EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020005559 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 20820 bases
Position: chr17:17247090-17267909
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020004588	XRN_N	PF03159.18	3.3e-96	1	1
ENSORLP00020024193	XRN_N	PF03159.18	3.4e-96	1	1
ENSORLP00020004695	XRN_N	PF03159.18	3.5e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020007708	-	4899	-	ENSORLP00020004588	1632 (aa)	-	-
ENSORLT00020007538	-	5382	-	ENSORLP00020004695	1704 (aa)	-	-
ENSORLT00020007594	-	5337	-	ENSORLP00020024193	1689 (aa)	-	-

Gene Model

Click here to download ENSORLG00020005559's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020005559's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020005559	xrn1	100	61.316	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSORLG00020005559	xrn1	94	86.546	ENSAPOG00000000622	xrn1	98	87.039	Acanthochromis_polyacanthus
ENSORLG00020005559	xrn1	93	72.284	ENSAMEG00000012538	XRN1	94	72.298	Ailuropoda_melanoleuca
ENSORLG00020005559	xrn1	94	86.967	ENSACIG00000001057	xrn1	98	86.967	Amphilophus_citrinellus
ENSORLG00020005559	xrn1	100	79.907	ENSAOCG00000014097	xrn1	100	79.849	Amphiprion_ocellaris
ENSORLG00020005559	xrn1	100	81.559	ENSAPEG00000006620	xrn1	100	82.083	Amphiprion_percula
ENSORLG00020005559	xrn1	98	82.459	ENSATEG00000009752	xrn1	99	82.459	Anabas_testudineus
ENSORLG00020005559	xrn1	97	70.687	ENSAPLG00000004905	XRN1	95	71.027	Anas_platyrhynchos
ENSORLG00020005559	xrn1	100	60.278	ENSACAG00000004985	XRN1	100	70.675	Anolis_carolinensis
ENSORLG00020005559	xrn1	100	61.778	ENSANAG00000029013	XRN1	99	74.074	Aotus_nancymaae
ENSORLG00020005559	xrn1	100	82.350	ENSACLG00000004806	xrn1	99	82.350	Astatotilapia_calliptera
ENSORLG00020005559	xrn1	100	68.586	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSORLG00020005559	xrn1	100	61.334	ENSBTAG00000011524	XRN1	100	61.183	Bos_taurus
ENSORLG00020005559	xrn1	73	38.859	WBGene00012730	xrn-1	89	36.644	Caenorhabditis_elegans
ENSORLG00020005559	xrn1	100	61.185	ENSCJAG00000001872	XRN1	100	61.477	Callithrix_jacchus
ENSORLG00020005559	xrn1	98	72.632	ENSCAFG00000007783	XRN1	94	72.793	Canis_familiaris
ENSORLG00020005559	xrn1	98	72.632	ENSCAFG00020009120	XRN1	99	76.935	Canis_lupus_dingo
ENSORLG00020005559	xrn1	97	72.378	ENSCHIG00000019192	XRN1	94	71.952	Capra_hircus
ENSORLG00020005559	xrn1	100	61.463	ENSTSYG00000002705	XRN1	100	61.446	Carlito_syrichta
ENSORLG00020005559	xrn1	57	62.829	ENSCAPG00000004604	-	99	63.366	Cavia_aperea
ENSORLG00020005559	xrn1	100	61.543	ENSCCAG00000034800	XRN1	99	79.206	Cebus_capucinus
ENSORLG00020005559	xrn1	100	61.316	ENSCATG00000041794	XRN1	100	61.102	Cercocebus_atys
ENSORLG00020005559	xrn1	97	72.392	ENSCLAG00000001451	XRN1	99	79.206	Chinchilla_lanigera
ENSORLG00020005559	xrn1	100	61.508	ENSCSAG00000011265	XRN1	100	60.742	Chlorocebus_sabaeus
ENSORLG00020005559	xrn1	53	94.805	ENSCHOG00000013961	-	54	95.833	Choloepus_hoffmanni
ENSORLG00020005559	xrn1	72	51.626	ENSCSAVG00000008584	-	93	51.626	Ciona_savignyi
