EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020005513 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: -
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 19789 bases
Position: chr20:9707653-9727441
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020024213	RRM_1	PF00076.22	4.3e-15	1	2
ENSORLP00020024213	RRM_1	PF00076.22	4.3e-15	2	2
ENSORLP00020024227	RRM_1	PF00076.22	5.2e-15	1	2
ENSORLP00020024227	RRM_1	PF00076.22	5.2e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020007527	-	6881	-	ENSORLP00020024213	470 (aa)	-	-
ENSORLT00020007505	-	6971	-	ENSORLP00020024227	500 (aa)	-	-

Gene Model

Click here to download ENSORLG00020005513's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020005513's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020005513	rnpc3	97	54.747	ENSG00000185946	RNPC3	96	54.887	Homo_sapiens
ENSORLG00020005513	rnpc3	100	77.734	ENSAPOG00000017371	rnpc3	100	77.734	Acanthochromis_polyacanthus
ENSORLG00020005513	rnpc3	97	52.929	ENSAMEG00000001694	RNPC3	95	54.527	Ailuropoda_melanoleuca
ENSORLG00020005513	rnpc3	99	74.898	ENSACIG00000021043	rnpc3	99	74.898	Amphilophus_citrinellus
ENSORLG00020005513	rnpc3	100	77.255	ENSAOCG00000014052	rnpc3	98	77.255	Amphiprion_ocellaris
ENSORLG00020005513	rnpc3	100	76.863	ENSAPEG00000008739	rnpc3	98	76.863	Amphiprion_percula
ENSORLG00020005513	rnpc3	100	75.969	ENSATEG00000021263	rnpc3	100	75.969	Anabas_testudineus
ENSORLG00020005513	rnpc3	89	54.667	ENSAPLG00000015605	RNPC3	99	54.667	Anas_platyrhynchos
ENSORLG00020005513	rnpc3	95	55.417	ENSACAG00000002029	RNPC3	96	54.786	Anolis_carolinensis
ENSORLG00020005513	rnpc3	97	54.016	ENSANAG00000019950	RNPC3	95	53.968	Aotus_nancymaae
ENSORLG00020005513	rnpc3	99	77.200	ENSACLG00000014702	rnpc3	99	77.062	Astatotilapia_calliptera
ENSORLG00020005513	rnpc3	100	64.648	ENSAMXG00000033372	rnpc3	100	64.453	Astyanax_mexicanus
ENSORLG00020005513	rnpc3	97	54.076	ENSBTAG00000019091	RNPC3	95	54.076	Bos_taurus
ENSORLG00020005513	rnpc3	97	54.251	ENSCJAG00000035686	RNPC3	95	55.668	Callithrix_jacchus
ENSORLG00020005513	rnpc3	97	52.539	ENSCAFG00000019972	RNPC3	95	54.234	Canis_familiaris
ENSORLG00020005513	rnpc3	97	52.539	ENSCAFG00020011300	RNPC3	95	54.234	Canis_lupus_dingo
ENSORLG00020005513	rnpc3	97	54.653	ENSCHIG00000020361	RNPC3	95	53.770	Capra_hircus
ENSORLG00020005513	rnpc3	97	55.040	ENSTSYG00000030256	RNPC3	95	55.040	Carlito_syrichta
ENSORLG00020005513	rnpc3	86	47.032	ENSCAPG00000013600	RNPC3	97	47.454	Cavia_aperea
ENSORLG00020005513	rnpc3	97	54.839	ENSCPOG00000031638	RNPC3	95	53.737	Cavia_porcellus
