EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020006213 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 1989 bases
Position: chr15:472941-474929
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020005405	LSM	PF01423.22	4.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020006347	-	465	-	ENSORLP00020005405	154 (aa)	-	-

Gene Model

Click here to download ENSORLG00020006213's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020006213's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020006213	-	86	98.496	ENSORLG00020003941	lsm1	100	98.496

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020006213	-	86	84.211	ENSG00000175324	LSM1	100	84.211	Homo_sapiens
ENSORLG00020006213	-	86	95.489	ENSAPOG00000010833	lsm1	100	95.489	Acanthochromis_polyacanthus
ENSORLG00020006213	-	86	84.211	ENSAMEG00000011141	LSM1	100	84.211	Ailuropoda_melanoleuca
ENSORLG00020006213	-	50	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSORLG00020006213	-	86	95.489	ENSAOCG00000017997	-	100	95.489	Amphiprion_ocellaris
ENSORLG00020006213	-	86	95.489	ENSAOCG00000017096	lsm1	100	95.489	Amphiprion_ocellaris
ENSORLG00020006213	-	86	95.489	ENSAPEG00000011669	lsm1	100	95.489	Amphiprion_percula
ENSORLG00020006213	-	86	96.992	ENSATEG00000022266	lsm1	100	96.992	Anabas_testudineus
ENSORLG00020006213	-	86	84.211	ENSANAG00000027785	LSM1	100	84.211	Aotus_nancymaae
ENSORLG00020006213	-	86	96.992	ENSACLG00000011400	lsm1	100	96.992	Astatotilapia_calliptera
ENSORLG00020006213	-	86	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSORLG00020006213	-	86	83.459	ENSBTAG00000001612	LSM1	100	83.459	Bos_taurus
ENSORLG00020006213	-	75	50.847	WBGene00003076	lsm-1	90	50.847	Caenorhabditis_elegans
ENSORLG00020006213	-	86	83.459	ENSCJAG00000048015	LSM1	100	83.459	Callithrix_jacchus
ENSORLG00020006213	-	86	84.211	ENSCAFG00000006113	LSM1	100	84.211	Canis_familiaris
ENSORLG00020006213	-	86	84.211	ENSCAFG00020001822	LSM1	100	84.211	Canis_lupus_dingo
ENSORLG00020006213	-	86	84.211	ENSCHIG00000013194	LSM1	100	84.211	Capra_hircus
ENSORLG00020006213	-	86	84.211	ENSTSYG00000010394	LSM1	100	84.211	Carlito_syrichta
ENSORLG00020006213	-	86	84.211	ENSCPOG00000032671	LSM1	100	84.211	Cavia_porcellus
ENSORLG00020006213	-	86	84.211	ENSCCAG00000037171	LSM1	100	84.211	Cebus_capucinus
ENSORLG00020006213	-	86	84.211	ENSCATG00000020377	LSM1	100	84.211	Cercocebus_atys
ENSORLG00020006213	-	86	82.707	ENSCLAG00000001137	LSM1	100	82.707	Chinchilla_lanigera
ENSORLG00020006213	-	86	84.211	ENSCSAG00000015485	LSM1	100	84.211	Chlorocebus_sabaeus
ENSORLG00020006213	-	86	83.459	ENSCHOG00000006030	LSM1	100	83.459	Choloepus_hoffmanni
ENSORLG00020006213	-	82	79.528	ENSCPBG00000006569	LSM1	86	79.528	Chrysemys_picta_bellii
ENSORLG00020006213	-	86	63.910	ENSCING00000013536	-	100	63.910	Ciona_intestinalis
ENSORLG00020006213	-	86	84.211	ENSCANG00000019173	LSM1	100	84.211	Colobus_angolensis_palliatus
ENSORLG00020006213	-	69	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSORLG00020006213	-	86	83.459	ENSCGRG00001024560	-	100	83.459	Cricetulus_griseus_chok1gshd
ENSORLG00020006213	-	86	83.459	ENSCGRG00000006554	-	100	83.459	Cricetulus_griseus_crigri
