EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020008216 (Gene tree)
Gene ID: -
Gene Symbol: snrpf
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 2291 bases
Position: chr23:19259788-19262078
Accession: ZDB-GENE-040930-9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020007350	LSM	PF01423.22	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020003038	-	255	-	ENSORLP00020007350	84 (aa)	-	-

Gene Model

Click here to download ENSORLG00020008216's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020008216's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020008216	snrpf	77	48.485	ENSORLG00020017383	lsm6	83	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020008216	snrpf	87	94.595	ENSG00000139343	SNRPF	86	94.595	Homo_sapiens
ENSORLG00020008216	snrpf	87	97.297	ENSAPOG00000003377	snrpf	58	97.297	Acanthochromis_polyacanthus
ENSORLG00020008216	snrpf	87	94.595	ENSAMEG00000002166	-	87	94.595	Ailuropoda_melanoleuca
ENSORLG00020008216	snrpf	88	81.333	ENSAMEG00000018718	-	86	82.432	Ailuropoda_melanoleuca
ENSORLG00020008216	snrpf	86	97.260	ENSACIG00000013216	snrpf	86	97.260	Amphilophus_citrinellus
ENSORLG00020008216	snrpf	86	97.260	ENSAOCG00000015108	snrpf	86	97.260	Amphiprion_ocellaris
ENSORLG00020008216	snrpf	86	97.260	ENSAPEG00000022022	snrpf	86	97.260	Amphiprion_percula
ENSORLG00020008216	snrpf	86	97.260	ENSATEG00000022625	snrpf	78	97.260	Anabas_testudineus
ENSORLG00020008216	snrpf	87	93.243	ENSACAG00000014073	SNRPF	85	93.243	Anolis_carolinensis
ENSORLG00020008216	snrpf	83	88.732	ENSANAG00000020297	-	65	88.732	Aotus_nancymaae
ENSORLG00020008216	snrpf	87	94.595	ENSANAG00000032845	SNRPF	86	94.595	Aotus_nancymaae
ENSORLG00020008216	snrpf	87	64.865	ENSANAG00000025860	-	83	64.865	Aotus_nancymaae
ENSORLG00020008216	snrpf	86	97.260	ENSACLG00000016066	snrpf	86	97.260	Astatotilapia_calliptera
ENSORLG00020008216	snrpf	100	100.000	ENSAMXG00000007421	snrpf	99	100.000	Astyanax_mexicanus
ENSORLG00020008216	snrpf	87	94.595	ENSBTAG00000016271	SNRPF	86	94.595	Bos_taurus
ENSORLG00020008216	snrpf	90	90.909	ENSBTAG00000050012	-	91	90.541	Bos_taurus
ENSORLG00020008216	snrpf	90	68.831	WBGene00004918	snr-5	85	70.833	Caenorhabditis_elegans
ENSORLG00020008216	snrpf	87	94.595	ENSCJAG00000002705	-	86	94.595	Callithrix_jacchus
ENSORLG00020008216	snrpf	83	88.732	ENSCAFG00000031151	-	85	89.041	Canis_familiaris
ENSORLG00020008216	snrpf	87	94.595	ENSCAFG00000006395	-	67	94.595	Canis_familiaris
ENSORLG00020008216	snrpf	92	83.333	ENSCAFG00020013161	-	74	91.429	Canis_lupus_dingo
ENSORLG00020008216	snrpf	83	88.732	ENSCAFG00020010823	-	85	89.041	Canis_lupus_dingo
ENSORLG00020008216	snrpf	87	81.081	ENSTSYG00000030635	-	86	81.081	Carlito_syrichta