ENSORLG00020005513	rnpc3	97	53.815	ENSCCAG00000024301	RNPC3	95	53.815	Cebus_capucinus
ENSORLG00020005513	rnpc3	97	43.813	ENSCATG00000035930	-	52	48.971	Cercocebus_atys
ENSORLG00020005513	rnpc3	97	54.637	ENSCATG00000002086	RNPC3	95	54.637	Cercocebus_atys
ENSORLG00020005513	rnpc3	97	53.737	ENSCLAG00000005169	RNPC3	95	54.545	Chinchilla_lanigera
ENSORLG00020005513	rnpc3	97	54.637	ENSCSAG00000001519	RNPC3	95	54.637	Chlorocebus_sabaeus
ENSORLG00020005513	rnpc3	97	56.212	ENSCPBG00000028311	RNPC3	95	56.415	Chrysemys_picta_bellii
ENSORLG00020005513	rnpc3	95	36.268	ENSCSAVG00000002800	-	74	55.556	Ciona_savignyi
ENSORLG00020005513	rnpc3	97	54.234	ENSCANG00000031444	RNPC3	95	54.234	Colobus_angolensis_palliatus
ENSORLG00020005513	rnpc3	96	54.564	ENSCGRG00001019276	Rnpc3	95	53.659	Cricetulus_griseus_chok1gshd
ENSORLG00020005513	rnpc3	89	53.407	ENSCGRG00000000053	Rnpc3	99	51.982	Cricetulus_griseus_crigri
ENSORLG00020005513	rnpc3	98	76.074	ENSCSEG00000013475	rnpc3	97	76.074	Cynoglossus_semilaevis
ENSORLG00020005513	rnpc3	100	78.405	ENSCVAG00000002645	rnpc3	100	78.405	Cyprinodon_variegatus
ENSORLG00020005513	rnpc3	99	64.453	ENSDARG00000011247	rnpc3	99	65.039	Danio_rerio
ENSORLG00020005513	rnpc3	97	53.521	ENSDNOG00000044555	-	95	53.320	Dasypus_novemcinctus
ENSORLG00020005513	rnpc3	97	53.924	ENSDNOG00000047498	-	95	53.722	Dasypus_novemcinctus
ENSORLG00020005513	rnpc3	98	52.023	ENSDORG00000027343	Rnpc3	96	53.678	Dipodomys_ordii
ENSORLG00020005513	rnpc3	97	50.196	ENSEBUG00000002068	rnpc3	97	50.295	Eptatretus_burgeri
ENSORLG00020005513	rnpc3	97	54.637	ENSEASG00005015957	RNPC3	95	54.637	Equus_asinus_asinus
ENSORLG00020005513	rnpc3	97	54.637	ENSECAG00000021148	RNPC3	95	54.637	Equus_caballus
ENSORLG00020005513	rnpc3	99	65.143	ENSELUG00000002264	rnpc3	99	64.952	Esox_lucius
ENSORLG00020005513	rnpc3	97	52.632	ENSFCAG00000024312	RNPC3	95	54.234	Felis_catus
ENSORLG00020005513	rnpc3	89	55.778	ENSFALG00000002580	RNPC3	99	56.459	Ficedula_albicollis
ENSORLG00020005513	rnpc3	97	53.722	ENSFDAG00000019948	RNPC3	95	53.521	Fukomys_damarensis
ENSORLG00020005513	rnpc3	100	73.800	ENSFHEG00000020647	rnpc3	100	73.800	Fundulus_heteroclitus
ENSORLG00020005513	rnpc3	100	67.659	ENSGMOG00000019213	rnpc3	99	68.254	Gadus_morhua
ENSORLG00020005513	rnpc3	97	55.419	ENSGALG00000005162	RNPC3	88	55.533	Gallus_gallus
ENSORLG00020005513	rnpc3	100	76.667	ENSGAFG00000017236	rnpc3	100	76.667	Gambusia_affinis
ENSORLG00020005513	rnpc3	100	75.050	ENSGACG00000002048	rnpc3	98	75.644	Gasterosteus_aculeatus
ENSORLG00020005513	rnpc3	97	56.442	ENSGAGG00000008438	RNPC3	94	56.442	Gopherus_agassizii
