EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020005540 (Gene tree)
Gene ID: -
Gene Symbol: cstf3
Alias: -
Full Name: cleavage stimulation factor%2C 3' pre-RNA%2C subunit 3
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 12134 bases
Position: chr3:21744858-21756991
Accession: ZDB-GENE-040426-1997
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020004687	Suf	PF05843.14	3e-84	1	1
ENSORLP00020024211	Suf	PF05843.14	3e-84	1	1
ENSORLP00020024228	Suf	PF05843.14	5e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020007556	-	2677	-	ENSORLP00020004687	714 (aa)	-	-
ENSORLT00020007510	-	2139	-	ENSORLP00020024228	712 (aa)	-	-
ENSORLT00020007528	-	2768	-	ENSORLP00020024211	714 (aa)	-	-

Gene Model

Click here to download ENSORLG00020005540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020005540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020005540	cstf3	100	90.934	ENSG00000176102	CSTF3	100	90.934	Homo_sapiens
ENSORLG00020005540	cstf3	100	96.089	ENSAPOG00000014054	cstf3	100	96.089	Acanthochromis_polyacanthus
ENSORLG00020005540	cstf3	99	90.973	ENSAMEG00000007187	CSTF3	98	90.973	Ailuropoda_melanoleuca
ENSORLG00020005540	cstf3	88	91.814	ENSACIG00000005539	cstf3	100	91.814	Amphilophus_citrinellus
ENSORLG00020005540	cstf3	100	96.089	ENSAOCG00000010930	cstf3	100	96.089	Amphiprion_ocellaris
ENSORLG00020005540	cstf3	100	96.089	ENSAPEG00000007903	cstf3	100	96.089	Amphiprion_percula
ENSORLG00020005540	cstf3	100	95.950	ENSATEG00000000190	cstf3	100	95.950	Anabas_testudineus
ENSORLG00020005540	cstf3	99	91.231	ENSAPLG00000007217	CSTF3	99	91.231	Anas_platyrhynchos
ENSORLG00020005540	cstf3	99	90.756	ENSACAG00000002823	CSTF3	99	90.756	Anolis_carolinensis
ENSORLG00020005540	cstf3	100	90.934	ENSANAG00000020699	CSTF3	100	90.934	Aotus_nancymaae
ENSORLG00020005540	cstf3	100	96.089	ENSACLG00000007820	cstf3	100	96.089	Astatotilapia_calliptera
ENSORLG00020005540	cstf3	100	90.237	ENSAMXG00000014198	cstf3	100	90.516	Astyanax_mexicanus
ENSORLG00020005540	cstf3	100	90.934	ENSBTAG00000008617	CSTF3	100	91.098	Bos_taurus
ENSORLG00020005540	cstf3	97	47.709	WBGene00006307	suf-1	99	47.709	Caenorhabditis_elegans
ENSORLG00020005540	cstf3	100	90.934	ENSCJAG00000005533	CSTF3	100	90.934	Callithrix_jacchus
ENSORLG00020005540	cstf3	100	90.934	ENSCAFG00000007264	CSTF3	100	90.934	Canis_familiaris
ENSORLG00020005540	cstf3	99	91.114	ENSCAFG00020002715	CSTF3	99	91.114	Canis_lupus_dingo
ENSORLG00020005540	cstf3	98	90.157	ENSCHIG00000016418	CSTF3	100	90.720	Capra_hircus
ENSORLG00020005540	cstf3	99	91.114	ENSTSYG00000000451	CSTF3	99	95.333	Carlito_syrichta
ENSORLG00020005540	cstf3	84	88.124	ENSCAPG00000010958	CSTF3	98	88.124	Cavia_aperea
ENSORLG00020005540	cstf3	100	91.074	ENSCPOG00000005545	CSTF3	100	91.074	Cavia_porcellus
ENSORLG00020005540	cstf3	100	90.934	ENSCCAG00000024790	CSTF3	96	95.333	Cebus_capucinus
