EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020004812 (Gene tree)
Gene ID: -
Gene Symbol: blm
Alias: -
Full Name: Oryzias latipes BLM RecQ like helicase (blm)%2C mRNA.
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 9761 bases
Position: chr6:15481733-15491493
Accession: NM_001104650
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020003904	HRDC	PF00570.23	2.1e-14	1	1
ENSORLP00020023726	HRDC	PF00570.23	2.1e-14	1	1
ENSORLP00020023710	HRDC	PF00570.23	2.2e-14	1	1
ENSORLP00020023726	BDHCT	PF08072.11	2e-19	1	1
ENSORLP00020003904	BDHCT	PF08072.11	2e-19	1	1
ENSORLP00020023710	BDHCT	PF08072.11	2e-19	1	1
ENSORLP00020023726	DEAD	PF00270.29	3.2e-17	1	1
ENSORLP00020023710	DEAD	PF00270.29	3.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020008776	-	4510	XM_023955368	ENSORLP00020023726	1363 (aa)	XP_023811136	-
ENSORLT00020008823	-	4542	-	ENSORLP00020023710	1393 (aa)	-	-
ENSORLT00020008862	-	4074	-	ENSORLP00020003904	1357 (aa)	-	-

Gene Model

Click here to download ENSORLG00020004812's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020004812's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020004812	blm	57	66.539	ENSG00000197299	BLM	83	74.180	Homo_sapiens
ENSORLG00020004812	blm	100	72.472	ENSAPOG00000017966	blm	100	73.315	Acanthochromis_polyacanthus
ENSORLG00020004812	blm	84	65.301	ENSAMEG00000013843	BLM	84	65.301	Ailuropoda_melanoleuca
ENSORLG00020004812	blm	100	72.914	ENSACIG00000023762	blm	100	72.772	Amphilophus_citrinellus
ENSORLG00020004812	blm	100	72.302	ENSAOCG00000003318	blm	100	73.295	Amphiprion_ocellaris
ENSORLG00020004812	blm	100	72.042	ENSAPEG00000018105	blm	100	73.015	Amphiprion_percula
ENSORLG00020004812	blm	99	73.085	ENSATEG00000006421	blm	100	73.136	Anabas_testudineus
ENSORLG00020004812	blm	81	52.936	ENSAPLG00000006878	BLM	97	52.946	Anas_platyrhynchos
ENSORLG00020004812	blm	61	66.667	ENSACAG00000014275	BLM	67	66.368	Anolis_carolinensis
ENSORLG00020004812	blm	57	66.880	ENSANAG00000038415	BLM	69	73.566	Aotus_nancymaae
ENSORLG00020004812	blm	100	72.843	ENSACLG00000020354	blm	100	72.965	Astatotilapia_calliptera
ENSORLG00020004812	blm	99	57.282	ENSAMXG00000016970	blm	99	58.950	Astyanax_mexicanus
ENSORLG00020004812	blm	80	72.897	ENSBTAG00000020301	BLM	86	72.897	Bos_taurus
ENSORLG00020004812	blm	57	67.391	ENSCJAG00000009803	BLM	60	73.770	Callithrix_jacchus
ENSORLG00020004812	blm	67	64.654	ENSCAFG00000012385	BLM	66	65.645	Canis_familiaris
ENSORLG00020004812	blm	67	64.654	ENSCAFG00020016111	BLM	87	68.006	Canis_lupus_dingo
ENSORLG00020004812	blm	80	72.897	ENSCHIG00000010329	BLM	86	72.897	Capra_hircus
ENSORLG00020004812	blm	57	65.649	ENSTSYG00000012368	BLM	51	72.541	Carlito_syrichta
ENSORLG00020004812	blm	76	63.652	ENSCAPG00000017976	BLM	70	69.913	Cavia_aperea
ENSORLG00020004812	blm	99	46.494	ENSCPOG00000001761	BLM	99	46.353	Cavia_porcellus
ENSORLG00020004812	blm	57	66.496	ENSCCAG00000023069	BLM	60	73.975	Cebus_capucinus
ENSORLG00020004812	blm	85	66.285	ENSCATG00000040609	BLM	83	73.770	Cercocebus_atys
ENSORLG00020004812	blm	87	62.087	ENSCLAG00000012111	BLM	87	62.069	Chinchilla_lanigera