ENSORLG00020006213	-	69	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSORLG00020006213	-	86	93.985	ENSCSEG00000008319	lsm1	92	93.985	Cynoglossus_semilaevis
ENSORLG00020006213	-	86	96.241	ENSCSEG00000010570	lsm1	92	96.241	Cynoglossus_semilaevis
ENSORLG00020006213	-	86	95.489	ENSCVAG00000003871	lsm1	100	95.489	Cyprinodon_variegatus
ENSORLG00020006213	-	86	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSORLG00020006213	-	86	80.303	ENSDNOG00000030989	-	99	80.303	Dasypus_novemcinctus
ENSORLG00020006213	-	77	67.227	ENSDNOG00000046620	-	100	67.227	Dasypus_novemcinctus
ENSORLG00020006213	-	86	83.459	ENSDNOG00000032911	-	100	83.459	Dasypus_novemcinctus
ENSORLG00020006213	-	86	84.211	ENSDNOG00000046387	-	100	84.211	Dasypus_novemcinctus
ENSORLG00020006213	-	86	84.211	ENSDORG00000028172	Lsm1	100	84.211	Dipodomys_ordii
ENSORLG00020006213	-	81	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSORLG00020006213	-	86	82.707	ENSEASG00005016677	LSM1	100	82.707	Equus_asinus_asinus
ENSORLG00020006213	-	86	82.707	ENSECAG00000010461	LSM1	100	82.707	Equus_caballus
ENSORLG00020006213	-	51	91.139	ENSEEUG00000015181	LSM1	80	91.139	Erinaceus_europaeus
ENSORLG00020006213	-	86	93.985	ENSELUG00000002322	lsm1	100	93.985	Esox_lucius
ENSORLG00020006213	-	86	77.444	ENSELUG00000023374	lsm1	100	77.444	Esox_lucius
ENSORLG00020006213	-	86	84.211	ENSFCAG00000039335	LSM1	100	84.211	Felis_catus
ENSORLG00020006213	-	77	83.051	ENSFALG00000006723	LSM1	100	83.051	Ficedula_albicollis
ENSORLG00020006213	-	86	84.211	ENSFDAG00000007658	LSM1	100	84.211	Fukomys_damarensis
ENSORLG00020006213	-	86	95.489	ENSFHEG00000009556	lsm1	100	95.489	Fundulus_heteroclitus
ENSORLG00020006213	-	86	94.737	ENSGMOG00000016651	lsm1	98	94.737	Gadus_morhua
ENSORLG00020006213	-	86	82.707	ENSGALG00000003245	LSM1	100	82.707	Gallus_gallus
ENSORLG00020006213	-	86	95.489	ENSGAFG00000011355	lsm1	100	95.489	Gambusia_affinis
ENSORLG00020006213	-	86	96.992	ENSGACG00000011763	lsm1	98	96.992	Gasterosteus_aculeatus
ENSORLG00020006213	-	86	85.714	ENSGAGG00000024065	LSM1	100	85.714	Gopherus_agassizii
ENSORLG00020006213	-	86	84.211	ENSGGOG00000022658	LSM1	100	84.211	Gorilla_gorilla
ENSORLG00020006213	-	86	96.992	ENSHBUG00000010897	lsm1	100	96.992	Haplochromis_burtoni
ENSORLG00020006213	-	86	66.917	ENSHGLG00000017574	-	100	66.917	Heterocephalus_glaber_female
ENSORLG00020006213	-	86	84.211	ENSHGLG00000005711	LSM1	100	84.211	Heterocephalus_glaber_female
ENSORLG00020006213	-	86	84.211	ENSHGLG00100017660	LSM1	100	84.211	Heterocephalus_glaber_male
ENSORLG00020006213	-	86	66.917	ENSHGLG00100012152	-	100	66.917	Heterocephalus_glaber_male
ENSORLG00020006213	-	86	94.737	ENSHCOG00000017233	lsm1	100	94.737	Hippocampus_comes
ENSORLG00020006213	-	86	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSORLG00020006213	-	50	92.208	ENSSTOG00000026870	LSM1	94	92.208	Ictidomys_tridecemlineatus
ENSORLG00020006213	-	86	83.459	ENSJJAG00000014605	-	100	83.459	Jaculus_jaculus
ENSORLG00020006213	-	86	96.992	ENSKMAG00000003016	lsm1	100	96.992	Kryptolebias_marmoratus
ENSORLG00020006213	-	86	96.241	ENSLBEG00000022352	lsm1	100	96.241	Labrus_bergylta
ENSORLG00020006213	-	78	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSORLG00020006213	-	86	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSORLG00020006213	-	86	84.211	ENSLAFG00000003534	LSM1	100	84.211	Loxodonta_africana