ENSORLG00020005540	cstf3	100	90.934	ENSCATG00000007080	CSTF3	100	90.934	Cercocebus_atys
ENSORLG00020005540	cstf3	100	90.934	ENSCLAG00000016179	CSTF3	100	90.934	Chinchilla_lanigera
ENSORLG00020005540	cstf3	78	96.604	ENSCHOG00000002497	CSTF3	79	96.604	Choloepus_hoffmanni
ENSORLG00020005540	cstf3	100	90.947	ENSCPBG00000006753	CSTF3	100	90.947	Chrysemys_picta_bellii
ENSORLG00020005540	cstf3	99	61.602	ENSCING00000006401	-	98	61.878	Ciona_intestinalis
ENSORLG00020005540	cstf3	99	61.885	ENSCSAVG00000004851	-	100	61.885	Ciona_savignyi
ENSORLG00020005540	cstf3	100	90.934	ENSCANG00000035468	CSTF3	100	90.934	Colobus_angolensis_palliatus
ENSORLG00020005540	cstf3	100	90.656	ENSCGRG00001014773	Cstf3	100	90.656	Cricetulus_griseus_chok1gshd
ENSORLG00020005540	cstf3	100	90.656	ENSCGRG00000004142	Cstf3	100	90.656	Cricetulus_griseus_crigri
ENSORLG00020005540	cstf3	100	95.524	ENSCSEG00000014283	cstf3	100	95.524	Cynoglossus_semilaevis
ENSORLG00020005540	cstf3	100	95.251	ENSCVAG00000019739	cstf3	100	95.251	Cyprinodon_variegatus
ENSORLG00020005540	cstf3	100	92.179	ENSDARG00000018904	cstf3	100	92.179	Danio_rerio
ENSORLG00020005540	cstf3	99	90.973	ENSDNOG00000007366	CSTF3	99	90.973	Dasypus_novemcinctus
ENSORLG00020005540	cstf3	99	84.181	ENSDORG00000005898	Cstf3	100	83.217	Dipodomys_ordii
ENSORLG00020005540	cstf3	98	56.111	FBgn0003559	su(f)	98	56.111	Drosophila_melanogaster
ENSORLG00020005540	cstf3	90	85.670	ENSETEG00000017097	CSTF3	90	85.670	Echinops_telfairi
ENSORLG00020005540	cstf3	84	74.210	ENSEBUG00000015459	cstf3	96	74.210	Eptatretus_burgeri
ENSORLG00020005540	cstf3	98	91.429	ENSEASG00005019884	CSTF3	97	95.333	Equus_asinus_asinus
ENSORLG00020005540	cstf3	98	91.429	ENSECAG00000023338	CSTF3	97	95.333	Equus_caballus
ENSORLG00020005540	cstf3	100	86.053	ENSEEUG00000015167	CSTF3	100	86.053	Erinaceus_europaeus
ENSORLG00020005540	cstf3	100	93.715	ENSELUG00000023393	cstf3	100	93.715	Esox_lucius
ENSORLG00020005540	cstf3	100	90.795	ENSFCAG00000030711	CSTF3	100	90.795	Felis_catus
ENSORLG00020005540	cstf3	93	93.072	ENSFALG00000010764	CSTF3	100	90.323	Ficedula_albicollis
ENSORLG00020005540	cstf3	100	90.795	ENSFDAG00000012082	CSTF3	100	90.795	Fukomys_damarensis
ENSORLG00020005540	cstf3	100	95.670	ENSFHEG00000020623	cstf3	100	95.670	Fundulus_heteroclitus
ENSORLG00020005540	cstf3	100	92.758	ENSGMOG00000012275	cstf3	100	92.758	Gadus_morhua
ENSORLG00020005540	cstf3	100	90.251	ENSGALG00000011685	CSTF3	100	90.251	Gallus_gallus
ENSORLG00020005540	cstf3	100	95.391	ENSGAFG00000002181	cstf3	100	95.391	Gambusia_affinis
ENSORLG00020005540	cstf3	100	94.693	ENSGACG00000015997	cstf3	100	94.693	Gasterosteus_aculeatus
ENSORLG00020005540	cstf3	100	90.947	ENSGAGG00000006200	CSTF3	100	90.947	Gopherus_agassizii
ENSORLG00020005540	cstf3	99	85.734	ENSGGOG00000026591	CSTF3	96	90.869	Gorilla_gorilla
ENSORLG00020005540	cstf3	100	95.950	ENSHBUG00000016656	cstf3	100	95.950	Haplochromis_burtoni