ENSORLG00020004812	blm	64	66.156	ENSCSAG00000017040	BLM	84	66.496	Chlorocebus_sabaeus
ENSORLG00020004812	blm	72	78.261	ENSCHOG00000006255	BLM	50	59.722	Choloepus_hoffmanni
ENSORLG00020004812	blm	76	56.209	ENSCPBG00000025000	BLM	94	55.471	Chrysemys_picta_bellii
ENSORLG00020004812	blm	53	51.911	ENSCANG00000034808	BLM	81	52.866	Colobus_angolensis_palliatus
ENSORLG00020004812	blm	63	63.886	ENSCGRG00001024897	Blm	88	64.311	Cricetulus_griseus_chok1gshd
ENSORLG00020004812	blm	95	65.437	ENSCSEG00000013483	blm	99	64.586	Cynoglossus_semilaevis
ENSORLG00020004812	blm	76	76.724	ENSCVAG00000017583	blm	99	70.428	Cyprinodon_variegatus
ENSORLG00020004812	blm	99	58.424	ENSDARG00000077089	blm	100	58.143	Danio_rerio
ENSORLG00020004812	blm	85	64.796	ENSDNOG00000010159	BLM	84	65.184	Dasypus_novemcinctus
ENSORLG00020004812	blm	60	63.432	ENSDORG00000011033	Blm	99	55.441	Dipodomys_ordii
ENSORLG00020004812	blm	57	39.576	FBgn0002906	Blm	54	39.493	Drosophila_melanogaster
ENSORLG00020004812	blm	57	55.814	ENSETEG00000015019	BLM	56	55.814	Echinops_telfairi
ENSORLG00020004812	blm	71	59.952	ENSEASG00005006727	BLM	72	60.613	Equus_asinus_asinus
ENSORLG00020004812	blm	68	63.409	ENSECAG00000011405	BLM	67	63.302	Equus_caballus
ENSORLG00020004812	blm	78	64.413	ENSEEUG00000001434	BLM	66	64.413	Erinaceus_europaeus
ENSORLG00020004812	blm	99	58.697	ENSELUG00000019098	blm	99	58.451	Esox_lucius
ENSORLG00020004812	blm	64	65.985	ENSFCAG00000006087	BLM	60	73.361	Felis_catus
ENSORLG00020004812	blm	76	54.784	ENSFALG00000010981	BLM	67	63.070	Ficedula_albicollis
ENSORLG00020004812	blm	54	65.753	ENSFDAG00000012658	BLM	99	59.630	Fukomys_damarensis
ENSORLG00020004812	blm	100	72.830	ENSFHEG00000002553	blm	100	72.819	Fundulus_heteroclitus
ENSORLG00020004812	blm	99	60.510	ENSGMOG00000016431	blm	99	69.711	Gadus_morhua
ENSORLG00020004812	blm	81	51.704	ENSGALG00000008256	BLM	57	64.930	Gallus_gallus
ENSORLG00020004812	blm	96	81.081	ENSGAFG00000001117	blm	99	74.980	Gambusia_affinis
ENSORLG00020004812	blm	99	67.483	ENSGACG00000010863	blm	100	89.583	Gasterosteus_aculeatus
ENSORLG00020004812	blm	55	66.716	ENSGAGG00000005383	BLM	95	55.059	Gopherus_agassizii
ENSORLG00020004812	blm	57	66.667	ENSGGOG00000007710	BLM	83	74.180	Gorilla_gorilla
ENSORLG00020004812	blm	100	73.232	ENSHBUG00000015943	blm	100	73.232	Haplochromis_burtoni
ENSORLG00020004812	blm	76	54.630	ENSHGLG00000013231	BLM	87	63.723	Heterocephalus_glaber_female
ENSORLG00020004812	blm	75	69.866	ENSHCOG00000011455	blm	100	70.086	Hippocampus_comes
ENSORLG00020004812	blm	76	65.616	ENSIPUG00000000529	blm	86	65.138	Ictalurus_punctatus
ENSORLG00020004812	blm	64	65.776	ENSSTOG00000005000	BLM	65	65.813	Ictidomys_tridecemlineatus
ENSORLG00020004812	blm	100	74.964	ENSKMAG00000016608	blm	100	75.036	Kryptolebias_marmoratus
ENSORLG00020004812	blm	61	79.257	ENSLBEG00000018729	blm	97	79.376	Labrus_bergylta
ENSORLG00020004812	blm	60	67.143	ENSLACG00000006490	BLM	78	55.997	Latimeria_chalumnae
ENSORLG00020004812	blm	99	53.714	ENSLOCG00000014302	blm	100	53.498	Lepisosteus_oculatus