ENSORLG00020006213	-	86	84.211	ENSMFAG00000032661	LSM1	100	84.211	Macaca_fascicularis
ENSORLG00020006213	-	86	84.211	ENSMLEG00000034535	LSM1	100	84.211	Mandrillus_leucophaeus
ENSORLG00020006213	-	86	96.241	ENSMAMG00000007464	lsm1	100	96.241	Mastacembelus_armatus
ENSORLG00020006213	-	86	96.992	ENSMZEG00005010321	lsm1	100	96.992	Maylandia_zebra
ENSORLG00020006213	-	86	82.707	ENSMGAG00000002125	LSM1	100	82.707	Meleagris_gallopavo
ENSORLG00020006213	-	86	84.211	ENSMICG00000030726	LSM1	100	84.211	Microcebus_murinus
ENSORLG00020006213	-	86	83.459	ENSMOCG00000022817	Lsm1	100	83.459	Microtus_ochrogaster
ENSORLG00020006213	-	86	95.489	ENSMMOG00000015466	lsm1	100	95.489	Mola_mola
ENSORLG00020006213	-	86	84.962	ENSMODG00000010732	-	100	84.962	Monodelphis_domestica
ENSORLG00020006213	-	50	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSORLG00020006213	-	86	83.459	MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	Mus_caroli
ENSORLG00020006213	-	86	83.459	ENSMUSG00000037296	Lsm1	100	83.459	Mus_musculus
ENSORLG00020006213	-	86	83.459	MGP_PahariEiJ_G0021400	Lsm1	100	83.459	Mus_pahari
ENSORLG00020006213	-	86	83.459	MGP_SPRETEiJ_G0032049	Lsm1	100	83.459	Mus_spretus
ENSORLG00020006213	-	86	84.962	ENSMPUG00000009883	LSM1	100	84.962	Mustela_putorius_furo
ENSORLG00020006213	-	86	84.211	ENSMLUG00000003734	LSM1	100	84.211	Myotis_lucifugus
ENSORLG00020006213	-	86	83.459	ENSNGAG00000003753	Lsm1	100	83.459	Nannospalax_galili
ENSORLG00020006213	-	50	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSORLG00020006213	-	86	84.211	ENSNLEG00000029390	LSM1	100	84.211	Nomascus_leucogenys
ENSORLG00020006213	-	86	84.962	ENSMEUG00000014077	LSM1	100	84.962	Notamacropus_eugenii
ENSORLG00020006213	-	76	79.487	ENSOPRG00000000333	LSM1	100	79.487	Ochotona_princeps
ENSORLG00020006213	-	86	84.211	ENSODEG00000004834	LSM1	100	84.211	Octodon_degus
ENSORLG00020006213	-	86	96.992	ENSONIG00000010782	lsm1	100	96.992	Oreochromis_niloticus
ENSORLG00020006213	-	86	84.962	ENSOANG00000003256	LSM1	100	84.962	Ornithorhynchus_anatinus
ENSORLG00020006213	-	86	84.211	ENSOCUG00000015399	LSM1	100	84.211	Oryctolagus_cuniculus
ENSORLG00020006213	-	86	98.496	ENSORLG00000030288	lsm1	100	98.496	Oryzias_latipes
ENSORLG00020006213	-	86	98.496	ENSORLG00015018350	lsm1	100	98.496	Oryzias_latipes_hsok
ENSORLG00020006213	-	86	96.992	ENSOMEG00000012454	lsm1	100	96.992	Oryzias_melastigma
ENSORLG00020006213	-	86	84.211	ENSOGAG00000015161	LSM1	100	84.211	Otolemur_garnettii
ENSORLG00020006213	-	86	84.211	ENSOARG00000001317	LSM1	100	84.211	Ovis_aries
ENSORLG00020006213	-	86	84.211	ENSPPAG00000032279	LSM1	100	84.211	Pan_paniscus
ENSORLG00020006213	-	86	84.211	ENSPPRG00000014172	-	100	84.211	Panthera_pardus
ENSORLG00020006213	-	86	84.211	ENSPTIG00000010289	LSM1	100	84.211	Panthera_tigris_altaica
ENSORLG00020006213	-	86	84.211	ENSPTRG00000020169	LSM1	100	84.211	Pan_troglodytes
ENSORLG00020006213	-	86	84.211	ENSPANG00000008814	LSM1	100	84.211	Papio_anubis
ENSORLG00020006213	-	86	87.218	ENSPKIG00000001839	lsm1	100	87.218	Paramormyrops_kingsleyae
ENSORLG00020006213	-	86	77.444	ENSPKIG00000019409	LSM1	99	77.444	Paramormyrops_kingsleyae