ENSORLG00020008216	snrpf	87	89.333	ENSTSYG00000036502	-	86	89.333	Carlito_syrichta
ENSORLG00020008216	snrpf	95	88.889	ENSTSYG00000031636	-	61	90.411	Carlito_syrichta
ENSORLG00020008216	snrpf	87	94.595	ENSCAPG00000007242	SNRPF	87	94.595	Cavia_aperea
ENSORLG00020008216	snrpf	87	94.595	ENSCPOG00000013898	SNRPF	86	94.595	Cavia_porcellus
ENSORLG00020008216	snrpf	100	94.118	ENSCCAG00000017356	-	86	94.595	Cebus_capucinus
ENSORLG00020008216	snrpf	99	85.714	ENSCCAG00000033627	-	57	86.301	Cebus_capucinus
ENSORLG00020008216	snrpf	87	94.595	ENSCCAG00000037378	-	86	94.595	Cebus_capucinus
ENSORLG00020008216	snrpf	87	94.595	ENSCLAG00000007200	SNRPF	86	94.595	Chinchilla_lanigera
ENSORLG00020008216	snrpf	87	94.595	ENSCSAG00000003602	-	60	94.595	Chlorocebus_sabaeus
ENSORLG00020008216	snrpf	75	95.238	ENSCHOG00000009392	SNRPF	98	95.238	Choloepus_hoffmanni
ENSORLG00020008216	snrpf	100	89.412	ENSCPBG00000024287	-	60	90.541	Chrysemys_picta_bellii
ENSORLG00020008216	snrpf	100	84.706	ENSCPBG00000001985	-	88	86.486	Chrysemys_picta_bellii
ENSORLG00020008216	snrpf	87	86.486	ENSCPBG00000006227	-	86	86.486	Chrysemys_picta_bellii
ENSORLG00020008216	snrpf	100	85.882	ENSCPBG00000026463	-	86	86.486	Chrysemys_picta_bellii
ENSORLG00020008216	snrpf	100	84.706	ENSCSAVG00000007498	-	84	86.486	Ciona_savignyi
ENSORLG00020008216	snrpf	87	94.595	ENSCGRG00001017100	-	86	94.595	Cricetulus_griseus_chok1gshd
ENSORLG00020008216	snrpf	86	87.671	ENSCGRG00001008965	-	57	87.671	Cricetulus_griseus_chok1gshd
ENSORLG00020008216	snrpf	87	94.595	ENSCGRG00000000336	-	86	94.595	Cricetulus_griseus_crigri
ENSORLG00020008216	snrpf	92	88.462	ENSCGRG00000018878	-	91	87.671	Cricetulus_griseus_crigri
ENSORLG00020008216	snrpf	87	95.946	ENSCSEG00000004748	snrpf	86	95.946	Cynoglossus_semilaevis
ENSORLG00020008216	snrpf	87	97.297	ENSCVAG00000000397	snrpf	59	97.297	Cyprinodon_variegatus
ENSORLG00020008216	snrpf	87	94.737	ENSDARG00000105037	snrpf	86	94.737	Danio_rerio
ENSORLG00020008216	snrpf	87	93.243	ENSDNOG00000048989	-	66	93.243	Dasypus_novemcinctus
ENSORLG00020008216	snrpf	87	78.378	ENSDNOG00000049373	-	64	78.378	Dasypus_novemcinctus
ENSORLG00020008216	snrpf	83	85.915	ENSDORG00000025351	-	99	85.915	Dipodomys_ordii
ENSORLG00020008216	snrpf	69	91.525	ENSDORG00000029740	-	72	91.525	Dipodomys_ordii
ENSORLG00020008216	snrpf	99	75.000	FBgn0000426	SmF	83	78.082	Drosophila_melanogaster
ENSORLG00020008216	snrpf	87	94.595	ENSETEG00000001558	-	86	94.595	Echinops_telfairi
ENSORLG00020008216	snrpf	89	76.623	ENSEBUG00000001793	-	76	81.690	Eptatretus_burgeri
ENSORLG00020008216	snrpf	87	94.595	ENSECAG00000019817	SNRPF	60	94.595	Equus_caballus
