EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020007936 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 6262 bases
Position: chr9:15545235-15551496
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020025785	SMN	PF06003.12	6.7e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020003560	-	780	-	ENSORLP00020025785	259 (aa)	-	-

Gene Model

Click here to download ENSORLG00020007936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020007936's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020007936	smn1	93	54.878	ENSG00000205571	SMN2	80	70.270	Homo_sapiens
ENSORLG00020007936	smn1	93	54.878	ENSG00000172062	SMN1	92	51.923	Homo_sapiens
ENSORLG00020007936	smn1	100	71.479	ENSAPOG00000011324	smn1	100	72.887	Acanthochromis_polyacanthus
ENSORLG00020007936	smn1	59	61.146	ENSAMEG00000003316	-	89	53.903	Ailuropoda_melanoleuca
ENSORLG00020007936	smn1	65	75.148	ENSACIG00000007598	smn1	92	76.331	Amphilophus_citrinellus
ENSORLG00020007936	smn1	92	67.424	ENSACIG00000019772	-	99	67.803	Amphilophus_citrinellus
ENSORLG00020007936	smn1	100	71.479	ENSAOCG00000024444	smn1	100	74.910	Amphiprion_ocellaris
ENSORLG00020007936	smn1	100	72.183	ENSAPEG00000016504	smn1	100	74.910	Amphiprion_percula
ENSORLG00020007936	smn1	95	71.956	ENSATEG00000002182	smn1	82	73.432	Anabas_testudineus
ENSORLG00020007936	smn1	66	44.162	ENSAPLG00000010912	-	96	46.231	Anas_platyrhynchos
ENSORLG00020007936	smn1	98	53.091	ENSACAG00000010017	-	96	54.909	Anolis_carolinensis
ENSORLG00020007936	smn1	96	49.123	ENSANAG00000032133	-	95	50.890	Aotus_nancymaae
ENSORLG00020007936	smn1	98	70.070	ENSACLG00000007308	smn1	94	67.354	Astatotilapia_calliptera
ENSORLG00020007936	smn1	100	58.596	ENSAMXG00000013884	smn1	100	60.932	Astyanax_mexicanus
ENSORLG00020007936	smn1	93	52.222	ENSBTAG00000005743	SMN2	93	52.612	Bos_taurus
ENSORLG00020007936	smn1	89	32.340	WBGene00004887	smn-1	94	30.263	Caenorhabditis_elegans
ENSORLG00020007936	smn1	93	55.691	ENSCJAG00000016290	-	86	63.889	Callithrix_jacchus
ENSORLG00020007936	smn1	93	51.111	ENSCAFG00000007812	SMN	93	52.985	Canis_familiaris
ENSORLG00020007936	smn1	93	51.111	ENSCAFG00020019229	-	86	52.985	Canis_lupus_dingo
ENSORLG00020007936	smn1	93	51.838	ENSCHIG00000015559	-	91	51.852	Capra_hircus
ENSORLG00020007936	smn1	93	55.285	ENSTSYG00000012058	-	93	53.933	Carlito_syrichta
ENSORLG00020007936	smn1	70	46.535	ENSCAPG00000011021	-	91	48.529	Cavia_aperea
ENSORLG00020007936	smn1	94	49.630	ENSCPOG00000036973	-	92	51.095	Cavia_porcellus
ENSORLG00020007936	smn1	94	48.375	ENSCPOG00000012328	-	93	50.360	Cavia_porcellus
ENSORLG00020007936	smn1	93	54.878	ENSCCAG00000018127	-	91	52.985	Cebus_capucinus
ENSORLG00020007936	smn1	93	54.472	ENSCATG00000037002	-	92	51.923	Cercocebus_atys
ENSORLG00020007936	smn1	93	50.000	ENSCLAG00000000284	-	91	52.734	Chinchilla_lanigera
ENSORLG00020007936	smn1	93	49.627	ENSCSAG00000015688	-	91	52.416	Chlorocebus_sabaeus
