EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSORLG00020005148 (Gene tree)
Gene ID
-
Gene Symbol
csde1
Alias
-
Full Name
cold shock domain containing E1%2C RNA-binding
Gene Type
protein_coding
Species
Oryzias_latipes_hni
Status
putative
Strand
Minus strand
Length
16044 bases
Position
chr7:1417384-1433427
Accession
ZDB-GENE-030131-8623
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00020004289CSDPF00313.223e-8015
ENSORLP00020004289CSDPF00313.223e-8025
ENSORLP00020004289CSDPF00313.223e-8035
ENSORLP00020004289CSDPF00313.223e-8045
ENSORLP00020004289CSDPF00313.223e-8055
ENSORLP00020024001CSDPF00313.224e-8015
ENSORLP00020024001CSDPF00313.224e-8025
ENSORLP00020024001CSDPF00313.224e-8035
ENSORLP00020024001CSDPF00313.224e-8045
ENSORLP00020024001CSDPF00313.224e-8055
ENSORLP00020004337CSDPF00313.224.6e-8015
ENSORLP00020004337CSDPF00313.224.6e-8025
ENSORLP00020004337CSDPF00313.224.6e-8035
ENSORLP00020004337CSDPF00313.224.6e-8045
ENSORLP00020004337CSDPF00313.224.6e-8055
ENSORLP00020004241CSDPF00313.228.7e-8015
ENSORLP00020004241CSDPF00313.228.7e-8025
ENSORLP00020004241CSDPF00313.228.7e-8035
ENSORLP00020004241CSDPF00313.228.7e-8045
ENSORLP00020004241CSDPF00313.228.7e-8055
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00020008292-7756-ENSORLP00020004241902 (aa)--
ENSORLT00020008081-7679-ENSORLP00020024001839 (aa)--
ENSORLT00020008220-7507-ENSORLP00020004289816 (aa)--
ENSORLT00020008137-7639-ENSORLP00020004337850 (aa)--
Gene Model
Click here to download ENSORLG00020005148's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020005148's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00020005148csde19976.577ENSG00000009307CSDE110082.979Homo_sapiens
ENSORLG00020005148csde110091.299ENSAPOG00000015538csde110090.854Acanthochromis_polyacanthus
ENSORLG00020005148csde110072.093ENSAMEG00000017129CSDE19972.024Ailuropoda_melanoleuca
ENSORLG00020005148csde19091.081ENSACIG00000015175csde110091.081Amphilophus_citrinellus
ENSORLG00020005148csde110091.054ENSAOCG00000011510csde110088.274Amphiprion_ocellaris
ENSORLG00020005148csde110091.176ENSAPEG00000007194csde110091.176Amphiprion_percula
ENSORLG00020005148csde110085.190ENSATEG00000003864csde110087.218Anabas_testudineus
ENSORLG00020005148csde110074.632ENSAPLG00000008797CSDE110076.412Anas_platyrhynchos
ENSORLG00020005148csde110077.017ENSACAG00000003120CSDE110078.849Anolis_carolinensis
ENSORLG00020005148csde110074.969ENSANAG00000024665CSDE19875.000Aotus_nancymaae
ENSORLG00020005148csde17762.712ENSANAG00000028396-9362.712Aotus_nancymaae
ENSORLG00020005148csde110089.718ENSACLG00000013296csde110091.855Astatotilapia_calliptera
ENSORLG00020005148csde110078.999ENSAMXG00000007436csde110080.875Astyanax_mexicanus
ENSORLG00020005148csde110075.458ENSBTAG00000000678CSDE110074.812Bos_taurus
ENSORLG00020005148csde110075.092ENSCJAG00000012565CSDE19875.120Callithrix_jacchus
ENSORLG00020005148csde19873.159ENSCAFG00000009618CSDE19873.219Canis_familiaris
ENSORLG00020005148csde110073.072ENSCAFG00020000481CSDE110074.812Canis_lupus_dingo
ENSORLG00020005148csde110075.336ENSCHIG00000017250CSDE110074.687Capra_hircus
ENSORLG00020005148csde110075.458ENSTSYG00000003747CSDE110077.250Carlito_syrichta
