EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020005131 (Gene tree)
Gene ID: -
Gene Symbol: rab12
Alias: -
Full Name: RAB12%2C member RAS oncogene family
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 13537 bases
Position: chr17:3448972-3462508
Accession: ZDB-GENE-050522-555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020004341	MMR_HSR1	PF01926.23	5.8e-07	1	1
ENSORLP00020004345	MMR_HSR1	PF01926.23	6.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020008140	-	2662	-	ENSORLP00020004341	233 (aa)	-	-
ENSORLT00020008126	-	3541	-	ENSORLP00020004345	242 (aa)	-	-

Gene Model

Click here to download ENSORLG00020005131's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020005131's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020005131	rab12	73	37.143	ENSORLG00020005240	RAB29	85	37.143
ENSORLG00020005131	rab12	70	47.561	ENSORLG00020008333	rab18a	79	47.561
ENSORLG00020005131	rab12	69	38.750	ENSORLG00020020922	rab5aa	77	37.500
ENSORLG00020005131	rab12	72	47.619	ENSORLG00020021071	zgc:171927	80	47.093
ENSORLG00020005131	rab12	83	37.000	ENSORLG00020001816	rab6a	78	41.667
ENSORLG00020005131	rab12	80	47.423	ENSORLG00020000892	rab1ab	83	50.296
ENSORLG00020005131	rab12	70	37.423	ENSORLG00020008388	rab5c	77	36.905
ENSORLG00020005131	rab12	88	37.104	ENSORLG00020018986	rab14	82	40.860
ENSORLG00020005131	rab12	75	30.114	ENSORLG00020010114	-	94	30.114
ENSORLG00020005131	rab12	83	32.843	ENSORLG00020008512	-	84	35.882
ENSORLG00020005131	rab12	71	45.181	ENSORLG00020004905	RAB15	83	43.931
ENSORLG00020005131	rab12	80	35.859	ENSORLG00020020266	rab33a	59	39.634
ENSORLG00020005131	rab12	90	38.863	ENSORLG00020015717	-	72	40.909
ENSORLG00020005131	rab12	71	34.320	ENSORLG00020016139	rab34b	62	34.320
ENSORLG00020005131	rab12	78	45.604	ENSORLG00020011590	rab18b	87	45.604
ENSORLG00020005131	rab12	78	36.649	ENSORLG00020000604	rab41	73	39.744
ENSORLG00020005131	rab12	84	44.828	ENSORLG00020021697	-	92	46.774
ENSORLG00020005131	rab12	70	34.524	ENSORLG00020000483	rab9a	83	34.524
ENSORLG00020005131	rab12	75	41.379	ENSORLG00020000867	si:dkey-16l2.16	86	39.891
ENSORLG00020005131	rab12	75	50.532	ENSORLG00020021663	rab3db	92	47.291
ENSORLG00020005131	rab12	83	30.392	ENSORLG00020009158	rab9b	80	33.929
ENSORLG00020005131	rab12	84	37.963	ENSORLG00020020816	rab11ba	89	39.175
ENSORLG00020005131	rab12	84	38.350	ENSORLG00020020811	rab25a	66	38.350
ENSORLG00020005131	rab12	75	49.714	ENSORLG00020009535	-	87	49.714
ENSORLG00020005131	rab12	65	32.099	ENSORLG00020020961	kras	95	31.977
ENSORLG00020005131	rab12	83	34.906	ENSORLG00020020277	si:dkey-34d22.5	72	40.881
ENSORLG00020005131	rab12	71	42.515	ENSORLG00020019269	RAB39B	78	42.515
ENSORLG00020005131	rab12	84	38.679	ENSORLG00020020844	RAB11B	89	39.691
ENSORLG00020005131	rab12	74	47.093	ENSORLG00020015288	rab30	84	47.093
ENSORLG00020005131	rab12	71	31.737	ENSORLG00020002801	rheb	89	31.737
