EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020006829 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-32e23.4
Alias: -
Full Name: si:dkey-32e23.4
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 8023 bases
Position: chr9:16189748-16197770
Accession: ZDB-GENE-081105-41
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020005867	MMR_HSR1	PF01926.23	2.7e-06	1	1
ENSORLP00020005909	MMR_HSR1	PF01926.23	3.2e-06	1	1
ENSORLP00020025037	MMR_HSR1	PF01926.23	3.4e-06	1	1
ENSORLP00020025049	MMR_HSR1	PF01926.23	3.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020005561	-	1986	-	ENSORLP00020005867	661 (aa)	-	-
ENSORLT00020005443	-	4250	-	ENSORLP00020025037	673 (aa)	-	-
ENSORLT00020005410	-	4303	-	ENSORLP00020025049	727 (aa)	-	-
ENSORLT00020005488	-	4213	-	ENSORLP00020005909	697 (aa)	-	-

Gene Model

Click here to download ENSORLG00020006829's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020006829's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020006829	si:dkey-32e23.4	100	68.795	ENSORLG00020002127	-	100	68.795
ENSORLG00020006829	si:dkey-32e23.4	100	68.429	ENSORLG00020016524	dnm1l	100	68.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020006829	si:dkey-32e23.4	100	88.805	ENSCVAG00000010346	si:dkey-32e23.4	100	88.805	Cyprinodon_variegatus
ENSORLG00020006829	si:dkey-32e23.4	100	84.266	ENSELUG00000017713	si:dkey-32e23.4	100	84.266	Esox_lucius
ENSORLG00020006829	si:dkey-32e23.4	100	90.045	ENSFHEG00000019298	si:dkey-32e23.4	100	90.045	Fundulus_heteroclitus
ENSORLG00020006829	si:dkey-32e23.4	100	76.254	ENSGMOG00000005670	si:dkey-32e23.4	100	76.254	Gadus_morhua
ENSORLG00020006829	si:dkey-32e23.4	100	88.200	ENSHCOG00000018024	si:dkey-32e23.4	100	88.200	Hippocampus_comes
ENSORLG00020006829	si:dkey-32e23.4	100	84.894	ENSIPUG00000007113	si:dkey-32e23.4	100	84.894	Ictalurus_punctatus
ENSORLG00020006829	si:dkey-32e23.4	100	89.259	ENSLBEG00000004848	si:dkey-32e23.4	100	89.259	Labrus_bergylta
ENSORLG00020006829	si:dkey-32e23.4	100	91.085	ENSMALG00000006625	si:dkey-32e23.4	100	91.085	Monopterus_albus
ENSORLG00020006829	si:dkey-32e23.4	100	99.851	ENSORLG00000011119	si:dkey-32e23.4	97	99.851	Oryzias_latipes
ENSORLG00020006829	si:dkey-32e23.4	100	99.140	ENSORLG00015021365	si:dkey-32e23.4	100	99.140	Oryzias_latipes_hsok
ENSORLG00020006829	si:dkey-32e23.4	100	97.474	ENSOMEG00000009143	si:dkey-32e23.4	100	97.474	Oryzias_melastigma
ENSORLG00020006829	si:dkey-32e23.4	100	88.956	ENSPLAG00000023009	si:dkey-32e23.4	100	88.956	Poecilia_latipinna
ENSORLG00020006829	si:dkey-32e23.4	100	88.956	ENSPMEG00000009231	si:dkey-32e23.4	100	88.956	Poecilia_mexicana
ENSORLG00020006829	si:dkey-32e23.4	100	82.779	ENSPNAG00000020681	si:dkey-32e23.4	100	82.779	Pygocentrus_nattereri
ENSORLG00020006829	si:dkey-32e23.4	100	89.410	ENSSMAG00000007121	si:dkey-32e23.4	96	89.410	Scophthalmus_maximus
ENSORLG00020006829	si:dkey-32e23.4	100	88.956	ENSSDUG00000019756	si:dkey-32e23.4	100	88.956	Seriola_dumerili
ENSORLG00020006829	si:dkey-32e23.4	100	88.200	ENSSPAG00000011027	si:dkey-32e23.4	100	88.200	Stegastes_partitus