ENSORLG00020005148csde19577.301ENSCAPG00000015128CSDE110077.301Cavia_aperea
ENSORLG00020005148csde110071.726ENSCPOG00000040388CSDE110073.308Cavia_porcellus
ENSORLG00020005148csde19755.333ENSCCAG00000030878-9155.333Cebus_capucinus
ENSORLG00020005148csde110075.092ENSCCAG00000036794CSDE110076.875Cebus_capucinus
ENSORLG00020005148csde19557.037ENSCCAG00000033677-9957.109Cebus_capucinus
ENSORLG00020005148csde110075.214ENSCATG00000036962CSDE19875.240Cercocebus_atys
ENSORLG00020005148csde110075.336ENSCLAG00000006618CSDE110077.125Chinchilla_lanigera
ENSORLG00020005148csde110075.214ENSCSAG00000001658CSDE19875.240Chlorocebus_sabaeus
ENSORLG00020005148csde110082.524ENSCHOG00000000918CSDE18980.122Choloepus_hoffmanni
ENSORLG00020005148csde110077.017ENSCPBG00000016547CSDE110078.849Chrysemys_picta_bellii
ENSORLG00020005148csde19842.806ENSCING00000014465-9842.925Ciona_intestinalis
ENSORLG00020005148csde19741.184ENSCSAVG00000008100-10041.354Ciona_savignyi
ENSORLG00020005148csde110075.214ENSCANG00000035096CSDE19875.240Colobus_angolensis_palliatus
ENSORLG00020005148csde18879.323ENSCANG00000031069-9379.323Colobus_angolensis_palliatus
ENSORLG00020005148csde110074.725ENSCGRG00001016833-10076.500Cricetulus_griseus_chok1gshd
ENSORLG00020005148csde110059.486ENSCGRG00001014011-10060.902Cricetulus_griseus_chok1gshd
ENSORLG00020005148csde110060.432ENSCGRG00000005831-10064.865Cricetulus_griseus_crigri
ENSORLG00020005148csde19773.556ENSCGRG00000002225-10073.556Cricetulus_griseus_crigri
ENSORLG00020005148csde110089.281ENSCSEG00000002620csde110087.138Cynoglossus_semilaevis
ENSORLG00020005148csde110089.777ENSCVAG00000001344csde110089.810Cyprinodon_variegatus
ENSORLG00020005148csde110085.452ENSDARG00000074758csde110088.129Danio_rerio
ENSORLG00020005148csde110073.227ENSDNOG00000010287-9474.720Dasypus_novemcinctus
ENSORLG00020005148csde110074.847ENSDORG00000011609Csde110076.625Dipodomys_ordii
ENSORLG00020005148csde19947.535FBgn0263352Unr7948.104Drosophila_melanogaster
ENSORLG00020005148csde19956.933ENSETEG00000013678-9958.291Echinops_telfairi
ENSORLG00020005148csde19579.508ENSETEG00000002491-8672.046Echinops_telfairi
ENSORLG00020005148csde19163.783ENSETEG00000006280-10065.611Echinops_telfairi
ENSORLG00020005148csde17453.630ENSETEG00000007109-9953.630Echinops_telfairi
ENSORLG00020005148csde19953.911ENSEBUG00000008647csde19953.461Eptatretus_burgeri
ENSORLG00020005148csde110075.580ENSEASG00005006284CSDE110077.375Equus_asinus_asinus
ENSORLG00020005148csde110075.580ENSECAG00000020885CSDE110077.375Equus_caballus
ENSORLG00020005148csde19373.298ENSEEUG00000006286CSDE17373.298Erinaceus_europaeus
ENSORLG00020005148csde110086.320ENSELUG00000015507csde110084.677Esox_lucius
ENSORLG00020005148csde110075.458ENSFCAG00000029266CSDE110074.812Felis_catus
ENSORLG00020005148csde110076.650ENSFALG00000003407CSDE110078.473Ficedula_albicollis
ENSORLG00020005148csde19976.126ENSFDAG00000007882CSDE110076.500Fukomys_damarensis
ENSORLG00020005148csde110089.498ENSFHEG00000010799csde110090.476Fundulus_heteroclitus
ENSORLG00020005148csde19984.700ENSGMOG00000012731csde110086.717Gadus_morhua
ENSORLG00020005148csde19876.961ENSGALG00000002139CSDE19878.827Gallus_gallus