ENSORLG00020004812	blm	57	66.539	ENSMFAG00000042982	BLM	83	73.975	Macaca_fascicularis
ENSORLG00020004812	blm	57	66.539	ENSMMUG00000019526	BLM	83	73.975	Macaca_mulatta
ENSORLG00020004812	blm	57	66.412	ENSMNEG00000031251	BLM	75	76.393	Macaca_nemestrina
ENSORLG00020004812	blm	64	62.675	ENSMLEG00000032934	BLM	84	63.816	Mandrillus_leucophaeus
ENSORLG00020004812	blm	99	72.279	ENSMAMG00000008726	blm	99	72.279	Mastacembelus_armatus
ENSORLG00020004812	blm	100	72.238	ENSMZEG00005022323	blm	100	72.521	Maylandia_zebra
ENSORLG00020004812	blm	87	63.409	ENSMAUG00000008953	Blm	68	63.886	Mesocricetus_auratus
ENSORLG00020004812	blm	65	66.031	ENSMICG00000034442	BLM	60	73.361	Microcebus_murinus
ENSORLG00020004812	blm	87	64.320	ENSMOCG00000016367	Blm	87	64.885	Microtus_ochrogaster
ENSORLG00020004812	blm	100	70.236	ENSMMOG00000006959	blm	100	70.236	Mola_mola
ENSORLG00020004812	blm	63	66.415	ENSMODG00000019449	BLM	62	66.878	Monodelphis_domestica
ENSORLG00020004812	blm	100	71.848	ENSMALG00000007323	blm	100	71.991	Monopterus_albus
ENSORLG00020004812	blm	71	63.227	MGP_CAROLIEiJ_G0029907	Blm	65	63.139	Mus_caroli
ENSORLG00020004812	blm	60	63.539	ENSMUSG00000030528	Blm	68	63.195	Mus_musculus
ENSORLG00020004812	blm	68	63.658	MGP_PahariEiJ_G0013129	Blm	68	63.810	Mus_pahari
ENSORLG00020004812	blm	88	63.475	MGP_SPRETEiJ_G0031009	Blm	74	63.528	Mus_spretus
ENSORLG00020004812	blm	80	51.721	ENSMLUG00000014697	BLM	80	51.682	Myotis_lucifugus
ENSORLG00020004812	blm	87	63.114	ENSNGAG00000001275	Blm	70	62.981	Nannospalax_galili
ENSORLG00020004812	blm	100	72.669	ENSNBRG00000019702	blm	100	73.023	Neolamprologus_brichardi
ENSORLG00020004812	blm	57	63.985	ENSNLEG00000012087	BLM	82	70.082	Nomascus_leucogenys
ENSORLG00020004812	blm	67	58.255	ENSMEUG00000007253	BLM	66	58.294	Notamacropus_eugenii
ENSORLG00020004812	blm	53	65.517	ENSOPRG00000011667	BLM	62	65.517	Ochotona_princeps
ENSORLG00020004812	blm	57	61.168	ENSODEG00000015373	BLM	99	51.607	Octodon_degus
ENSORLG00020004812	blm	100	69.443	ENSONIG00000015193	blm	100	69.938	Oreochromis_niloticus
ENSORLG00020004812	blm	56	65.762	ENSOANG00000009316	-	100	65.762	Ornithorhynchus_anatinus
ENSORLG00020004812	blm	85	65.473	ENSOCUG00000013969	BLM	70	65.173	Oryctolagus_cuniculus
ENSORLG00020004812	blm	100	98.492	ENSORLG00000008110	blm	100	98.492	Oryzias_latipes
ENSORLG00020004812	blm	100	98.421	ENSORLG00015018640	blm	100	98.421	Oryzias_latipes_hsok
ENSORLG00020004812	blm	100	89.731	ENSOMEG00000023545	blm	100	89.731	Oryzias_melastigma
ENSORLG00020004812	blm	74	65.385	ENSOGAG00000005708	BLM	71	65.385	Otolemur_garnettii
ENSORLG00020004812	blm	87	64.176	ENSOARG00000012875	BLM	87	64.014	Ovis_aries
ENSORLG00020004812	blm	57	66.156	ENSPPAG00000032173	BLM	83	73.975	Pan_paniscus
ENSORLG00020004812	blm	64	65.857	ENSPPRG00000002471	BLM	60	73.361	Panthera_pardus
ENSORLG00020004812	blm	64	65.217	ENSPTIG00000016168	BLM	59	72.764	Panthera_tigris_altaica
ENSORLG00020004812	blm	57	66.581	ENSPTRG00000007460	BLM	83	73.717	Pan_troglodytes
ENSORLG00020004812	blm	64	66.284	ENSPANG00000018572	BLM	83	73.770	Papio_anubis
ENSORLG00020004812	blm	99	56.280	ENSPKIG00000008954	blm	99	56.280	Paramormyrops_kingsleyae