ENSORLG00020007936	smn1	67	80.000	ENSCHOG00000007346	-	100	50.199	Choloepus_hoffmanni
ENSORLG00020007936	smn1	96	51.894	ENSCPBG00000010968	-	97	52.713	Chrysemys_picta_bellii
ENSORLG00020007936	smn1	93	49.801	ENSCANG00000033324	-	89	48.092	Colobus_angolensis_palliatus
ENSORLG00020007936	smn1	93	53.469	ENSCANG00000038242	-	86	68.182	Colobus_angolensis_palliatus
ENSORLG00020007936	smn1	94	37.736	ENSCGRG00001016998	-	91	40.226	Cricetulus_griseus_chok1gshd
ENSORLG00020007936	smn1	93	52.809	ENSCGRG00001017959	-	93	52.985	Cricetulus_griseus_chok1gshd
ENSORLG00020007936	smn1	93	52.809	ENSCGRG00000007698	Smn1	93	52.985	Cricetulus_griseus_crigri
ENSORLG00020007936	smn1	96	60.071	ENSCSEG00000015227	smn1	99	60.424	Cynoglossus_semilaevis
ENSORLG00020007936	smn1	100	69.686	ENSCVAG00000007498	smn1	100	72.281	Cyprinodon_variegatus
ENSORLG00020007936	smn1	100	56.643	ENSDARG00000018494	smn1	100	59.220	Danio_rerio
ENSORLG00020007936	smn1	66	48.837	ENSDNOG00000045949	-	71	47.953	Dasypus_novemcinctus
ENSORLG00020007936	smn1	94	43.071	ENSDORG00000007082	Smn1	90	45.098	Dipodomys_ordii
ENSORLG00020007936	smn1	59	49.682	ENSETEG00000001406	-	75	49.682	Echinops_telfairi
ENSORLG00020007936	smn1	96	40.210	ENSEBUG00000011902	smn1	96	40.714	Eptatretus_burgeri
ENSORLG00020007936	smn1	56	53.741	ENSEASG00005018000	-	89	47.638	Equus_asinus_asinus
ENSORLG00020007936	smn1	59	60.897	ENSECAG00000015215	-	93	52.222	Equus_caballus
ENSORLG00020007936	smn1	87	48.235	ENSEEUG00000015777	-	100	49.194	Erinaceus_europaeus
ENSORLG00020007936	smn1	100	60.854	ENSELUG00000018067	smn1	100	61.429	Esox_lucius
ENSORLG00020007936	smn1	93	54.878	ENSFCAG00000028292	SMN	92	54.032	Felis_catus
ENSORLG00020007936	smn1	94	52.490	ENSFALG00000012320	-	95	54.198	Ficedula_albicollis
ENSORLG00020007936	smn1	94	49.091	ENSFDAG00000017683	-	92	50.362	Fukomys_damarensis
ENSORLG00020007936	smn1	97	73.188	ENSFHEG00000018508	smn1	100	73.551	Fundulus_heteroclitus
ENSORLG00020007936	smn1	100	60.294	ENSGMOG00000017279	smn1	98	61.765	Gadus_morhua
ENSORLG00020007936	smn1	94	51.321	ENSGALG00000002430	SMN	97	53.226	Gallus_gallus
ENSORLG00020007936	smn1	100	81.853	ENSGAFG00000009501	smn1	100	81.853	Gambusia_affinis
ENSORLG00020007936	smn1	100	74.182	ENSGACG00000010584	smn1	97	73.091	Gasterosteus_aculeatus
ENSORLG00020007936	smn1	96	52.273	ENSGAGG00000011374	-	95	55.303	Gopherus_agassizii
ENSORLG00020007936	smn1	97	38.776	ENSGAGG00000013639	-	92	38.624	Gopherus_agassizii
ENSORLG00020007936	smn1	90	55.042	ENSGGOG00000003872	-	93	55.000	Gorilla_gorilla
ENSORLG00020007936	smn1	60	60.127	ENSGGOG00000026704	-	74	60.127	Gorilla_gorilla
ENSORLG00020007936	smn1	100	73.239	ENSHBUG00000013987	smn1	100	70.103	Haplochromis_burtoni
ENSORLG00020007936	smn1	94	48.897	ENSHGLG00000001018	-	92	49.635	Heterocephalus_glaber_female
ENSORLG00020007936	smn1	94	47.037	ENSHGLG00000001905	-	94	48.689	Heterocephalus_glaber_female