ENSORLG00020005540	cstf3	100	90.934	ENSHGLG00000017834	CSTF3	100	90.934	Heterocephalus_glaber_female
ENSORLG00020005540	cstf3	100	90.934	ENSHGLG00100018042	CSTF3	100	90.934	Heterocephalus_glaber_male
ENSORLG00020005540	cstf3	99	94.302	ENSHCOG00000015218	cstf3	99	93.548	Hippocampus_comes
ENSORLG00020005540	cstf3	100	91.760	ENSIPUG00000013170	CSTF3	100	91.760	Ictalurus_punctatus
ENSORLG00020005540	cstf3	100	90.934	ENSSTOG00000013306	CSTF3	100	90.934	Ictidomys_tridecemlineatus
ENSORLG00020005540	cstf3	99	80.309	ENSJJAG00000018430	Cstf3	99	80.309	Jaculus_jaculus
ENSORLG00020005540	cstf3	100	94.972	ENSKMAG00000010916	cstf3	100	94.972	Kryptolebias_marmoratus
ENSORLG00020005540	cstf3	100	94.832	ENSLBEG00000002306	cstf3	100	94.832	Labrus_bergylta
ENSORLG00020005540	cstf3	100	89.106	ENSLACG00000017296	CSTF3	100	89.106	Latimeria_chalumnae
ENSORLG00020005540	cstf3	100	92.748	ENSLOCG00000004415	cstf3	100	92.748	Lepisosteus_oculatus
ENSORLG00020005540	cstf3	100	90.795	ENSLAFG00000008712	CSTF3	100	90.795	Loxodonta_africana
ENSORLG00020005540	cstf3	100	90.934	ENSMFAG00000029516	CSTF3	100	90.934	Macaca_fascicularis
ENSORLG00020005540	cstf3	100	90.934	ENSMMUG00000002542	CSTF3	100	90.934	Macaca_mulatta
ENSORLG00020005540	cstf3	100	90.934	ENSMNEG00000021807	CSTF3	100	90.934	Macaca_nemestrina
ENSORLG00020005540	cstf3	100	90.934	ENSMLEG00000039594	CSTF3	98	93.792	Mandrillus_leucophaeus
ENSORLG00020005540	cstf3	100	95.670	ENSMAMG00000020423	cstf3	100	95.670	Mastacembelus_armatus
ENSORLG00020005540	cstf3	100	96.089	ENSMZEG00005012082	cstf3	100	96.089	Maylandia_zebra
ENSORLG00020005540	cstf3	99	90.743	ENSMGAG00000001383	CSTF3	99	90.743	Meleagris_gallopavo
ENSORLG00020005540	cstf3	100	90.516	ENSMAUG00000002487	Cstf3	100	90.516	Mesocricetus_auratus
ENSORLG00020005540	cstf3	100	90.656	ENSMICG00000004784	CSTF3	100	90.656	Microcebus_murinus
ENSORLG00020005540	cstf3	100	90.656	ENSMOCG00000017583	Cstf3	100	90.656	Microtus_ochrogaster
ENSORLG00020005540	cstf3	99	96.170	ENSMMOG00000016026	cstf3	94	96.170	Mola_mola
ENSORLG00020005540	cstf3	100	80.335	ENSMODG00000025205	-	100	80.335	Monodelphis_domestica
ENSORLG00020005540	cstf3	100	91.353	ENSMODG00000009745	-	100	91.353	Monodelphis_domestica
ENSORLG00020005540	cstf3	100	95.670	ENSMALG00000012050	cstf3	100	95.670	Monopterus_albus
ENSORLG00020005540	cstf3	100	90.656	MGP_CAROLIEiJ_G0024026	Cstf3	100	90.656	Mus_caroli
ENSORLG00020005540	cstf3	100	90.656	ENSMUSG00000027176	Cstf3	100	90.656	Mus_musculus
ENSORLG00020005540	cstf3	100	90.656	MGP_PahariEiJ_G0025464	Cstf3	100	90.656	Mus_pahari
ENSORLG00020005540	cstf3	100	90.656	MGP_SPRETEiJ_G0024939	Cstf3	100	90.656	Mus_spretus
ENSORLG00020005540	cstf3	100	90.795	ENSMPUG00000011457	CSTF3	100	90.795	Mustela_putorius_furo
ENSORLG00020005540	cstf3	100	88.145	ENSMLUG00000026022	-	100	88.145	Myotis_lucifugus
ENSORLG00020005540	cstf3	99	90.858	ENSMLUG00000003073	-	99	90.858	Myotis_lucifugus