ENSORLG00020005131	rab12	81	41.624	ENSORLG00020018259	rab15	82	45.143
ENSORLG00020005131	rab12	84	38.095	ENSORLG00020013747	rab11al	87	40.741
ENSORLG00020005131	rab12	77	32.990	ENSORLG00020020220	rab23	78	34.568
ENSORLG00020005131	rab12	64	37.179	ENSORLG00020013870	-	64	37.179
ENSORLG00020005131	rab12	72	33.533	ENSORLG00020001721	rabl2	72	33.533
ENSORLG00020005131	rab12	79	37.931	ENSORLG00020018196	rab33ba	85	37.931
ENSORLG00020005131	rab12	84	39.320	ENSORLG00020013719	rab25b	86	42.197
ENSORLG00020005131	rab12	70	31.395	ENSORLG00020013690	zgc:55558	98	31.351
ENSORLG00020005131	rab12	77	40.314	ENSORLG00020012685	zgc:101559	80	40.314
ENSORLG00020005131	rab12	79	37.173	ENSORLG00020013337	rab6bb	90	37.569
ENSORLG00020005131	rab12	82	32.673	ENSORLG00020019465	si:dkey-13a21.4	81	35.714
ENSORLG00020005131	rab12	67	39.264	ENSORLG00020010772	rab6ba	84	36.813
ENSORLG00020005131	rab12	68	32.075	ENSORLG00020005150	rhebl1	85	32.075
ENSORLG00020005131	rab12	81	34.171	ENSORLG00020005952	rab7a	81	37.278
ENSORLG00020005131	rab12	80	41.237	ENSORLG00020020035	rab2a	91	41.237
ENSORLG00020005131	rab12	84	38.889	ENSORLG00020019393	rab11bb	89	39.691
ENSORLG00020005131	rab12	64	31.210	ENSORLG00020012306	si:ch73-116o1.2	80	31.548
ENSORLG00020005131	rab12	76	39.785	ENSORLG00020013895	rab42a	85	39.785
ENSORLG00020005131	rab12	69	36.585	ENSORLG00020010041	rab34a	64	35.465

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020005131	rab12	93	84.000	ENSG00000206418	RAB12	100	83.607	Homo_sapiens
ENSORLG00020005131	rab12	90	78.082	ENSAMEG00000007452	RAB12	94	81.735	Ailuropoda_melanoleuca
ENSORLG00020005131	rab12	100	96.311	ENSACIG00000020616	rab12	100	96.311	Amphilophus_citrinellus
ENSORLG00020005131	rab12	100	94.239	ENSAOCG00000002130	rab12	100	95.885	Amphiprion_ocellaris
ENSORLG00020005131	rab12	100	94.239	ENSAPEG00000013255	rab12	100	95.885	Amphiprion_percula
ENSORLG00020005131	rab12	100	96.281	ENSATEG00000019683	rab12	100	96.281	Anabas_testudineus
ENSORLG00020005131	rab12	83	89.500	ENSACAG00000003360	RAB12	86	87.892	Anolis_carolinensis
ENSORLG00020005131	rab12	100	97.531	ENSACLG00000007696	rab12	100	97.531	Astatotilapia_calliptera
ENSORLG00020005131	rab12	100	88.618	ENSAMXG00000004882	rab12	100	89.431	Astyanax_mexicanus
ENSORLG00020005131	rab12	93	84.444	ENSBTAG00000010356	RAB12	100	84.016	Bos_taurus
ENSORLG00020005131	rab12	93	84.956	ENSCJAG00000015468	RAB12	72	84.490	Callithrix_jacchus
ENSORLG00020005131	rab12	93	84.000	ENSCAFG00020023721	RAB12	84	83.607	Canis_lupus_dingo
ENSORLG00020005131	rab12	93	84.444	ENSCHIG00000016103	RAB12	100	84.016	Capra_hircus
ENSORLG00020005131	rab12	86	85.238	ENSCPOG00000022689	RAB12	100	89.524	Cavia_porcellus
ENSORLG00020005131	rab12	93	84.956	ENSCCAG00000022862	RAB12	100	84.490	Cebus_capucinus
ENSORLG00020005131	rab12	91	84.375	ENSCATG00000037784	RAB12	93	87.892	Cercocebus_atys
