378.992Papio_anubis
ENSORLG00020004681pabpn110094.863ENSPKIG00000008144-10094.863Paramormyrops_kingsleyae
ENSORLG00020004681pabpn15669.512ENSPKIG00000008340pabpn1l8468.023Paramormyrops_kingsleyae
ENSORLG00020004681pabpn110086.735ENSPKIG00000018052pabpn19994.783Paramormyrops_kingsleyae
ENSORLG00020004681pabpn110090.068ENSPMGG00000022027pabpn110090.068Periophthalmus_magnuspinnatus
ENSORLG00020004681pabpn16781.773ENSPEMG00000008332Gm205218991.156Peromyscus_maniculatus_bairdii
ENSORLG00020004681pabpn16375.269ENSPMAG00000006212pabpn18771.628Petromyzon_marinus
ENSORLG00020004681pabpn16779.703ENSPCIG00000027751-6183.957Phascolarctos_cinereus
ENSORLG00020004681pabpn110096.599ENSPFOG00000010351pabpn110096.599Poecilia_formosa
ENSORLG00020004681pabpn110097.279ENSPLAG00000022696pabpn110097.279Poecilia_latipinna
ENSORLG00020004681pabpn17896.537ENSPMEG00000020856pabpn19996.537Poecilia_mexicana
ENSORLG00020004681pabpn110094.218ENSPREG00000011278pabpn19996.970Poecilia_reticulata
ENSORLG00020004681pabpn16482.990ENSPPYG00000005663PABPN16784.492Pongo_abelii
ENSORLG00020004681pabpn16369.792ENSPCAG00000005902PABPN16469.841Procavia_capensis
ENSORLG00020004681pabpn17876.087ENSPCOG00000028047BCL2L2-PABPN17677.725Propithecus_coquereli
ENSORLG00020004681pabpn16880.583ENSPVAG00000005270PABPN16183.422Pteropus_vampyrus
ENSORLG00020004681pabpn17898.253ENSPNYG00000013182pabpn19998.253Pundamilia_nyererei
ENSORLG00020004681pabpn15469.620ENSPNAG00000021666pabpn1l8469.591Pygocentrus_nattereri
ENSORLG00020004681pabpn110092.808ENSPNAG00000023526pabpn19997.380Pygocentrus_nattereri
ENSORLG00020004681pabpn16781.773ENSRNOG00000042195Pabpn16283.957Rattus_norvegicus
ENSORLG00020004681pabpn16970.531ENSRBIG00000042811-8771.220Rhinopithecus_bieti
ENSORLG00020004681pabpn17072.115ENSRBIG00000039547-6871.658Rhinopithecus_bieti
ENSORLG00020004681pabpn16084.831ENSRBIG00000040762BCL2L2-PABPN15286.905Rhinopithecus_bieti
ENSORLG00020004681pabpn16084.831ENSRROG00000045535BCL2L2-PABPN18284.932Rhinopithecus_roxellana
ENSORLG00020004681pabpn16867.308ENSRROG00000036409-6365.854Rhinopithecus_roxellana
ENSORLG00020004681pabpn16872.059ENSRROG00000040409-6872.432Rhinopithecus_roxellana
ENSORLG00020004681pabpn16378.500ENSSBOG00000026930BCL2L2-PABPN18784.932Saimiri_boliviensis_boliviensis
ENSORLG00020004681pabpn16381.183ENSSHAG00000014841-7786.310Sarcophilus_harrisii
ENSORLG00020004681pabpn17858.723ENSSHAG00000007707-9856.170Sarcophilus_harrisii
ENSORLG00020004681pabpn110086.348ENSSFOG00015012565pabpn19989.130Scleropages_formosus
ENSORLG00020004681pabpn17895.197ENSSFOG00015014718pabpn19995.197Scleropages_formosus
ENSORLG00020004681pabpn110094.863ENSSMAG00000020157pabpn19997.817Scophthalmus_maximus
ENSORLG00020004681pabpn110098.630ENSSDUG00000020582pabpn110098.630Seriola_dumerili
ENSORLG00020004681pabpn17898.253ENSSLDG00000007118pabpn19998.253Seriola_lalandi_dorsalis
ENSORLG00020004681pabpn110094.881ENSSPAG00000021658pabpn19997.391Stegastes_partitus
ENSORLG00020004681pabpn16782.759ENSSSCG00000002023PABPN16782.524Sus_scrofa
ENSORLG00020004681pabpn17062.679ENSSSCG00000034805-7562.434Sus_scrofa
ENSORLG00020004681pabpn110093.836ENSTRUG00000023664pabpn19996.507Takifugu_rubripes
ENSORLG00020004681pabpn17294.313ENSTNIG00000005369pabpn19097.423Tetraodon_nigroviridis
ENSORLG00020004681pabpn16782.266ENSUAMG00000024460PABPN16184.492Ursus_americanus
ENSORLG00020004681pabpn16384.492ENSUMAG00000014288BCL2L2-PABPN15186.905Ursus_maritimus
ENSORLG00020004681pabpn16383.957ENSVVUG00000019912BCL2L2-PABPN16885.465Vulpes_vulpes
ENSORLG00020004681pabpn16585.492ENSXETG00000014597pabpn16684.103Xenopus_tropicalis
ENSORLG00020004681pabpn15884.884ENSXCOG00000005158pabpn19684.884Xiphophorus_couchianus
ENSORLG00020004681pabpn110097.279ENSXMAG00000006196pabpn110097.279Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us