ENSORLG00020005540	cstf3	100	90.795	ENSNGAG00000010677	Cstf3	100	90.795	Nannospalax_galili
ENSORLG00020005540	cstf3	88	96.629	ENSNBRG00000007345	cstf3	100	96.629	Neolamprologus_brichardi
ENSORLG00020005540	cstf3	100	90.934	ENSNLEG00000017901	CSTF3	100	90.934	Nomascus_leucogenys
ENSORLG00020005540	cstf3	73	90.440	ENSMEUG00000005640	-	100	90.440	Notamacropus_eugenii
ENSORLG00020005540	cstf3	67	90.667	ENSOPRG00000000199	-	67	90.667	Ochotona_princeps
ENSORLG00020005540	cstf3	100	90.656	ENSODEG00000016737	-	100	90.656	Octodon_degus
ENSORLG00020005540	cstf3	89	79.088	ENSODEG00000006311	-	97	79.088	Octodon_degus
ENSORLG00020005540	cstf3	100	96.089	ENSONIG00000005563	cstf3	100	96.089	Oreochromis_niloticus
ENSORLG00020005540	cstf3	90	90.000	ENSOANG00000015140	CSTF3	100	90.000	Ornithorhynchus_anatinus
ENSORLG00020005540	cstf3	100	90.656	ENSOCUG00000015417	CSTF3	100	90.656	Oryctolagus_cuniculus
ENSORLG00020005540	cstf3	100	99.860	ENSORLG00000009762	cstf3	100	99.860	Oryzias_latipes
ENSORLG00020005540	cstf3	100	99.860	ENSORLG00015003551	cstf3	100	99.860	Oryzias_latipes_hsok
ENSORLG00020005540	cstf3	100	98.179	ENSOMEG00000003848	cstf3	100	98.179	Oryzias_melastigma
ENSORLG00020005540	cstf3	100	90.556	ENSOGAG00000010229	CSTF3	100	90.556	Otolemur_garnettii
ENSORLG00020005540	cstf3	90	90.824	ENSOARG00000017271	CSTF3	99	90.824	Ovis_aries
ENSORLG00020005540	cstf3	99	87.994	ENSPPAG00000027358	CSTF3	99	87.994	Pan_paniscus
ENSORLG00020005540	cstf3	100	90.795	ENSPPRG00000016852	CSTF3	100	90.795	Panthera_pardus
ENSORLG00020005540	cstf3	100	90.795	ENSPTIG00000008716	CSTF3	100	90.795	Panthera_tigris_altaica
ENSORLG00020005540	cstf3	100	90.934	ENSPTRG00000003485	CSTF3	100	90.934	Pan_troglodytes
ENSORLG00020005540	cstf3	100	90.934	ENSPANG00000013722	CSTF3	98	93.792	Papio_anubis
ENSORLG00020005540	cstf3	100	92.318	ENSPKIG00000023648	cstf3	100	92.318	Paramormyrops_kingsleyae
ENSORLG00020005540	cstf3	100	91.086	ENSPSIG00000009173	CSTF3	100	91.086	Pelodiscus_sinensis
ENSORLG00020005540	cstf3	76	95.978	ENSPMGG00000000164	cstf3	99	95.978	Periophthalmus_magnuspinnatus
ENSORLG00020005540	cstf3	100	90.656	ENSPEMG00000011481	Cstf3	100	90.656	Peromyscus_maniculatus_bairdii
ENSORLG00020005540	cstf3	99	79.096	ENSPMAG00000007282	cstf3	98	79.408	Petromyzon_marinus
ENSORLG00020005540	cstf3	99	89.831	ENSPCIG00000026406	-	100	91.360	Phascolarctos_cinereus
ENSORLG00020005540	cstf3	100	76.602	ENSPCIG00000030419	-	90	76.880	Phascolarctos_cinereus
ENSORLG00020005540	cstf3	100	95.391	ENSPFOG00000017239	cstf3	100	95.391	Poecilia_formosa
ENSORLG00020005540	cstf3	100	95.531	ENSPLAG00000009456	cstf3	100	95.531	Poecilia_latipinna
ENSORLG00020005540	cstf3	100	95.391	ENSPMEG00000010320	cstf3	100	95.391	Poecilia_mexicana
ENSORLG00020005540	cstf3	100	95.251	ENSPREG00000013549	cstf3	100	95.251	Poecilia_reticulata