ENSORLG00020005148csde19384.211ENSGAFG00000005241csde19586.550Gambusia_affinis
ENSORLG00020005148csde19988.113ENSGACG00000004544csde110090.213Gasterosteus_aculeatus
ENSORLG00020005148csde110077.017ENSGAGG00000017685CSDE110078.849Gopherus_agassizii
ENSORLG00020005148csde110075.214ENSGGOG00000002164CSDE110074.561Gorilla_gorilla
ENSORLG00020005148csde110091.922ENSHBUG00000020315csde110091.351Haplochromis_burtoni
ENSORLG00020005148csde110068.620ENSHGLG00000009620-10070.375Heterocephalus_glaber_female
ENSORLG00020005148csde19766.000ENSHGLG00000010039-10066.000Heterocephalus_glaber_female
ENSORLG00020005148csde19767.718ENSHGLG00000008555-9967.718Heterocephalus_glaber_female
ENSORLG00020005148csde19963.995ENSHGLG00000007471-9865.530Heterocephalus_glaber_female
ENSORLG00020005148csde19960.513ENSHGLG00000000650-9961.952Heterocephalus_glaber_female
ENSORLG00020005148csde110064.994ENSHGLG00000003829-10066.541Heterocephalus_glaber_female
ENSORLG00020005148csde110063.158ENSHGLG00000019549-10064.536Heterocephalus_glaber_female
ENSORLG00020005148csde19962.454ENSHGLG00100007287-9863.945Heterocephalus_glaber_male
ENSORLG00020005148csde110059.731ENSHGLG00100001846-10061.278Heterocephalus_glaber_male
ENSORLG00020005148csde110060.955ENSHGLG00100012072-10062.406Heterocephalus_glaber_male
ENSORLG00020005148csde110074.969ENSHGLG00100019438-10076.750Heterocephalus_glaber_male
ENSORLG00020005148csde19963.780ENSHGLG00100002245-9965.293Heterocephalus_glaber_male
ENSORLG00020005148csde19760.667ENSHGLG00100004833-10060.667Heterocephalus_glaber_male
ENSORLG00020005148csde19461.097ENSHGLG00100004195-10062.651Heterocephalus_glaber_male
ENSORLG00020005148csde19765.778ENSHGLG00100006910-10065.778Heterocephalus_glaber_male
ENSORLG00020005148csde110088.389ENSHCOG00000004158csde110088.507Hippocampus_comes
ENSORLG00020005148csde110078.755ENSIPUG00000000355csde110080.625Ictalurus_punctatus
ENSORLG00020005148csde110061.985ENSSTOG00000030994-10063.478Ictidomys_tridecemlineatus
ENSORLG00020005148csde19355.365ENSSTOG00000032722-9957.051Ictidomys_tridecemlineatus
ENSORLG00020005148csde19976.426ENSJJAG00000019571Csde110076.750Jaculus_jaculus
ENSORLG00020005148csde110089.825ENSKMAG00000005685csde110090.323Kryptolebias_marmoratus
ENSORLG00020005148csde110091.432ENSLBEG00000014770csde110089.290Labrus_bergylta
ENSORLG00020005148csde110073.221ENSLACG00000018452CSDE19972.780Latimeria_chalumnae
ENSORLG00020005148csde110082.353ENSLOCG00000010413csde19883.575Lepisosteus_oculatus
ENSORLG00020005148csde110072.827ENSLAFG00000007150CSDE19674.314Loxodonta_africana
ENSORLG00020005148csde110075.214ENSMFAG00000003674CSDE110074.561Macaca_fascicularis
ENSORLG00020005148csde110075.214ENSMMUG00000001974CSDE110074.561Macaca_mulatta
ENSORLG00020005148csde110075.214ENSMNEG00000045247CSDE19875.240Macaca_nemestrina
ENSORLG00020005148csde110074.969ENSMLEG00000038673CSDE19875.000Mandrillus_leucophaeus
ENSORLG00020005148csde110091.422ENSMAMG00000008821csde110089.277Mastacembelus_armatus
ENSORLG00020005148csde110091.422ENSMZEG00005021675csde110091.422Maylandia_zebra
ENSORLG00020005148csde19877.086ENSMGAG00000016381CSDE19878.954Meleagris_gallopavo