ENSORLG00020005131	rab12	84	88.780	ENSCSAG00000017569	RAB12	64	87.892	Chlorocebus_sabaeus
ENSORLG00020005131	rab12	93	83.628	ENSCPBG00000028375	RAB12	100	83.265	Chrysemys_picta_bellii
ENSORLG00020005131	rab12	90	84.475	ENSCANG00000031453	RAB12	99	88.128	Colobus_angolensis_palliatus
ENSORLG00020005131	rab12	93	84.071	ENSCGRG00001006958	Rab12	83	83.265	Cricetulus_griseus_chok1gshd
ENSORLG00020005131	rab12	100	93.827	ENSCSEG00000016933	rab12	100	95.473	Cynoglossus_semilaevis
ENSORLG00020005131	rab12	100	95.935	ENSCVAG00000003539	rab12	100	95.935	Cyprinodon_variegatus
ENSORLG00020005131	rab12	100	89.256	ENSDARG00000089428	rab12	94	94.091	Danio_rerio
ENSORLG00020005131	rab12	84	88.293	ENSDNOG00000046064	RAB12	51	87.444	Dasypus_novemcinctus
ENSORLG00020005131	rab12	93	83.260	ENSDORG00000008920	Rab12	98	87.892	Dipodomys_ordii
ENSORLG00020005131	rab12	82	65.128	ENSEBUG00000006581	rab12	92	66.489	Eptatretus_burgeri
ENSORLG00020005131	rab12	93	84.071	ENSEASG00005002926	RAB12	83	83.673	Equus_asinus_asinus
ENSORLG00020005131	rab12	93	84.071	ENSECAG00000007384	RAB12	71	83.673	Equus_caballus
ENSORLG00020005131	rab12	100	89.669	ENSELUG00000007123	rab12	100	88.017	Esox_lucius
ENSORLG00020005131	rab12	93	84.000	ENSFCAG00000027710	RAB12	72	83.607	Felis_catus
ENSORLG00020005131	rab12	100	93.061	ENSFHEG00000004319	rab12	100	94.694	Fundulus_heteroclitus
ENSORLG00020005131	rab12	97	86.404	ENSGMOG00000012335	rab12	94	84.649	Gadus_morhua
ENSORLG00020005131	rab12	93	83.772	ENSGALG00000033608	RAB12	89	87.892	Gallus_gallus
ENSORLG00020005131	rab12	98	89.565	ENSGACG00000016639	rab12	100	94.009	Gasterosteus_aculeatus
ENSORLG00020005131	rab12	93	83.186	ENSGAGG00000007278	RAB12	100	82.857	Gopherus_agassizii
ENSORLG00020005131	rab12	100	97.531	ENSHBUG00000008497	rab12	100	97.531	Haplochromis_burtoni
ENSORLG00020005131	rab12	95	81.034	ENSHGLG00000006189	RAB12	86	88.235	Heterocephalus_glaber_female
ENSORLG00020005131	rab12	100	90.535	ENSHCOG00000012376	rab12	100	90.123	Hippocampus_comes
ENSORLG00020005131	rab12	91	93.665	ENSIPUG00000017401	rab12	90	93.636	Ictalurus_punctatus
ENSORLG00020005131	rab12	93	81.858	ENSSTOG00000025122	RAB12	96	87.671	Ictidomys_tridecemlineatus
ENSORLG00020005131	rab12	91	84.375	ENSJJAG00000019064	Rab12	98	87.892	Jaculus_jaculus
ENSORLG00020005131	rab12	100	92.975	ENSKMAG00000020056	rab12	100	92.149	Kryptolebias_marmoratus
ENSORLG00020005131	rab12	100	96.694	ENSLBEG00000013756	rab12	100	96.694	Labrus_bergylta
ENSORLG00020005131	rab12	91	88.341	ENSLACG00000010461	RAB12	90	88.341	Latimeria_chalumnae
ENSORLG00020005131	rab12	93	86.026	ENSLOCG00000002680	rab12	100	86.290	Lepisosteus_oculatus
ENSORLG00020005131	rab12	93	84.141	ENSMFAG00000043551	RAB12	91	87.892	Macaca_fascicularis
ENSORLG00020005131	rab12	84	88.780	ENSMNEG00000040853	RAB12	88	87.892	Macaca_nemestrina
ENSORLG00020005131	rab12	100	96.281	ENSMAMG00000006862	rab12	100	96.281	Mastacembelus_armatus