ENSORLG00020005540	cstf3	100	90.934	ENSPPYG00000003375	CSTF3	100	90.934	Pongo_abelii
ENSORLG00020005540	cstf3	71	94.425	ENSPCAG00000008025	-	71	94.425	Procavia_capensis
ENSORLG00020005540	cstf3	100	85.774	ENSPCOG00000014417	CSTF3	100	85.774	Propithecus_coquereli
ENSORLG00020005540	cstf3	100	85.635	ENSPVAG00000002350	CSTF3	100	85.635	Pteropus_vampyrus
ENSORLG00020005540	cstf3	100	95.950	ENSPNYG00000018259	cstf3	100	95.950	Pundamilia_nyererei
ENSORLG00020005540	cstf3	100	92.179	ENSPNAG00000020182	cstf3	100	92.179	Pygocentrus_nattereri
ENSORLG00020005540	cstf3	88	90.080	ENSRNOG00000012089	Cstf3	100	90.080	Rattus_norvegicus
ENSORLG00020005540	cstf3	99	90.141	ENSRBIG00000044258	CSTF3	100	90.720	Rhinopithecus_bieti
ENSORLG00020005540	cstf3	100	90.934	ENSRROG00000043450	CSTF3	100	90.934	Rhinopithecus_roxellana
ENSORLG00020005540	cstf3	100	90.934	ENSSBOG00000024764	CSTF3	98	95.333	Saimiri_boliviensis_boliviensis
ENSORLG00020005540	cstf3	100	81.311	ENSSHAG00000003135	-	99	81.311	Sarcophilus_harrisii
ENSORLG00020005540	cstf3	99	91.408	ENSSHAG00000018128	-	99	91.408	Sarcophilus_harrisii
ENSORLG00020005540	cstf3	100	93.156	ENSSFOG00015022133	cstf3	100	93.156	Scleropages_formosus
ENSORLG00020005540	cstf3	100	94.693	ENSSMAG00000002197	cstf3	100	94.693	Scophthalmus_maximus
ENSORLG00020005540	cstf3	100	96.229	ENSSDUG00000020426	cstf3	100	96.229	Seriola_dumerili
ENSORLG00020005540	cstf3	100	96.369	ENSSLDG00000025649	cstf3	100	96.662	Seriola_lalandi_dorsalis
ENSORLG00020005540	cstf3	100	90.795	ENSSARG00000000391	CSTF3	100	90.795	Sorex_araneus
ENSORLG00020005540	cstf3	96	90.883	ENSSPUG00000010546	CSTF3	100	90.883	Sphenodon_punctatus
ENSORLG00020005540	cstf3	100	95.950	ENSSPAG00000004958	cstf3	100	95.950	Stegastes_partitus
ENSORLG00020005540	cstf3	99	90.769	ENSSSCG00000040954	CSTF3	99	90.769	Sus_scrofa
ENSORLG00020005540	cstf3	99	91.372	ENSTGUG00000005010	CSTF3	99	91.372	Taeniopygia_guttata
ENSORLG00020005540	cstf3	100	93.855	ENSTRUG00000004959	cstf3	100	93.855	Takifugu_rubripes
ENSORLG00020005540	cstf3	99	95.319	ENSTNIG00000013811	cstf3	98	95.319	Tetraodon_nigroviridis
ENSORLG00020005540	cstf3	90	88.162	ENSTBEG00000001544	CSTF3	90	88.162	Tupaia_belangeri
ENSORLG00020005540	cstf3	100	88.285	ENSTTRG00000016366	CSTF3	100	88.285	Tursiops_truncatus
ENSORLG00020005540	cstf3	99	90.973	ENSUMAG00000018971	CSTF3	100	90.560	Ursus_maritimus
ENSORLG00020005540	cstf3	100	90.795	ENSVPAG00000007800	CSTF3	100	90.795	Vicugna_pacos
ENSORLG00020005540	cstf3	99	91.114	ENSVVUG00000014938	CSTF3	100	90.720	Vulpes_vulpes
ENSORLG00020005540	cstf3	88	74.531	ENSXETG00000021399	cstf3	100	75.890	Xenopus_tropicalis
ENSORLG00020005540	cstf3	66	41.250	ENSXETG00000017946	-	99	41.250	Xenopus_tropicalis
ENSORLG00020005540	cstf3	88	95.506	ENSXCOG00000011741	cstf3	100	95.506	Xiphophorus_couchianus
ENSORLG00020005540	cstf3	100	95.810	ENSXMAG00000009545	cstf3	100	95.810	Xiphophorus_maculatus