ENSORLG00020008216	snrpf	87	94.595	ENSEEUG00000013509	SNRPF	87	94.595	Erinaceus_europaeus
ENSORLG00020008216	snrpf	100	97.647	ENSELUG00000003121	RUXF	99	97.647	Esox_lucius
ENSORLG00020008216	snrpf	100	94.118	ENSELUG00000007737	RUXF	85	95.946	Esox_lucius
ENSORLG00020008216	snrpf	87	73.973	ENSFCAG00000021942	-	85	73.973	Felis_catus
ENSORLG00020008216	snrpf	87	94.595	ENSFCAG00000029966	-	86	94.595	Felis_catus
ENSORLG00020008216	snrpf	98	75.904	ENSFCAG00000031148	-	68	72.973	Felis_catus
ENSORLG00020008216	snrpf	87	94.595	ENSFALG00000010799	SNRPF	86	94.595	Ficedula_albicollis
ENSORLG00020008216	snrpf	87	94.595	ENSFDAG00000002831	-	86	94.595	Fukomys_damarensis
ENSORLG00020008216	snrpf	87	97.297	ENSFHEG00000003240	snrpf	65	97.297	Fundulus_heteroclitus
ENSORLG00020008216	snrpf	87	97.297	ENSGMOG00000007741	snrpf	87	97.297	Gadus_morhua
ENSORLG00020008216	snrpf	87	94.595	ENSGALG00000011409	SNRPF	86	94.595	Gallus_gallus
ENSORLG00020008216	snrpf	86	97.260	ENSGAFG00000016187	snrpf	84	97.260	Gambusia_affinis
ENSORLG00020008216	snrpf	100	98.824	ENSGACG00000020055	snrpf	100	98.824	Gasterosteus_aculeatus
ENSORLG00020008216	snrpf	87	83.562	ENSGAGG00000020974	-	61	83.562	Gopherus_agassizii
ENSORLG00020008216	snrpf	87	87.838	ENSGAGG00000012945	-	68	89.189	Gopherus_agassizii
ENSORLG00020008216	snrpf	93	87.342	ENSGAGG00000022991	-	80	89.706	Gopherus_agassizii
ENSORLG00020008216	snrpf	80	82.353	ENSGAGG00000014132	-	82	82.353	Gopherus_agassizii
ENSORLG00020008216	snrpf	70	85.000	ENSGAGG00000011163	-	86	87.755	Gopherus_agassizii
ENSORLG00020008216	snrpf	87	94.595	ENSGGOG00000001127	-	86	94.595	Gorilla_gorilla
ENSORLG00020008216	snrpf	92	71.795	ENSGGOG00000039564	-	89	70.270	Gorilla_gorilla
ENSORLG00020008216	snrpf	98	75.904	ENSGGOG00000039936	-	82	72.973	Gorilla_gorilla
ENSORLG00020008216	snrpf	87	94.595	ENSHGLG00000009108	SNRPF	86	94.595	Heterocephalus_glaber_female
ENSORLG00020008216	snrpf	87	93.243	ENSHGLG00000021172	-	86	93.243	Heterocephalus_glaber_female
ENSORLG00020008216	snrpf	87	94.595	ENSHGLG00100008103	-	87	94.595	Heterocephalus_glaber_male
ENSORLG00020008216	snrpf	87	93.243	ENSHGLG00100019596	-	86	93.243	Heterocephalus_glaber_male
ENSORLG00020008216	snrpf	74	86.957	ENSHCOG00000018663	snrpf	54	86.957	Hippocampus_comes
ENSORLG00020008216	snrpf	87	97.297	ENSIPUG00000018994	snrpf	86	97.297	Ictalurus_punctatus
ENSORLG00020008216	snrpf	87	94.595	ENSSTOG00000010434	-	86	94.595	Ictidomys_tridecemlineatus
ENSORLG00020008216	snrpf	100	76.471	ENSJJAG00000004558	-	88	77.027	Jaculus_jaculus
ENSORLG00020008216	snrpf	100	80.000	ENSJJAG00000010502	-	88	81.081	Jaculus_jaculus
ENSORLG00020008216	snrpf	87	94.595	ENSJJAG00000011272	-	86	94.595	Jaculus_jaculus