ENSORLG00020005131	rab12	100	97.531	ENSMZEG00005024316	rab12	100	97.531	Maylandia_zebra
ENSORLG00020005131	rab12	83	84.804	ENSMGAG00000009197	RAB12	100	88.725	Meleagris_gallopavo
ENSORLG00020005131	rab12	93	84.071	ENSMAUG00000008371	Rab12	83	83.265	Mesocricetus_auratus
ENSORLG00020005131	rab12	91	83.929	ENSMICG00000030661	RAB12	93	87.444	Microcebus_murinus
ENSORLG00020005131	rab12	90	84.018	ENSMOCG00000000452	Rab12	100	87.671	Microtus_ochrogaster
ENSORLG00020005131	rab12	86	88.517	ENSMODG00000021452	RAB12	66	88.341	Monodelphis_domestica
ENSORLG00020005131	rab12	100	93.388	ENSMALG00000015762	rab12	100	93.388	Monopterus_albus
ENSORLG00020005131	rab12	93	85.841	MGP_CAROLIEiJ_G0021839	Rab12	84	84.898	Mus_caroli
ENSORLG00020005131	rab12	93	85.841	ENSMUSG00000023460	Rab12	100	84.898	Mus_musculus
ENSORLG00020005131	rab12	93	85.841	MGP_PahariEiJ_G0020826	Rab12	100	84.898	Mus_pahari
ENSORLG00020005131	rab12	93	85.841	MGP_SPRETEiJ_G0022750	Rab12	83	84.898	Mus_spretus
ENSORLG00020005131	rab12	100	80.408	ENSMLUG00000002883	RAB12	92	87.892	Myotis_lucifugus
ENSORLG00020005131	rab12	95	81.545	ENSNGAG00000024103	-	95	87.444	Nannospalax_galili
ENSORLG00020005131	rab12	91	77.232	ENSNGAG00000019722	-	91	77.130	Nannospalax_galili
ENSORLG00020005131	rab12	100	97.531	ENSNBRG00000014428	rab12	100	97.531	Neolamprologus_brichardi
ENSORLG00020005131	rab12	93	83.556	ENSNLEG00000006939	RAB12	100	83.197	Nomascus_leucogenys
ENSORLG00020005131	rab12	100	81.301	ENSMEUG00000000493	RAB12	91	88.341	Notamacropus_eugenii
ENSORLG00020005131	rab12	90	85.388	ENSODEG00000006414	RAB12	100	89.041	Octodon_degus
ENSORLG00020005131	rab12	100	97.531	ENSONIG00000018469	rab12	100	97.531	Oreochromis_niloticus
ENSORLG00020005131	rab12	100	99.587	ENSORLG00000003902	rab12	100	99.587	Oryzias_latipes
ENSORLG00020005131	rab12	100	99.174	ENSORLG00015007869	rab12	100	99.174	Oryzias_latipes_hsok
ENSORLG00020005131	rab12	100	98.760	ENSOMEG00000008191	rab12	100	98.760	Oryzias_melastigma
ENSORLG00020005131	rab12	86	84.762	ENSOGAG00000028002	RAB12	99	88.571	Otolemur_garnettii
ENSORLG00020005131	rab12	79	89.529	ENSOARG00000000728	RAB12	88	87.442	Ovis_aries
ENSORLG00020005131	rab12	85	84.541	ENSPPAG00000009152	RAB12	97	88.835	Pan_paniscus
ENSORLG00020005131	rab12	93	84.000	ENSPPRG00000024521	RAB12	100	83.607	Panthera_pardus
ENSORLG00020005131	rab12	93	84.000	ENSPTRG00000009853	RAB12	100	83.607	Pan_troglodytes
ENSORLG00020005131	rab12	93	84.211	ENSPANG00000009320	RAB12	90	88.341	Papio_anubis
ENSORLG00020005131	rab12	100	88.477	ENSPKIG00000008579	rab12	100	88.889	Paramormyrops_kingsleyae
ENSORLG00020005131	rab12	100	90.909	ENSPMGG00000001890	rab12	100	90.909	Periophthalmus_magnuspinnatus
ENSORLG00020005131	rab12	93	84.513	ENSPEMG00000021032	Rab12	84	83.673	Peromyscus_maniculatus_bairdii