ENSORLG00020007936	smn1	94	48.897	ENSHGLG00100011252	-	92	49.635	Heterocephalus_glaber_male
ENSORLG00020007936	smn1	92	46.970	ENSHGLG00100018676	-	96	48.659	Heterocephalus_glaber_male
ENSORLG00020007936	smn1	93	62.366	ENSHCOG00000017136	smn1	89	67.293	Hippocampus_comes
ENSORLG00020007936	smn1	100	59.233	ENSIPUG00000012580	smn1	89	59.286	Ictalurus_punctatus
ENSORLG00020007936	smn1	90	50.965	ENSSTOG00000012288	-	93	52.344	Ictidomys_tridecemlineatus
ENSORLG00020007936	smn1	55	51.748	ENSJJAG00000014853	-	87	48.824	Jaculus_jaculus
ENSORLG00020007936	smn1	100	67.247	ENSKMAG00000007239	smn1	100	69.097	Kryptolebias_marmoratus
ENSORLG00020007936	smn1	100	73.333	ENSLBEG00000022550	smn1	100	74.737	Labrus_bergylta
ENSORLG00020007936	smn1	97	35.563	ENSLACG00000009808	-	92	35.689	Latimeria_chalumnae
ENSORLG00020007936	smn1	100	59.696	ENSLOCG00000011339	smn1	100	57.519	Lepisosteus_oculatus
ENSORLG00020007936	smn1	94	50.185	ENSLAFG00000003425	-	99	45.161	Loxodonta_africana
ENSORLG00020007936	smn1	93	47.015	ENSMFAG00000008812	-	91	48.699	Macaca_fascicularis
ENSORLG00020007936	smn1	93	55.285	ENSMFAG00000031523	SMN1	95	51.341	Macaca_fascicularis
ENSORLG00020007936	smn1	93	46.269	ENSMMUG00000030594	-	91	47.273	Macaca_mulatta
ENSORLG00020007936	smn1	93	55.285	ENSMMUG00000020214	SMN1	92	52.692	Macaca_mulatta
ENSORLG00020007936	smn1	93	55.285	ENSMNEG00000035094	-	92	52.692	Macaca_nemestrina
ENSORLG00020007936	smn1	74	38.991	ENSMNEG00000036423	-	85	39.908	Macaca_nemestrina
ENSORLG00020007936	smn1	93	55.285	ENSMLEG00000041902	-	93	52.692	Mandrillus_leucophaeus
ENSORLG00020007936	smn1	100	73.684	ENSMAMG00000011034	smn1	100	74.386	Mastacembelus_armatus
ENSORLG00020007936	smn1	100	73.239	ENSMZEG00005013634	smn1	100	72.535	Maylandia_zebra
ENSORLG00020007936	smn1	66	46.667	ENSMGAG00000008889	-	95	50.532	Meleagris_gallopavo
ENSORLG00020007936	smn1	65	56.471	ENSMAUG00000010262	Smn1	93	52.239	Mesocricetus_auratus
ENSORLG00020007936	smn1	66	56.897	ENSMICG00000034708	-	77	56.897	Microcebus_murinus
ENSORLG00020007936	smn1	93	53.208	ENSMOCG00000017833	Smn1	92	53.585	Microtus_ochrogaster
ENSORLG00020007936	smn1	96	69.318	ENSMMOG00000005504	smn1	98	71.970	Mola_mola
ENSORLG00020007936	smn1	94	50.951	ENSMODG00000001436	-	95	52.727	Monodelphis_domestica
ENSORLG00020007936	smn1	100	74.035	ENSMALG00000008025	smn1	100	74.737	Monopterus_albus
ENSORLG00020007936	smn1	93	51.504	MGP_CAROLIEiJ_G0018836	Smn1	93	52.416	Mus_caroli
ENSORLG00020007936	smn1	93	51.128	ENSMUSG00000021645	Smn1	93	52.045	Mus_musculus
ENSORLG00020007936	smn1	94	51.685	MGP_PahariEiJ_G0015911	Smn1	93	52.256	Mus_pahari
ENSORLG00020007936	smn1	64	57.831	MGP_SPRETEiJ_G0019718	Smn1	93	52.045	Mus_spretus
ENSORLG00020007936	smn1	92	50.379	ENSMPUG00000014470	-	93	52.471	Mustela_putorius_furo
ENSORLG00020007936	smn1	59	58.974	ENSMLUG00000010603	-	89	51.449	Myotis_lucifugus