ENSORLG00020005148csde110074.725ENSMAUG00000014031Csde110076.500Mesocricetus_auratus
ENSORLG00020005148csde110075.214ENSMICG00000002050CSDE19875.240Microcebus_murinus
ENSORLG00020005148csde110074.725ENSMOCG00000018960Csde110076.500Microtus_ochrogaster
ENSORLG00020005148csde110086.169ENSMMOG00000015075csde110088.221Mola_mola
ENSORLG00020005148csde110076.313ENSMODG00000004685CSDE110078.125Monodelphis_domestica
ENSORLG00020005148csde110086.169ENSMALG00000007132csde110088.221Monopterus_albus
ENSORLG00020005148csde110074.603MGP_CAROLIEiJ_G0025444Csde110089.216Mus_caroli
ENSORLG00020005148csde110074.847ENSMUSG00000068823Csde19989.216Mus_musculus
ENSORLG00020005148csde110074.847MGP_PahariEiJ_G0026888Csde110089.216Mus_pahari
ENSORLG00020005148csde110074.847MGP_SPRETEiJ_G0026394Csde110089.216Mus_spretus
ENSORLG00020005148csde19875.592ENSMPUG00000005753CSDE19977.423Mustela_putorius_furo
ENSORLG00020005148csde110072.583ENSMLUG00000005681CSDE19872.771Myotis_lucifugus
ENSORLG00020005148csde19252.667ENSNGAG00000012599-10052.667Nannospalax_galili
ENSORLG00020005148csde19975.976ENSNGAG00000021929Csde110076.375Nannospalax_galili
ENSORLG00020005148csde110086.291ENSNBRG00000020808csde110088.346Neolamprologus_brichardi
ENSORLG00020005148csde110075.214ENSNLEG00000004842CSDE19875.240Nomascus_leucogenys
ENSORLG00020005148csde19882.524ENSMEUG00000002677CSDE19582.524Notamacropus_eugenii
ENSORLG00020005148csde19882.524ENSOPRG00000005002CSDE17682.524Ochotona_princeps
ENSORLG00020005148csde19976.126ENSODEG00000007383-10076.375Octodon_degus
ENSORLG00020005148csde19752.759ENSODEG00000005979-9852.759Octodon_degus
ENSORLG00020005148csde110091.799ENSONIG00000009309csde110091.799Oreochromis_niloticus
ENSORLG00020005148csde110081.356ENSOANG00000003346-8381.356Ornithorhynchus_anatinus
ENSORLG00020005148csde110074.969ENSOCUG00000016438CSDE19975.268Oryctolagus_cuniculus
ENSORLG00020005148csde110099.632ENSORLG00000000707csde110099.632Oryzias_latipes
ENSORLG00020005148csde110099.557ENSORLG00015019415csde110099.557Oryzias_latipes_hsok
ENSORLG00020005148csde110096.782ENSOMEG00000015656csde110096.782Oryzias_melastigma
ENSORLG00020005148csde110072.950ENSOGAG00000012127CSDE19873.012Otolemur_garnettii
ENSORLG00020005148csde110072.950ENSOARG00000020034CSDE19873.012Ovis_aries
ENSORLG00020005148csde110075.214ENSPPAG00000025861CSDE110074.561Pan_paniscus
ENSORLG00020005148csde110075.458ENSPPRG00000006747CSDE19875.481Panthera_pardus
ENSORLG00020005148csde110075.458ENSPTIG00000015468CSDE110077.250Panthera_tigris_altaica
ENSORLG00020005148csde110075.214ENSPTRG00000033721CSDE110077.000Pan_troglodytes
ENSORLG00020005148csde110075.214ENSPANG00000018873CSDE110074.561Papio_anubis
ENSORLG00020005148csde110079.044ENSPKIG00000009459csde110080.928Paramormyrops_kingsleyae
ENSORLG00020005148csde19677.707ENSPSIG00000003823CSDE19680.973Pelodiscus_sinensis
ENSORLG00020005148csde110083.354ENSPMGG00000000772csde110085.338Periophthalmus_magnuspinnatus
ENSORLG00020005148csde110074.969ENSPEMG00000020357-10076.750Peromyscus_maniculatus_bairdii
ENSORLG00020005148csde110076.435ENSPCIG00000022587CSDE110078.250Phascolarctos_cinereus
ENSORLG00020005148csde19788.180ENSPFOG00000012664csde110088.647Poecilia_formosa