ENSORLG00020005513	rnpc3	97	48.560	ENSGGOG00000026201	-	94	48.560	Gorilla_gorilla
ENSORLG00020005513	rnpc3	87	74.380	ENSHBUG00000015966	rnpc3	85	76.584	Haplochromis_burtoni
ENSORLG00020005513	rnpc3	97	51.815	ENSHGLG00000001708	RNPC3	95	53.012	Heterocephalus_glaber_female
ENSORLG00020005513	rnpc3	97	51.815	ENSHGLG00100003005	RNPC3	95	53.012	Heterocephalus_glaber_male
ENSORLG00020005513	rnpc3	99	73.611	ENSHCOG00000017135	rnpc3	100	73.611	Hippocampus_comes
ENSORLG00020005513	rnpc3	99	64.554	ENSIPUG00000002916	rnpc3	99	63.960	Ictalurus_punctatus
ENSORLG00020005513	rnpc3	97	54.125	ENSSTOG00000025020	RNPC3	95	54.125	Ictidomys_tridecemlineatus
ENSORLG00020005513	rnpc3	96	54.286	ENSJJAG00000010203	Rnpc3	96	54.049	Jaculus_jaculus
ENSORLG00020005513	rnpc3	99	78.000	ENSKMAG00000017358	rnpc3	99	76.000	Kryptolebias_marmoratus
ENSORLG00020005513	rnpc3	100	76.726	ENSLBEG00000024901	rnpc3	98	76.726	Labrus_bergylta
ENSORLG00020005513	rnpc3	99	57.738	ENSLACG00000005720	RNPC3	90	58.384	Latimeria_chalumnae
ENSORLG00020005513	rnpc3	98	62.626	ENSLOCG00000007986	rnpc3	98	61.972	Lepisosteus_oculatus
ENSORLG00020005513	rnpc3	97	55.847	ENSLAFG00000032342	RNPC3	95	54.545	Loxodonta_africana
ENSORLG00020005513	rnpc3	97	43.177	ENSMFAG00000002917	-	54	49.372	Macaca_fascicularis
ENSORLG00020005513	rnpc3	97	54.637	ENSMFAG00000002004	RNPC3	95	54.637	Macaca_fascicularis
ENSORLG00020005513	rnpc3	97	54.435	ENSMMUG00000018039	RNPC3	95	54.435	Macaca_mulatta
ENSORLG00020005513	rnpc3	79	51.923	ENSMMUG00000002098	-	85	51.923	Macaca_mulatta
ENSORLG00020005513	rnpc3	97	51.411	ENSMNEG00000033950	RNPC3	95	51.411	Macaca_nemestrina
ENSORLG00020005513	rnpc3	97	43.532	ENSMLEG00000034644	-	95	42.570	Mandrillus_leucophaeus
ENSORLG00020005513	rnpc3	97	54.637	ENSMLEG00000033628	RNPC3	95	54.637	Mandrillus_leucophaeus
ENSORLG00020005513	rnpc3	100	68.885	ENSMAMG00000007496	rnpc3	100	68.885	Mastacembelus_armatus
ENSORLG00020005513	rnpc3	99	75.775	ENSMZEG00005020233	rnpc3	99	75.634	Maylandia_zebra
ENSORLG00020005513	rnpc3	89	55.066	ENSMGAG00000006381	RNPC3	99	55.066	Meleagris_gallopavo
ENSORLG00020005513	rnpc3	97	55.172	ENSMAUG00000001358	Rnpc3	95	53.862	Mesocricetus_auratus
ENSORLG00020005513	rnpc3	97	54.343	ENSMICG00000029591	RNPC3	95	54.343	Microcebus_murinus
ENSORLG00020005513	rnpc3	97	55.645	ENSMOCG00000013423	Rnpc3	95	54.343	Microtus_ochrogaster
ENSORLG00020005513	rnpc3	100	70.259	ENSMMOG00000005309	rnpc3	100	71.856	Mola_mola
ENSORLG00020005513	rnpc3	97	54.918	ENSMODG00000002946	RNPC3	95	54.918	Monodelphis_domestica
ENSORLG00020005513	rnpc3	98	72.112	ENSMALG00000015471	rnpc3	99	72.112	Monopterus_albus