ENSORLG00020007936	smn1	94	47.037	ENSNGAG00000019833	Smn1	93	50.746	Nannospalax_galili
ENSORLG00020007936	smn1	100	74.648	ENSNBRG00000023000	smn1	100	74.648	Neolamprologus_brichardi
ENSORLG00020007936	smn1	93	55.285	ENSNLEG00000004454	-	92	52.308	Nomascus_leucogenys
ENSORLG00020007936	smn1	63	46.995	ENSMEUG00000011393	-	92	46.445	Notamacropus_eugenii
ENSORLG00020007936	smn1	87	51.373	ENSOPRG00000002015	-	100	50.781	Ochotona_princeps
ENSORLG00020007936	smn1	90	50.376	ENSODEG00000015976	-	91	51.923	Octodon_degus
ENSORLG00020007936	smn1	100	74.296	ENSONIG00000011799	smn1	100	74.296	Oreochromis_niloticus
ENSORLG00020007936	smn1	94	47.778	ENSOANG00000001626	-	95	47.312	Ornithorhynchus_anatinus
ENSORLG00020007936	smn1	93	51.724	ENSOCUG00000017097	-	92	52.290	Oryctolagus_cuniculus
ENSORLG00020007936	smn1	94	40.293	ENSOCUG00000025183	-	92	41.026	Oryctolagus_cuniculus
ENSORLG00020007936	smn1	93	51.504	ENSOCUG00000026649	-	92	53.184	Oryctolagus_cuniculus
ENSORLG00020007936	smn1	100	89.789	ENSORLG00000010552	smn1	100	89.789	Oryzias_latipes
ENSORLG00020007936	smn1	100	87.324	ENSORLG00015022425	smn1	100	87.324	Oryzias_latipes_hsok
ENSORLG00020007936	smn1	100	81.338	ENSOMEG00000007824	smn1	100	81.338	Oryzias_melastigma
ENSORLG00020007936	smn1	90	45.353	ENSOGAG00000031414	-	92	47.037	Otolemur_garnettii
ENSORLG00020007936	smn1	93	51.292	ENSOARG00000005425	-	97	51.311	Ovis_aries
ENSORLG00020007936	smn1	93	54.472	ENSPPAG00000036640	-	92	51.923	Pan_paniscus
ENSORLG00020007936	smn1	93	54.878	ENSPPRG00000005575	-	92	53.815	Panthera_pardus
ENSORLG00020007936	smn1	93	54.878	ENSPTIG00000007745	-	92	53.815	Panthera_tigris_altaica
ENSORLG00020007936	smn1	93	54.878	ENSPTRG00000016955	-	90	53.386	Pan_troglodytes
ENSORLG00020007936	smn1	93	53.012	ENSPANG00000000253	-	91	51.417	Papio_anubis
ENSORLG00020007936	smn1	93	55.285	ENSPANG00000013601	-	90	53.846	Papio_anubis
ENSORLG00020007936	smn1	100	61.538	ENSPKIG00000011096	smn1	100	61.686	Paramormyrops_kingsleyae
ENSORLG00020007936	smn1	91	50.000	ENSPSIG00000014787	-	86	53.184	Pelodiscus_sinensis
ENSORLG00020007936	smn1	100	64.931	ENSPMGG00000012285	smn1	100	66.904	Periophthalmus_magnuspinnatus
ENSORLG00020007936	smn1	91	36.879	ENSPMAG00000005004	smn1	91	38.007	Petromyzon_marinus
ENSORLG00020007936	smn1	97	52.364	ENSPCIG00000025764	-	97	53.455	Phascolarctos_cinereus
ENSORLG00020007936	smn1	100	71.831	ENSPFOG00000007786	smn1	100	70.775	Poecilia_formosa
ENSORLG00020007936	smn1	100	81.467	ENSPLAG00000012071	smn1	100	81.467	Poecilia_latipinna
ENSORLG00020007936	smn1	100	81.081	ENSPMEG00000017085	smn1	100	81.081	Poecilia_mexicana
ENSORLG00020007936	smn1	100	81.081	ENSPREG00000005824	smn1	100	81.081	Poecilia_reticulata
ENSORLG00020007936	smn1	86	41.850	ENSPPYG00000019189	-	99	44.053	Pongo_abelii
ENSORLG00020007936	smn1	57	58.278	ENSPPYG00000015533	-	95	50.575	Pongo_abelii