ENSORLG00020005559	xrn1	100	61.300	ENSCANG00000037495	XRN1	99	79.206	Colobus_angolensis_palliatus
ENSORLG00020005559	xrn1	100	60.889	ENSCGRG00001019411	Xrn1	99	79.206	Cricetulus_griseus_chok1gshd
ENSORLG00020005559	xrn1	100	60.889	ENSCGRG00000012464	Xrn1	99	79.206	Cricetulus_griseus_crigri
ENSORLG00020005559	xrn1	100	69.306	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSORLG00020005559	xrn1	69	86.007	ENSCVAG00000013089	xrn1	99	86.007	Cyprinodon_variegatus
ENSORLG00020005559	xrn1	100	69.240	ENSDARG00000091652	xrn1	98	82.068	Danio_rerio
ENSORLG00020005559	xrn1	100	61.287	ENSDORG00000013833	Xrn1	100	61.277	Dipodomys_ordii
ENSORLG00020005559	xrn1	76	40.030	FBgn0020261	pcm	82	39.357	Drosophila_melanogaster
ENSORLG00020005559	xrn1	86	66.667	ENSETEG00000003978	XRN1	88	67.769	Echinops_telfairi
ENSORLG00020005559	xrn1	93	72.400	ENSEASG00005002687	XRN1	99	79.365	Equus_asinus_asinus
ENSORLG00020005559	xrn1	95	62.737	ENSECAG00000008301	XRN1	100	60.985	Equus_caballus
ENSORLG00020005559	xrn1	83	81.818	ENSEEUG00000011323	XRN1	92	66.244	Erinaceus_europaeus
ENSORLG00020005559	xrn1	100	71.347	ENSELUG00000000169	xrn1	100	71.347	Esox_lucius
ENSORLG00020005559	xrn1	100	59.004	ENSFCAG00000027589	XRN1	99	80.044	Felis_catus
ENSORLG00020005559	xrn1	98	71.306	ENSFALG00000007021	XRN1	94	71.306	Ficedula_albicollis
ENSORLG00020005559	xrn1	97	71.990	ENSFDAG00000020494	XRN1	99	79.048	Fukomys_damarensis
ENSORLG00020005559	xrn1	90	74.877	ENSGMOG00000006396	xrn1	88	75.123	Gadus_morhua
ENSORLG00020005559	xrn1	99	71.873	ENSGALG00000002706	XRN1	95	71.540	Gallus_gallus
ENSORLG00020005559	xrn1	100	74.391	ENSGACG00000014328	xrn1	95	84.054	Gasterosteus_aculeatus
ENSORLG00020005559	xrn1	93	71.008	ENSGAGG00000017535	XRN1	95	71.008	Gopherus_agassizii
ENSORLG00020005559	xrn1	100	61.433	ENSGGOG00000008047	XRN1	100	61.219	Gorilla_gorilla
ENSORLG00020005559	xrn1	100	79.196	ENSHBUG00000005908	xrn1	95	84.110	Haplochromis_burtoni
ENSORLG00020005559	xrn1	100	61.456	ENSHGLG00000014476	XRN1	99	79.206	Heterocephalus_glaber_female
ENSORLG00020005559	xrn1	100	61.456	ENSHGLG00100015130	XRN1	99	79.206	Heterocephalus_glaber_male
ENSORLG00020005559	xrn1	95	82.108	ENSHCOG00000014062	xrn1	99	82.108	Hippocampus_comes
ENSORLG00020005559	xrn1	100	69.370	ENSIPUG00000015229	xrn1	100	69.100	Ictalurus_punctatus
ENSORLG00020005559	xrn1	97	72.400	ENSSTOG00000013552	XRN1	99	79.206	Ictidomys_tridecemlineatus
ENSORLG00020005559	xrn1	96	71.849	ENSJJAG00000010863	Xrn1	99	78.512	Jaculus_jaculus
ENSORLG00020005559	xrn1	100	77.600	ENSKMAG00000021356	xrn1	95	87.527	Kryptolebias_marmoratus
ENSORLG00020005559	xrn1	100	76.505	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSORLG00020005559	xrn1	99	71.665	ENSLACG00000009020	XRN1	95	71.665	Latimeria_chalumnae
ENSORLG00020005559	xrn1	100	73.095	ENSLOCG00000007944	xrn1	98	73.676	Lepisosteus_oculatus
ENSORLG00020005559	xrn1	64	73.510	ENSLAFG00000015426	XRN1	99	73.876	Loxodonta_africana
ENSORLG00020005559	xrn1	100	61.357	ENSMFAG00000032599	XRN1	100	61.102	Macaca_fascicularis