ENSORLG00020005513	rnpc3	97	54.819	MGP_CAROLIEiJ_G0025555	Rnpc3	97	53.521	Mus_caroli
ENSORLG00020005513	rnpc3	97	54.819	ENSMUSG00000027981	Rnpc3	99	52.137	Mus_musculus
ENSORLG00020005513	rnpc3	97	54.309	MGP_PahariEiJ_G0027001	Rnpc3	97	53.012	Mus_pahari
ENSORLG00020005513	rnpc3	97	54.618	MGP_SPRETEiJ_G0026505	Rnpc3	97	53.320	Mus_spretus
ENSORLG00020005513	rnpc3	97	52.953	ENSMPUG00000007349	RNPC3	95	54.675	Mustela_putorius_furo
ENSORLG00020005513	rnpc3	97	52.165	ENSMLUG00000028743	RNPC3	95	55.081	Myotis_lucifugus
ENSORLG00020005513	rnpc3	97	51.462	ENSNGAG00000010939	Rnpc3	96	54.016	Nannospalax_galili
ENSORLG00020005513	rnpc3	99	77.600	ENSNBRG00000012196	rnpc3	96	77.465	Neolamprologus_brichardi
ENSORLG00020005513	rnpc3	97	54.326	ENSNLEG00000012013	RNPC3	95	54.274	Nomascus_leucogenys
ENSORLG00020005513	rnpc3	97	55.578	ENSODEG00000007612	RNPC3	95	53.753	Octodon_degus
ENSORLG00020005513	rnpc3	99	77.647	ENSONIG00000004770	rnpc3	100	79.098	Oreochromis_niloticus
ENSORLG00020005513	rnpc3	91	55.579	ENSOANG00000008220	RNPC3	99	55.579	Ornithorhynchus_anatinus
ENSORLG00020005513	rnpc3	97	54.108	ENSOCUG00000004016	RNPC3	95	53.908	Oryctolagus_cuniculus
ENSORLG00020005513	rnpc3	100	98.000	ENSORLG00000005694	rnpc3	100	98.000	Oryzias_latipes
ENSORLG00020005513	rnpc3	100	98.400	ENSORLG00015002179	rnpc3	100	98.400	Oryzias_latipes_hsok
ENSORLG00020005513	rnpc3	100	92.800	ENSOMEG00000017737	rnpc3	100	92.800	Oryzias_melastigma
ENSORLG00020005513	rnpc3	97	55.131	ENSOGAG00000026182	RNPC3	95	55.131	Otolemur_garnettii
ENSORLG00020005513	rnpc3	97	54.653	ENSOARG00000018719	RNPC3	95	53.770	Ovis_aries
ENSORLG00020005513	rnpc3	97	54.059	ENSPPAG00000037459	RNPC3	95	54.059	Pan_paniscus
ENSORLG00020005513	rnpc3	97	49.284	ENSPPAG00000030278	-	97	48.880	Pan_paniscus
ENSORLG00020005513	rnpc3	97	52.539	ENSPPRG00000020246	RNPC3	95	54.234	Panthera_pardus
ENSORLG00020005513	rnpc3	97	54.234	ENSPTIG00000009887	RNPC3	97	54.234	Panthera_tigris_altaica
ENSORLG00020005513	rnpc3	97	48.156	ENSPTRG00000044227	-	97	48.163	Pan_troglodytes
ENSORLG00020005513	rnpc3	97	54.435	ENSPTRG00000033902	RNPC3	95	54.435	Pan_troglodytes
ENSORLG00020005513	rnpc3	97	44.711	ENSPANG00000029957	-	97	41.837	Papio_anubis
ENSORLG00020005513	rnpc3	97	54.747	ENSPANG00000012137	RNPC3	95	54.747	Papio_anubis
ENSORLG00020005513	rnpc3	99	64.047	ENSPKIG00000008828	rnpc3	99	63.922	Paramormyrops_kingsleyae
ENSORLG00020005513	rnpc3	68	54.908	ENSPSIG00000007396	RNPC3	99	55.521	Pelodiscus_sinensis
ENSORLG00020005513	rnpc3	99	64.822	ENSPMGG00000011742	rnpc3	99	63.241	Periophthalmus_magnuspinnatus