ENSORLG00020007936	smn1	90	48.659	ENSPCAG00000004187	-	97	50.951	Procavia_capensis
ENSORLG00020007936	smn1	74	47.449	ENSPCOG00000022307	-	77	52.023	Propithecus_coquereli
ENSORLG00020007936	smn1	93	52.222	ENSPVAG00000005977	-	92	53.731	Pteropus_vampyrus
ENSORLG00020007936	smn1	100	74.648	ENSPNYG00000014148	smn1	100	74.648	Pundamilia_nyererei
ENSORLG00020007936	smn1	100	61.053	ENSPNAG00000014007	smn1	87	62.230	Pygocentrus_nattereri
ENSORLG00020007936	smn1	95	51.866	ENSRNOG00000018067	Smn1	93	51.866	Rattus_norvegicus
ENSORLG00020007936	smn1	93	53.469	ENSRBIG00000037052	-	90	53.441	Rhinopithecus_bieti
ENSORLG00020007936	smn1	91	50.820	ENSRBIG00000036775	-	88	50.820	Rhinopithecus_bieti
ENSORLG00020007936	smn1	94	51.429	ENSRROG00000031088	-	91	45.556	Rhinopithecus_roxellana
ENSORLG00020007936	smn1	93	53.469	ENSRROG00000039399	-	92	52.308	Rhinopithecus_roxellana
ENSORLG00020007936	smn1	57	58.667	ENSSBOG00000020112	-	87	47.266	Saimiri_boliviensis_boliviensis
ENSORLG00020007936	smn1	93	56.098	ENSSBOG00000011665	-	85	63.889	Saimiri_boliviensis_boliviensis
ENSORLG00020007936	smn1	96	52.555	ENSSHAG00000001499	-	98	53.030	Sarcophilus_harrisii
ENSORLG00020007936	smn1	100	64.615	ENSSFOG00015015507	smn1	100	64.615	Scleropages_formosus
ENSORLG00020007936	smn1	100	67.958	ENSSMAG00000007922	smn1	100	71.127	Scophthalmus_maximus
ENSORLG00020007936	smn1	100	74.035	ENSSDUG00000018533	smn1	100	75.439	Seriola_dumerili
ENSORLG00020007936	smn1	100	74.386	ENSSLDG00000021135	smn1	100	75.789	Seriola_lalandi_dorsalis
ENSORLG00020007936	smn1	97	53.875	ENSSPUG00000000373	-	99	53.546	Sphenodon_punctatus
ENSORLG00020007936	smn1	100	78.491	ENSSPAG00000004345	smn1	100	78.491	Stegastes_partitus
ENSORLG00020007936	smn1	93	52.399	ENSSSCG00000016970	-	92	52.788	Sus_scrofa
ENSORLG00020007936	smn1	93	45.020	ENSSSCG00000029127	-	89	44.841	Sus_scrofa
ENSORLG00020007936	smn1	90	45.693	ENSTGUG00000001548	-	95	50.373	Taeniopygia_guttata
ENSORLG00020007936	smn1	100	61.484	ENSTRUG00000000736	smn	100	61.484	Takifugu_rubripes
ENSORLG00020007936	smn1	100	58.966	ENSTNIG00000009892	smn1	100	60.000	Tetraodon_nigroviridis
ENSORLG00020007936	smn1	59	62.420	ENSTBEG00000002399	-	76	62.420	Tupaia_belangeri
ENSORLG00020007936	smn1	93	51.128	ENSTTRG00000005080	-	91	53.030	Tursiops_truncatus
ENSORLG00020007936	smn1	59	60.256	ENSUAMG00000024947	-	57	60.256	Ursus_americanus
ENSORLG00020007936	smn1	59	59.615	ENSUMAG00000007842	-	69	52.985	Ursus_maritimus
ENSORLG00020007936	smn1	66	77.778	ENSVPAG00000009887	-	66	75.676	Vicugna_pacos
ENSORLG00020007936	smn1	93	51.111	ENSVVUG00000006934	-	93	52.985	Vulpes_vulpes
ENSORLG00020007936	smn1	98	53.623	ENSXETG00000018189	smn2	95	54.710	Xenopus_tropicalis
ENSORLG00020007936	smn1	86	35.227	ENSXETG00000004912	-	82	59.322	Xenopus_tropicalis
ENSORLG00020007936	smn1	100	81.081	ENSXMAG00000001521	smn1	100	81.081	Xiphophorus_maculatus