ENSORLG00020008216	snrpf	79	88.060	ENSJJAG00000004828	-	86	89.286	Jaculus_jaculus
ENSORLG00020008216	snrpf	86	97.260	ENSKMAG00000013566	snrpf	85	97.260	Kryptolebias_marmoratus
ENSORLG00020008216	snrpf	87	95.946	ENSLBEG00000008800	snrpf	86	95.946	Labrus_bergylta
ENSORLG00020008216	snrpf	87	94.595	ENSLACG00000002456	-	63	94.595	Latimeria_chalumnae
ENSORLG00020008216	snrpf	100	97.647	ENSLOCG00000015744	snrpf	99	97.647	Lepisosteus_oculatus
ENSORLG00020008216	snrpf	87	94.595	ENSLAFG00000017426	SNRPF	86	94.595	Loxodonta_africana
ENSORLG00020008216	snrpf	86	95.890	ENSMAMG00000016593	snrpf	86	95.890	Mastacembelus_armatus
ENSORLG00020008216	snrpf	86	97.260	ENSMZEG00005014701	snrpf	86	97.260	Maylandia_zebra
ENSORLG00020008216	snrpf	86	94.521	ENSMGAG00000011453	-	66	94.521	Meleagris_gallopavo
ENSORLG00020008216	snrpf	71	86.885	ENSMAUG00000010289	-	66	90.000	Mesocricetus_auratus
ENSORLG00020008216	snrpf	87	90.541	ENSMAUG00000008799	-	86	90.541	Mesocricetus_auratus
ENSORLG00020008216	snrpf	74	93.651	ENSMAUG00000019737	-	85	93.651	Mesocricetus_auratus
ENSORLG00020008216	snrpf	74	93.651	ENSMAUG00000016909	-	85	93.651	Mesocricetus_auratus
ENSORLG00020008216	snrpf	87	87.838	ENSMICG00000030494	-	59	87.838	Microcebus_murinus
ENSORLG00020008216	snrpf	87	94.595	ENSMICG00000012153	-	86	94.595	Microcebus_murinus
ENSORLG00020008216	snrpf	87	81.081	ENSMOCG00000022166	-	81	81.081	Microtus_ochrogaster
ENSORLG00020008216	snrpf	87	94.595	ENSMOCG00000020437	Snrpf	86	94.595	Microtus_ochrogaster
ENSORLG00020008216	snrpf	80	77.941	ENSMOCG00000020220	-	87	77.941	Microtus_ochrogaster
ENSORLG00020008216	snrpf	100	98.810	ENSMMOG00000007127	snrpf	100	98.810	Mola_mola
ENSORLG00020008216	snrpf	87	94.595	ENSMODG00000008091	SNRPF	65	94.595	Monodelphis_domestica
ENSORLG00020008216	snrpf	86	97.260	ENSMALG00000012328	snrpf	86	97.260	Monopterus_albus
ENSORLG00020008216	snrpf	87	94.595	MGP_CAROLIEiJ_G0015735	-	86	94.595	Mus_caroli
ENSORLG00020008216	snrpf	87	94.595	ENSMUSG00000020018	Snrpf	86	94.595	Mus_musculus
ENSORLG00020008216	snrpf	87	94.595	MGP_PahariEiJ_G0031350	Snrpf	86	94.595	Mus_pahari
ENSORLG00020008216	snrpf	87	94.595	MGP_SPRETEiJ_G0016553	Snrpf	86	94.595	Mus_spretus
ENSORLG00020008216	snrpf	87	94.595	ENSMPUG00000007176	-	66	94.595	Mustela_putorius_furo
ENSORLG00020008216	snrpf	87	94.595	ENSMLUG00000027932	-	70	94.595	Myotis_lucifugus
ENSORLG00020008216	snrpf	87	94.595	ENSMLUG00000013577	-	87	94.595	Myotis_lucifugus
ENSORLG00020008216	snrpf	87	94.595	ENSMLUG00000029201	-	70	94.595	Myotis_lucifugus
ENSORLG00020008216	snrpf	87	94.595	ENSMLUG00000026149	-	70	94.595	Myotis_lucifugus