ENSORLG00020005559	xrn1	100	61.357	ENSMMUG00000014038	XRN1	100	61.102	Macaca_mulatta
ENSORLG00020005559	xrn1	100	61.348	ENSMNEG00000034217	XRN1	100	61.073	Macaca_nemestrina
ENSORLG00020005559	xrn1	95	85.000	ENSMAMG00000013219	xrn1	99	85.000	Mastacembelus_armatus
ENSORLG00020005559	xrn1	100	82.291	ENSMZEG00005015099	xrn1	99	82.291	Maylandia_zebra
ENSORLG00020005559	xrn1	99	60.835	ENSMGAG00000006333	XRN1	94	70.192	Meleagris_gallopavo
ENSORLG00020005559	xrn1	100	61.756	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSORLG00020005559	xrn1	59	78.831	ENSMOCG00000008665	Xrn1	99	79.206	Microtus_ochrogaster
ENSORLG00020005559	xrn1	100	60.603	ENSMODG00000021236	XRN1	100	60.293	Monodelphis_domestica
ENSORLG00020005559	xrn1	100	75.335	ENSMALG00000004098	xrn1	100	75.759	Monopterus_albus
ENSORLG00020005559	xrn1	96	78.650	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSORLG00020005559	xrn1	95	72.414	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSORLG00020005559	xrn1	97	72.552	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSORLG00020005559	xrn1	100	60.751	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSORLG00020005559	xrn1	100	61.203	ENSMPUG00000012040	XRN1	100	61.212	Mustela_putorius_furo
ENSORLG00020005559	xrn1	100	61.029	ENSMLUG00000016885	XRN1	94	72.596	Myotis_lucifugus
ENSORLG00020005559	xrn1	59	74.762	ENSNGAG00000023964	Xrn1	99	75.238	Nannospalax_galili
ENSORLG00020005559	xrn1	100	61.070	ENSNLEG00000004726	XRN1	100	60.988	Nomascus_leucogenys
ENSORLG00020005559	xrn1	66	96.907	ENSMEUG00000014473	-	67	97.087	Notamacropus_eugenii
ENSORLG00020005559	xrn1	73	67.943	ENSOPRG00000007337	-	71	68.740	Ochotona_princeps
ENSORLG00020005559	xrn1	100	79.464	ENSONIG00000016673	xrn1	99	84.631	Oreochromis_niloticus
ENSORLG00020005559	xrn1	90	68.504	ENSOANG00000006735	XRN1	94	69.176	Ornithorhynchus_anatinus
ENSORLG00020005559	xrn1	98	73.136	ENSOCUG00000001861	XRN1	94	73.473	Oryctolagus_cuniculus
ENSORLG00020005559	xrn1	100	99.171	ENSORLG00000013005	xrn1	98	99.171	Oryzias_latipes
ENSORLG00020005559	xrn1	100	99.053	ENSORLG00015022523	xrn1	100	99.053	Oryzias_latipes_hsok
ENSORLG00020005559	xrn1	100	93.550	ENSOMEG00000015397	xrn1	100	94.910	Oryzias_melastigma
ENSORLG00020005559	xrn1	100	59.322	ENSOGAG00000000170	XRN1	100	59.088	Otolemur_garnettii
ENSORLG00020005559	xrn1	97	72.458	ENSOARG00000006343	XRN1	94	72.032	Ovis_aries
ENSORLG00020005559	xrn1	100	61.477	ENSPPAG00000010180	XRN1	100	61.399	Pan_paniscus
ENSORLG00020005559	xrn1	100	62.384	ENSPPRG00000007125	XRN1	100	62.204	Panthera_pardus
ENSORLG00020005559	xrn1	100	62.326	ENSPTIG00000021081	XRN1	100	62.204	Panthera_tigris_altaica
ENSORLG00020005559	xrn1	100	61.477	ENSPTRG00000015482	XRN1	100	61.399	Pan_troglodytes
ENSORLG00020005559	xrn1	100	61.300	ENSPANG00000010638	XRN1	100	61.045	Papio_anubis
ENSORLG00020005559	xrn1	99	70.726	ENSPSIG00000018050	XRN1	95	71.059	Pelodiscus_sinensis
ENSORLG00020005559	xrn1	59	87.781	ENSPMGG00000002648	xrn1	99	87.781	Periophthalmus_magnuspinnatus
ENSORLG00020005559	xrn1	59	78.989	ENSPEMG00000020610	Xrn1	99	79.365	Peromyscus_maniculatus_bairdii