ENSORLG00020005148csde19583.564ENSPLAG00000017680csde19383.564Poecilia_latipinna
ENSORLG00020005148csde19584.025ENSPMEG00000005094csde19584.025Poecilia_mexicana
ENSORLG00020005148csde110089.573ENSPREG00000011631csde110089.810Poecilia_reticulata
ENSORLG00020005148csde110075.092ENSPPYG00000000996CSDE110076.875Pongo_abelii
ENSORLG00020005148csde110083.495ENSPCAG00000014368CSDE19083.495Procavia_capensis
ENSORLG00020005148csde18869.888ENSPCOG00000008223-9269.888Propithecus_coquereli
ENSORLG00020005148csde110075.336ENSPCOG00000017893CSDE110077.125Propithecus_coquereli
ENSORLG00020005148csde110067.931ENSPVAG00000008225CSDE19968.383Pteropus_vampyrus
ENSORLG00020005148csde110090.810ENSPNYG00000013745csde110090.994Pundamilia_nyererei
ENSORLG00020005148csde110084.701ENSPNAG00000001958csde110084.701Pygocentrus_nattereri
ENSORLG00020005148csde110074.725ENSRNOG00000061058Csde110076.500Rattus_norvegicus
ENSORLG00020005148csde110072.283ENSRBIG00000038088-9973.873Rhinopithecus_bieti
ENSORLG00020005148csde110070.488ENSRBIG00000038966-9870.708Rhinopithecus_bieti
ENSORLG00020005148csde110075.214ENSRROG00000043101CSDE19875.240Rhinopithecus_roxellana
ENSORLG00020005148csde110075.092ENSSBOG00000035592CSDE19875.120Saimiri_boliviensis_boliviensis
ENSORLG00020005148csde110074.051ENSSHAG00000009831CSDE110075.815Sarcophilus_harrisii
ENSORLG00020005148csde110090.476ENSSFOG00015007498csde110083.064Scleropages_formosus
ENSORLG00020005148csde110091.789ENSSMAG00000007203csde110091.789Scophthalmus_maximus
ENSORLG00020005148csde110091.422ENSSDUG00000015380csde110089.277Seriola_dumerili
ENSORLG00020005148csde110091.299ENSSLDG00000008819csde110091.343Seriola_lalandi_dorsalis
ENSORLG00020005148csde110072.705ENSSARG00000000738CSDE110071.795Sorex_araneus
ENSORLG00020005148csde110077.139ENSSPUG00000008714CSDE110078.974Sphenodon_punctatus
ENSORLG00020005148csde110091.176ENSSPAG00000000716csde110091.131Stegastes_partitus
ENSORLG00020005148csde110075.580ENSSSCG00000006752CSDE110074.937Sus_scrofa
ENSORLG00020005148csde110075.732ENSTGUG00000000972CSDE110077.528Taeniopygia_guttata
ENSORLG00020005148csde110080.025ENSTRUG00000007996csde110081.932Takifugu_rubripes
ENSORLG00020005148csde16990.421ENSTNIG00000010878csde110090.421Tetraodon_nigroviridis
ENSORLG00020005148csde18274.684ENSTBEG00000011880-6574.684Tupaia_belangeri
ENSORLG00020005148csde110072.583ENSTTRG00000015583CSDE19872.530Tursiops_truncatus
ENSORLG00020005148csde18867.958ENSUAMG00000024289-9969.939Ursus_americanus
ENSORLG00020005148csde19281.433ENSUAMG00000021779-9881.433Ursus_americanus
ENSORLG00020005148csde110066.952ENSUMAG00000009720-10067.482Ursus_maritimus
ENSORLG00020005148csde19772.986ENSUMAG00000011714-9972.986Ursus_maritimus
ENSORLG00020005148csde110074.648ENSVPAG00000000749CSDE18374.648Vicugna_pacos
ENSORLG00020005148csde19374.043ENSVVUG00000009890CSDE19476.093Vulpes_vulpes
ENSORLG00020005148csde110075.669ENSXETG00000021448csde110077.460Xenopus_tropicalis
ENSORLG00020005148csde19583.826ENSXCOG00000000035csde19983.826Xiphophorus_couchianus
ENSORLG00020005148csde110089.894ENSXMAG00000009080csde110090.012Xiphophorus_maculatus

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