ENSORLG00020008216	snrpf	100	76.471	ENSMLUG00000026269	-	70	74.324	Myotis_lucifugus
ENSORLG00020008216	snrpf	87	94.595	ENSNGAG00000024292	-	86	94.595	Nannospalax_galili
ENSORLG00020008216	snrpf	74	87.302	ENSNGAG00000005851	-	71	86.667	Nannospalax_galili
ENSORLG00020008216	snrpf	87	97.297	ENSNBRG00000011682	snrpf	76	97.297	Neolamprologus_brichardi
ENSORLG00020008216	snrpf	87	70.270	ENSMEUG00000000671	SNRPF	87	70.270	Notamacropus_eugenii
ENSORLG00020008216	snrpf	87	94.595	ENSODEG00000010328	-	86	94.595	Octodon_degus
ENSORLG00020008216	snrpf	87	94.595	ENSOCUG00000010925	SNRPF	65	94.595	Oryctolagus_cuniculus
ENSORLG00020008216	snrpf	100	100.000	ENSORLG00015007418	snrpf	100	100.000	Oryzias_latipes_hsok
ENSORLG00020008216	snrpf	99	98.810	ENSOMEG00000003018	snrpf	99	98.810	Oryzias_melastigma
ENSORLG00020008216	snrpf	87	93.243	ENSOGAG00000030323	-	86	93.243	Otolemur_garnettii
ENSORLG00020008216	snrpf	87	94.595	ENSOARG00000011853	-	64	94.595	Ovis_aries
ENSORLG00020008216	snrpf	92	71.795	ENSPPAG00000037479	-	89	70.270	Pan_paniscus
ENSORLG00020008216	snrpf	98	75.904	ENSPPAG00000037544	-	82	72.973	Pan_paniscus
ENSORLG00020008216	snrpf	98	74.699	ENSPPRG00000007449	-	76	74.324	Panthera_pardus
ENSORLG00020008216	snrpf	87	94.595	ENSPPRG00000005875	-	86	94.595	Panthera_pardus
ENSORLG00020008216	snrpf	98	77.108	ENSPTIG00000005117	-	88	74.324	Panthera_tigris_altaica
ENSORLG00020008216	snrpf	87	94.595	ENSPTIG00000007520	SNRPF	86	94.595	Panthera_tigris_altaica
ENSORLG00020008216	snrpf	92	71.795	ENSPTRG00000047717	-	89	70.270	Pan_troglodytes
ENSORLG00020008216	snrpf	98	75.904	ENSPTRG00000043814	-	82	72.973	Pan_troglodytes
ENSORLG00020008216	snrpf	87	97.297	ENSPKIG00000014784	snrpf	81	97.297	Paramormyrops_kingsleyae
ENSORLG00020008216	snrpf	87	94.595	ENSPSIG00000016462	SNRPF	86	94.595	Pelodiscus_sinensis
ENSORLG00020008216	snrpf	100	98.810	ENSPMGG00000023548	snrpf	100	98.810	Periophthalmus_magnuspinnatus
ENSORLG00020008216	snrpf	87	94.595	ENSPEMG00000023326	Snrpf	86	94.595	Peromyscus_maniculatus_bairdii
ENSORLG00020008216	snrpf	86	97.260	ENSPLAG00000023932	snrpf	86	97.260	Poecilia_latipinna
ENSORLG00020008216	snrpf	86	97.260	ENSPMEG00000003377	snrpf	86	97.260	Poecilia_mexicana
ENSORLG00020008216	snrpf	86	97.260	ENSPREG00000022635	snrpf	84	97.260	Poecilia_reticulata
ENSORLG00020008216	snrpf	87	94.595	ENSPPYG00000004847	-	86	94.595	Pongo_abelii
ENSORLG00020008216	snrpf	87	94.595	ENSPCOG00000023833	-	86	94.595	Propithecus_coquereli
ENSORLG00020008216	snrpf	87	94.595	ENSPVAG00000009036	SNRPF	86	94.595	Pteropus_vampyrus
ENSORLG00020008216	snrpf	86	97.260	ENSPNYG00000021712	snrpf	86	97.260	Pundamilia_nyererei