ENSORLG00020006213	-	84	80.000	ENSPSIG00000012563	LSM1	99	80.000	Pelodiscus_sinensis
ENSORLG00020006213	-	50	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSORLG00020006213	-	73	71.681	ENSPMAG00000002671	lsm1	100	71.681	Petromyzon_marinus
ENSORLG00020006213	-	86	83.459	ENSPCIG00000008880	LSM1	100	83.459	Phascolarctos_cinereus
ENSORLG00020006213	-	86	95.489	ENSPFOG00000016029	lsm1	100	95.489	Poecilia_formosa
ENSORLG00020006213	-	86	95.489	ENSPLAG00000007879	lsm1	100	95.489	Poecilia_latipinna
ENSORLG00020006213	-	86	95.489	ENSPMEG00000023550	lsm1	100	95.489	Poecilia_mexicana
ENSORLG00020006213	-	86	95.489	ENSPREG00000009574	lsm1	100	95.489	Poecilia_reticulata
ENSORLG00020006213	-	86	84.211	ENSPPYG00000018521	LSM1	100	84.211	Pongo_abelii
ENSORLG00020006213	-	86	84.211	ENSPCOG00000020901	-	100	84.211	Propithecus_coquereli
ENSORLG00020006213	-	86	84.211	ENSPVAG00000006016	LSM1	100	84.211	Pteropus_vampyrus
ENSORLG00020006213	-	86	96.992	ENSPNYG00000018067	lsm1	100	96.992	Pundamilia_nyererei
ENSORLG00020006213	-	86	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSORLG00020006213	-	86	82.707	ENSRNOG00000015375	Lsm1	100	82.707	Rattus_norvegicus
ENSORLG00020006213	-	86	84.211	ENSRBIG00000027449	LSM1	100	84.211	Rhinopithecus_bieti
ENSORLG00020006213	-	86	84.211	ENSRROG00000036074	LSM1	100	84.211	Rhinopithecus_roxellana
ENSORLG00020006213	-	71	41.880	YJL124C	LSM1	67	41.880	Saccharomyces_cerevisiae
ENSORLG00020006213	-	86	84.962	ENSSHAG00000017260	LSM1	100	84.962	Sarcophilus_harrisii
ENSORLG00020006213	-	86	86.466	ENSSFOG00015019528	lsm1	100	86.466	Scleropages_formosus
ENSORLG00020006213	-	86	96.992	ENSSMAG00000004930	lsm1	100	96.992	Scophthalmus_maximus
ENSORLG00020006213	-	86	95.489	ENSSDUG00000021823	lsm1	100	95.489	Seriola_dumerili
ENSORLG00020006213	-	86	95.489	ENSSLDG00000012154	lsm1	100	95.489	Seriola_lalandi_dorsalis
ENSORLG00020006213	-	86	85.714	ENSSPUG00000014878	LSM1	100	85.714	Sphenodon_punctatus
ENSORLG00020006213	-	86	96.241	ENSSPAG00000020548	lsm1	100	96.241	Stegastes_partitus
ENSORLG00020006213	-	86	84.211	ENSSSCG00000039058	LSM1	100	84.211	Sus_scrofa
ENSORLG00020006213	-	86	84.962	ENSTGUG00000004793	LSM1	100	84.962	Taeniopygia_guttata
ENSORLG00020006213	-	86	95.489	ENSTRUG00000025239	lsm1	100	95.489	Takifugu_rubripes
ENSORLG00020006213	-	86	92.481	ENSTNIG00000004055	lsm1	100	92.481	Tetraodon_nigroviridis
ENSORLG00020006213	-	76	82.051	ENSTBEG00000015884	LSM1	100	82.051	Tupaia_belangeri
ENSORLG00020006213	-	86	84.211	ENSTTRG00000004482	LSM1	100	84.211	Tursiops_truncatus
ENSORLG00020006213	-	86	84.211	ENSUAMG00000004103	LSM1	100	84.211	Ursus_americanus
ENSORLG00020006213	-	86	84.211	ENSUMAG00000009132	LSM1	100	84.211	Ursus_maritimus
ENSORLG00020006213	-	50	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSORLG00020006213	-	86	84.211	ENSVVUG00000020191	LSM1	100	84.211	Vulpes_vulpes
ENSORLG00020006213	-	53	65.432	ENSVVUG00000014880	-	86	65.432	Vulpes_vulpes
ENSORLG00020006213	-	86	80.292	ENSXETG00000009004	lsm1	100	80.292	Xenopus_tropicalis
ENSORLG00020006213	-	86	93.985	ENSXCOG00000015631	lsm1	100	93.985	Xiphophorus_couchianus
ENSORLG00020006213	-	86	93.985	ENSXMAG00000026637	lsm1	100	93.985	Xiphophorus_maculatus