ENSORLG00020005513	rnpc3	89	53.947	ENSPEMG00000020112	Rnpc3	99	52.643	Peromyscus_maniculatus_bairdii
ENSORLG00020005513	rnpc3	97	43.691	ENSPMAG00000003778	rnpc3	97	47.379	Petromyzon_marinus
ENSORLG00020005513	rnpc3	97	55.328	ENSPCIG00000004415	-	95	55.328	Phascolarctos_cinereus
ENSORLG00020005513	rnpc3	100	78.585	ENSPFOG00000009895	rnpc3	100	78.585	Poecilia_formosa
ENSORLG00020005513	rnpc3	100	78.193	ENSPLAG00000012023	rnpc3	100	78.193	Poecilia_latipinna
ENSORLG00020005513	rnpc3	100	78.824	ENSPMEG00000003663	rnpc3	100	78.782	Poecilia_mexicana
ENSORLG00020005513	rnpc3	100	78.150	ENSPREG00000010206	rnpc3	100	78.543	Poecilia_reticulata
ENSORLG00020005513	rnpc3	81	48.260	ENSPPYG00000001102	RNPC3	94	50.120	Pongo_abelii
ENSORLG00020005513	rnpc3	99	77.000	ENSPNYG00000020603	rnpc3	99	76.861	Pundamilia_nyererei
ENSORLG00020005513	rnpc3	97	53.939	ENSRNOG00000017310	Rnpc3	95	53.707	Rattus_norvegicus
ENSORLG00020005513	rnpc3	97	50.099	ENSRBIG00000043897	RNPC3	95	50.099	Rhinopithecus_bieti
ENSORLG00020005513	rnpc3	97	54.637	ENSRROG00000032334	RNPC3	95	54.637	Rhinopithecus_roxellana
ENSORLG00020005513	rnpc3	97	54.343	ENSSBOG00000024473	RNPC3	95	54.343	Saimiri_boliviensis_boliviensis
ENSORLG00020005513	rnpc3	97	54.141	ENSSHAG00000011859	RNPC3	95	54.141	Sarcophilus_harrisii
ENSORLG00020005513	rnpc3	98	67.470	ENSSFOG00015013055	rnpc3	99	67.470	Scleropages_formosus
ENSORLG00020005513	rnpc3	100	73.010	ENSSMAG00000020346	rnpc3	100	74.757	Scophthalmus_maximus
ENSORLG00020005513	rnpc3	100	77.388	ENSSDUG00000006600	rnpc3	100	77.388	Seriola_dumerili
ENSORLG00020005513	rnpc3	100	77.778	ENSSLDG00000007979	rnpc3	100	77.778	Seriola_lalandi_dorsalis
ENSORLG00020005513	rnpc3	97	52.784	ENSSPUG00000003872	-	92	52.784	Sphenodon_punctatus
ENSORLG00020005513	rnpc3	97	56.275	ENSSPUG00000008539	-	95	56.275	Sphenodon_punctatus
ENSORLG00020005513	rnpc3	100	77.490	ENSSPAG00000005633	rnpc3	100	75.498	Stegastes_partitus
ENSORLG00020005513	rnpc3	97	53.137	ENSSSCG00000037254	RNPC3	95	54.767	Sus_scrofa
ENSORLG00020005513	rnpc3	89	55.679	ENSTGUG00000004795	-	99	56.152	Taeniopygia_guttata
ENSORLG00020005513	rnpc3	99	73.611	ENSTNIG00000018963	rnpc3	100	73.611	Tetraodon_nigroviridis
ENSORLG00020005513	rnpc3	97	54.435	ENSUMAG00000007775	RNPC3	97	54.435	Ursus_maritimus
ENSORLG00020005513	rnpc3	97	52.539	ENSVVUG00000000331	RNPC3	95	54.234	Vulpes_vulpes
ENSORLG00020005513	rnpc3	96	45.833	ENSXETG00000025027	rnpc3	96	45.090	Xenopus_tropicalis
ENSORLG00020005513	rnpc3	100	73.973	ENSXCOG00000005013	rnpc3	100	77.691	Xiphophorus_couchianus
ENSORLG00020005513	rnpc3	100	77.255	ENSXMAG00000006495	rnpc3	100	77.255	Xiphophorus_maculatus