ENSORLG00020005559	xrn1	65	52.445	ENSPMAG00000002975	xrn1	99	50.380	Petromyzon_marinus
ENSORLG00020005559	xrn1	99	71.667	ENSPCIG00000028735	XRN1	99	78.537	Phascolarctos_cinereus
ENSORLG00020005559	xrn1	90	82.048	ENSPFOG00000013932	xrn1	99	82.566	Poecilia_formosa
ENSORLG00020005559	xrn1	90	82.510	ENSPLAG00000021653	xrn1	99	82.575	Poecilia_latipinna
ENSORLG00020005559	xrn1	88	82.724	ENSPMEG00000003076	xrn1	95	83.056	Poecilia_mexicana
ENSORLG00020005559	xrn1	100	79.849	ENSPREG00000021147	xrn1	100	80.547	Poecilia_reticulata
ENSORLG00020005559	xrn1	100	60.970	ENSPPYG00000014172	XRN1	100	60.700	Pongo_abelii
ENSORLG00020005559	xrn1	86	68.066	ENSPCAG00000005638	XRN1	92	67.984	Procavia_capensis
ENSORLG00020005559	xrn1	100	61.818	ENSPCOG00000013089	XRN1	99	79.048	Propithecus_coquereli
ENSORLG00020005559	xrn1	91	71.046	ENSPVAG00000016265	XRN1	82	85.549	Pteropus_vampyrus
ENSORLG00020005559	xrn1	100	80.538	ENSPNYG00000010570	xrn1	99	80.538	Pundamilia_nyererei
ENSORLG00020005559	xrn1	100	68.206	ENSPNAG00000023531	xrn1	100	68.073	Pygocentrus_nattereri
ENSORLG00020005559	xrn1	97	72.218	ENSRNOG00000042951	Xrn1	94	72.320	Rattus_norvegicus
ENSORLG00020005559	xrn1	96	62.329	ENSRBIG00000041227	XRN1	100	60.842	Rhinopithecus_bieti
ENSORLG00020005559	xrn1	72	53.261	YGL173C	XRN1	72	53.261	Saccharomyces_cerevisiae
ENSORLG00020005559	xrn1	100	62.010	ENSSBOG00000029561	XRN1	100	61.889	Saimiri_boliviensis_boliviensis
ENSORLG00020005559	xrn1	99	60.860	ENSSHAG00000016207	XRN1	94	70.897	Sarcophilus_harrisii
ENSORLG00020005559	xrn1	100	67.347	ENSSFOG00015024211	xrn1	100	67.525	Scleropages_formosus
ENSORLG00020005559	xrn1	100	78.625	ENSSMAG00000016534	xrn1	100	78.798	Scophthalmus_maximus
ENSORLG00020005559	xrn1	94	86.803	ENSSDUG00000010306	xrn1	98	86.803	Seriola_dumerili
ENSORLG00020005559	xrn1	98	85.502	ENSSLDG00000021543	xrn1	100	85.502	Seriola_lalandi_dorsalis
ENSORLG00020005559	xrn1	63	68.454	ENSSARG00000007741	-	75	68.454	Sorex_araneus
ENSORLG00020005559	xrn1	97	72.625	ENSTGUG00000008498	XRN1	94	73.027	Taeniopygia_guttata
ENSORLG00020005559	xrn1	100	72.711	ENSTRUG00000004895	xrn1	96	85.412	Takifugu_rubripes
ENSORLG00020005559	xrn1	100	70.517	ENSTNIG00000017615	xrn1	100	70.704	Tetraodon_nigroviridis
ENSORLG00020005559	xrn1	80	85.215	ENSTBEG00000003256	XRN1	77	84.777	Tupaia_belangeri
ENSORLG00020005559	xrn1	96	63.722	ENSTTRG00000012914	XRN1	100	57.797	Tursiops_truncatus
ENSORLG00020005559	xrn1	96	61.341	ENSUAMG00000001608	XRN1	99	75.873	Ursus_americanus
ENSORLG00020005559	xrn1	93	72.698	ENSUMAG00000013625	XRN1	94	72.713	Ursus_maritimus
ENSORLG00020005559	xrn1	100	59.199	ENSVPAG00000004690	XRN1	100	59.230	Vicugna_pacos
ENSORLG00020005559	xrn1	93	72.778	ENSVVUG00000024461	XRN1	99	79.524	Vulpes_vulpes
ENSORLG00020005559	xrn1	100	61.610	ENSXETG00000000619	xrn1	99	85.827	Xenopus_tropicalis
ENSORLG00020005559	xrn1	100	76.488	ENSXCOG00000007917	xrn1	96	85.714	Xiphophorus_couchianus
ENSORLG00020005559	xrn1	92	85.304	ENSXMAG00000018320	xrn1	98	86.281	Xiphophorus_maculatus