ENSORLG00020004812	blm	71	69.848	ENSPMGG00000006629	blm	100	70.397	Periophthalmus_magnuspinnatus
ENSORLG00020004812	blm	64	66.752	ENSPEMG00000017348	Blm	64	66.752	Peromyscus_maniculatus_bairdii
ENSORLG00020004812	blm	87	63.789	ENSPCIG00000006609	BLM	68	62.558	Phascolarctos_cinereus
ENSORLG00020004812	blm	100	72.314	ENSPFOG00000005059	blm	100	73.146	Poecilia_formosa
ENSORLG00020004812	blm	100	72.150	ENSPLAG00000017344	blm	100	73.055	Poecilia_latipinna
ENSORLG00020004812	blm	100	72.242	ENSPMEG00000000321	blm	100	73.074	Poecilia_mexicana
ENSORLG00020004812	blm	100	71.377	ENSPREG00000007715	blm	100	72.354	Poecilia_reticulata
ENSORLG00020004812	blm	76	54.009	ENSPPYG00000006784	BLM	99	45.553	Pongo_abelii
ENSORLG00020004812	blm	60	61.820	ENSPCAG00000008960	BLM	59	61.820	Procavia_capensis
ENSORLG00020004812	blm	85	58.184	ENSPCOG00000000439	BLM	84	58.184	Propithecus_coquereli
ENSORLG00020004812	blm	60	76.066	ENSPVAG00000011642	BLM	59	76.066	Pteropus_vampyrus
ENSORLG00020004812	blm	100	65.186	ENSPNYG00000010956	blm	100	65.115	Pundamilia_nyererei
ENSORLG00020004812	blm	100	59.030	ENSPNAG00000011714	blm	100	59.621	Pygocentrus_nattereri
ENSORLG00020004812	blm	88	63.333	ENSRNOG00000011213	Blm	68	63.333	Rattus_norvegicus
ENSORLG00020004812	blm	61	65.987	ENSRBIG00000029656	BLM	76	76.221	Rhinopithecus_bieti
ENSORLG00020004812	blm	65	65.987	ENSRROG00000037871	BLM	83	73.265	Rhinopithecus_roxellana
ENSORLG00020004812	blm	88	63.102	ENSSHAG00000007988	BLM	87	63.084	Sarcophilus_harrisii
ENSORLG00020004812	blm	66	73.703	ENSSFOG00015015462	blm	74	73.703	Scleropages_formosus
ENSORLG00020004812	blm	100	71.971	ENSSMAG00000001120	blm	100	72.186	Scophthalmus_maximus
ENSORLG00020004812	blm	100	71.711	ENSSDUG00000010955	blm	100	72.546	Seriola_dumerili
ENSORLG00020004812	blm	100	71.904	ENSSLDG00000000634	blm	100	72.045	Seriola_lalandi_dorsalis
ENSORLG00020004812	blm	57	61.175	ENSSARG00000006398	BLM	59	60.764	Sorex_araneus
ENSORLG00020004812	blm	76	53.939	ENSSPUG00000000013	BLM	97	52.189	Sphenodon_punctatus
ENSORLG00020004812	blm	99	73.873	ENSSPAG00000013999	blm	99	74.225	Stegastes_partitus
ENSORLG00020004812	blm	85	66.411	ENSSSCG00000001816	BLM	82	69.510	Sus_scrofa
ENSORLG00020004812	blm	70	54.765	ENSTGUG00000009959	-	74	54.895	Taeniopygia_guttata
ENSORLG00020004812	blm	99	67.870	ENSTRUG00000019860	blm	99	68.014	Takifugu_rubripes
ENSORLG00020004812	blm	99	64.610	ENSTNIG00000019246	blm	99	65.156	Tetraodon_nigroviridis
ENSORLG00020004812	blm	65	66.368	ENSTTRG00000016386	BLM	64	66.242	Tursiops_truncatus
ENSORLG00020004812	blm	84	65.557	ENSUMAG00000009105	BLM	95	68.100	Ursus_maritimus
ENSORLG00020004812	blm	86	62.580	ENSVPAG00000000085	BLM	85	62.548	Vicugna_pacos
ENSORLG00020004812	blm	59	77.778	ENSVVUG00000006402	BLM	62	77.778	Vulpes_vulpes
ENSORLG00020004812	blm	92	61.323	ENSXETG00000007847	blm	61	66.794	Xenopus_tropicalis
ENSORLG00020004812	blm	100	70.198	ENSXCOG00000020227	blm	100	70.833	Xiphophorus_couchianus
ENSORLG00020004812	blm	100	72.548	ENSXMAG00000002951	blm	100	72.618	Xiphophorus_maculatus