ENSORLG00020008216	snrpf	99	98.810	ENSPNAG00000019117	snrpf	99	98.810	Pygocentrus_nattereri
ENSORLG00020008216	snrpf	87	94.595	ENSRNOG00000005556	Snrpf	86	94.595	Rattus_norvegicus
ENSORLG00020008216	snrpf	87	91.892	ENSRBIG00000030414	-	86	91.892	Rhinopithecus_bieti
ENSORLG00020008216	snrpf	87	91.892	ENSRROG00000021975	-	86	91.892	Rhinopithecus_roxellana
ENSORLG00020008216	snrpf	82	57.746	YPR182W	SMX3	83	57.746	Saccharomyces_cerevisiae
ENSORLG00020008216	snrpf	87	74.026	ENSSBOG00000027638	-	87	74.026	Saimiri_boliviensis_boliviensis
ENSORLG00020008216	snrpf	87	94.595	ENSSBOG00000036179	-	86	94.595	Saimiri_boliviensis_boliviensis
ENSORLG00020008216	snrpf	87	79.730	ENSSBOG00000032297	-	85	79.730	Saimiri_boliviensis_boliviensis
ENSORLG00020008216	snrpf	87	94.595	ENSSBOG00000012868	-	86	94.595	Saimiri_boliviensis_boliviensis
ENSORLG00020008216	snrpf	87	94.595	ENSSHAG00000012294	SNRPF	67	94.595	Sarcophilus_harrisii
ENSORLG00020008216	snrpf	75	98.413	ENSSFOG00015021523	snrpf	94	98.413	Scleropages_formosus
ENSORLG00020008216	snrpf	100	98.824	ENSSMAG00000005533	snrpf	98	98.824	Scophthalmus_maximus
ENSORLG00020008216	snrpf	75	98.413	ENSSDUG00000016283	snrpf	75	98.413	Seriola_dumerili
ENSORLG00020008216	snrpf	86	97.260	ENSSLDG00000005119	snrpf	85	97.260	Seriola_lalandi_dorsalis
ENSORLG00020008216	snrpf	94	68.750	ENSSLDG00000003885	-	90	71.622	Seriola_lalandi_dorsalis
ENSORLG00020008216	snrpf	86	94.521	ENSSPUG00000014590	-	86	94.521	Sphenodon_punctatus
ENSORLG00020008216	snrpf	87	97.297	ENSSPAG00000003283	snrpf	84	97.297	Stegastes_partitus
ENSORLG00020008216	snrpf	87	94.595	ENSSSCG00000000895	SNRPF	86	94.595	Sus_scrofa
ENSORLG00020008216	snrpf	68	94.828	ENSTRUG00000014956	snrpf	84	94.828	Takifugu_rubripes
ENSORLG00020008216	snrpf	87	95.946	ENSTNIG00000012672	snrpf	86	95.946	Tetraodon_nigroviridis
ENSORLG00020008216	snrpf	87	70.270	ENSTTRG00000006070	SNRPF	86	70.270	Tursiops_truncatus
ENSORLG00020008216	snrpf	100	82.353	ENSUAMG00000001101	-	87	83.784	Ursus_americanus
ENSORLG00020008216	snrpf	87	94.595	ENSUAMG00000008176	-	86	94.595	Ursus_americanus
ENSORLG00020008216	snrpf	87	83.784	ENSUMAG00000006177	-	87	83.784	Ursus_maritimus
ENSORLG00020008216	snrpf	87	94.595	ENSUMAG00000003528	-	86	94.595	Ursus_maritimus
ENSORLG00020008216	snrpf	87	94.595	ENSVPAG00000008712	-	86	94.595	Vicugna_pacos
ENSORLG00020008216	snrpf	90	87.013	ENSVVUG00000023821	-	95	86.486	Vulpes_vulpes
ENSORLG00020008216	snrpf	87	73.684	ENSXETG00000021630	snrpf	87	71.053	Xenopus_tropicalis
ENSORLG00020008216	snrpf	86	97.260	ENSXCOG00000013860	snrpf	84	97.260	Xiphophorus_couchianus
ENSORLG00020008216	snrpf	86	97.260	ENSXMAG00000015448	snrpf	86	97.260	Xiphophorus_maculatus