ENSORLG00020005131	rab12	93	85.022	ENSPCIG00000010453	RAB12	56	88.341	Phascolarctos_cinereus
ENSORLG00020005131	rab12	100	94.262	ENSPFOG00000001579	rab12	100	94.262	Poecilia_formosa
ENSORLG00020005131	rab12	100	94.262	ENSPLAG00000013594	rab12	100	94.262	Poecilia_latipinna
ENSORLG00020005131	rab12	100	94.262	ENSPMEG00000010417	rab12	100	94.262	Poecilia_mexicana
ENSORLG00020005131	rab12	100	95.902	ENSPREG00000017487	rab12	100	95.902	Poecilia_reticulata
ENSORLG00020005131	rab12	93	84.000	ENSPPYG00000009015	-	72	83.607	Pongo_abelii
ENSORLG00020005131	rab12	93	83.556	ENSPCAG00000015007	RAB12	100	83.197	Procavia_capensis
ENSORLG00020005131	rab12	93	84.000	ENSPCOG00000019816	RAB12	100	83.607	Propithecus_coquereli
ENSORLG00020005131	rab12	93	83.556	ENSPVAG00000002757	RAB12	100	83.197	Pteropus_vampyrus
ENSORLG00020005131	rab12	100	97.531	ENSPNYG00000023905	rab12	100	97.531	Pundamilia_nyererei
ENSORLG00020005131	rab12	100	97.531	ENSPNYG00000005654	rab12	100	97.531	Pundamilia_nyererei
ENSORLG00020005131	rab12	100	87.805	ENSPNAG00000015031	rab12	100	88.618	Pygocentrus_nattereri
ENSORLG00020005131	rab12	93	82.819	ENSRNOG00000019295	Rab12	91	82.379	Rattus_norvegicus
ENSORLG00020005131	rab12	91	84.375	ENSRBIG00000028760	RAB12	96	87.892	Rhinopithecus_bieti
ENSORLG00020005131	rab12	91	84.375	ENSRROG00000019249	RAB12	93	87.892	Rhinopithecus_roxellana
ENSORLG00020005131	rab12	95	79.654	ENSSBOG00000021125	RAB12	80	88.517	Saimiri_boliviensis_boliviensis
ENSORLG00020005131	rab12	93	84.513	ENSSHAG00000001489	RAB12	90	88.670	Sarcophilus_harrisii
ENSORLG00020005131	rab12	100	95.041	ENSSMAG00000012678	rab12	100	95.041	Scophthalmus_maximus
ENSORLG00020005131	rab12	100	97.107	ENSSDUG00000008505	rab12	100	97.107	Seriola_dumerili
ENSORLG00020005131	rab12	100	97.107	ENSSLDG00000022239	rab12	100	97.107	Seriola_lalandi_dorsalis
ENSORLG00020005131	rab12	90	88.073	ENSSPUG00000003222	RAB12	91	88.789	Sphenodon_punctatus
ENSORLG00020005131	rab12	100	96.296	ENSSPAG00000010822	rab12	100	96.296	Stegastes_partitus
ENSORLG00020005131	rab12	93	84.000	ENSSSCG00000038026	RAB12	91	88.789	Sus_scrofa
ENSORLG00020005131	rab12	86	88.517	ENSTGUG00000009889	RAB12	89	88.341	Taeniopygia_guttata
ENSORLG00020005131	rab12	100	92.975	ENSTRUG00000024455	rab12	100	92.975	Takifugu_rubripes
ENSORLG00020005131	rab12	100	93.802	ENSTNIG00000014859	rab12	100	93.802	Tetraodon_nigroviridis
ENSORLG00020005131	rab12	90	84.475	ENSTTRG00000008711	RAB12	99	88.128	Tursiops_truncatus
ENSORLG00020005131	rab12	93	84.000	ENSUAMG00000018092	RAB12	100	83.607	Ursus_americanus
ENSORLG00020005131	rab12	90	83.710	ENSVVUG00000011748	RAB12	99	87.330	Vulpes_vulpes
ENSORLG00020005131	rab12	87	89.151	ENSXETG00000004289	rab12	72	89.286	Xenopus_tropicalis
ENSORLG00020005131	rab12	100	92.213	ENSXCOG00000019310	rab12	100	92.623	Xiphophorus_couchianus
ENSORLG00020005131	rab12	100	92.623	ENSXMAG00000023617	rab12	100	93.033	Xiphophorus_maculatus