EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020009351 (Gene tree)
Gene ID: -
Gene Symbol: si:ch1073-335m2.2
Alias: -
Full Name: spen family transcriptional repressor
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 21661 bases
Position: chr5:1753760-1775420
Accession: 101160467
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020008448	RRM_5	PF13893.6	1.7e-08	1	2
ENSORLP00020008448	RRM_5	PF13893.6	1.7e-08	2	2
ENSORLP00020008448	RRM_1	PF00076.22	2.3e-43	1	3
ENSORLP00020008448	RRM_1	PF00076.22	2.3e-43	2	3
ENSORLP00020008448	RRM_1	PF00076.22	2.3e-43	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020001158	-	9709	XM_004086141	ENSORLP00020008448	3173 (aa)	XP_004086189	-

Gene Model

Click here to download ENSORLG00020009351's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020009351's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020009351	si:ch1073-335m2.2	79	82.249	ENSORLG00020007735	-	89	82.249

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020009351	si:ch1073-335m2.2	86	68.037	ENSG00000065526	SPEN	85	85.259	Homo_sapiens
ENSORLG00020009351	si:ch1073-335m2.2	99	78.919	ENSAPOG00000009853	-	96	78.075	Acanthochromis_polyacanthus
ENSORLG00020009351	si:ch1073-335m2.2	100	73.853	ENSAPOG00000011411	si:ch1073-335m2.2	100	73.884	Acanthochromis_polyacanthus
ENSORLG00020009351	si:ch1073-335m2.2	89	71.374	ENSAOCG00000008077	si:ch1073-335m2.2	99	71.128	Amphiprion_ocellaris
ENSORLG00020009351	si:ch1073-335m2.2	99	78.919	ENSAOCG00000014505	-	51	78.075	Amphiprion_ocellaris
ENSORLG00020009351	si:ch1073-335m2.2	100	73.144	ENSAPEG00000013515	si:ch1073-335m2.2	100	73.144	Amphiprion_percula
ENSORLG00020009351	si:ch1073-335m2.2	99	78.919	ENSAPEG00000010288	-	51	78.075	Amphiprion_percula
ENSORLG00020009351	si:ch1073-335m2.2	100	70.757	ENSATEG00000007674	si:ch1073-335m2.2	100	70.962	Anabas_testudineus
ENSORLG00020009351	si:ch1073-335m2.2	62	82.081	ENSACAG00000013761	SPEN	59	82.081	Anolis_carolinensis
ENSORLG00020009351	si:ch1073-335m2.2	75	74.372	ENSACLG00000016922	-	96	64.530	Astatotilapia_calliptera
ENSORLG00020009351	si:ch1073-335m2.2	100	69.560	ENSACLG00000021433	si:ch1073-335m2.2	100	69.779	Astatotilapia_calliptera
ENSORLG00020009351	si:ch1073-335m2.2	99	77.714	ENSAMXG00000012485	spen	93	77.540	Astyanax_mexicanus
ENSORLG00020009351	si:ch1073-335m2.2	88	59.140	ENSBTAG00000018729	SPEN	72	81.871	Bos_taurus
ENSORLG00020009351	si:ch1073-335m2.2	86	65.254	ENSCJAG00000008527	SPEN	76	81.871	Callithrix_jacchus
ENSORLG00020009351	si:ch1073-335m2.2	88	64.730	ENSCHIG00000025070	SPEN	62	82.456	Capra_hircus
ENSORLG00020009351	si:ch1073-335m2.2	83	81.657	ENSCAPG00000013803	SPEN	76	81.657	Cavia_aperea
ENSORLG00020009351	si:ch1073-335m2.2	83	81.657	ENSCPOG00000014036	SPEN	69	81.657	Cavia_porcellus
ENSORLG00020009351	si:ch1073-335m2.2	86	65.254	ENSCCAG00000020258	SPEN	66	81.871	Cebus_capucinus
ENSORLG00020009351	si:ch1073-335m2.2	83	81.481	ENSCATG00000015079	SPEN	76	81.871	Cercocebus_atys
ENSORLG00020009351	si:ch1073-335m2.2	87	56.655	ENSCLAG00000002018	SPEN	71	81.657	Chinchilla_lanigera
ENSORLG00020009351	si:ch1073-335m2.2	86	63.008	ENSCANG00000034547	SPEN	76	81.871	Colobus_angolensis_palliatus
ENSORLG00020009351	si:ch1073-335m2.2	100	70.075	ENSCVAG00000009075	si:ch1073-335m2.2	100	70.012	Cyprinodon_variegatus
ENSORLG00020009351	si:ch1073-335m2.2	60	58.258	ENSDARG00000074332	si:ch1073-335m2.2	61	57.927	Danio_rerio
ENSORLG00020009351	si:ch1073-335m2.2	95	73.333	ENSDARG00000074245	spen	100	81.481	Danio_rerio
ENSORLG00020009351	si:ch1073-335m2.2	86	64.315	ENSDNOG00000041948	SPEN	76	81.871	Dasypus_novemcinctus
ENSORLG00020009351	si:ch1073-335m2.2	87	63.636	ENSDORG00000023909	Spen	75	81.871	Dipodomys_ordii
ENSORLG00020009351	si:ch1073-335m2.2	100	59.522	ENSELUG00000007726	si:ch1073-335m2.2	61	63.089	Esox_lucius
ENSORLG00020009351	si:ch1073-335m2.2	59	82.456	ENSFALG00000003551	SPEN	64	82.456	Ficedula_albicollis
ENSORLG00020009351	si:ch1073-335m2.2	84	81.657	ENSFDAG00000010212	SPEN	79	81.657	Fukomys_damarensis
ENSORLG00020009351	si:ch1073-335m2.2	100	68.630	ENSFHEG00000004544	si:ch1073-335m2.2	100	68.599	Fundulus_heteroclitus
ENSORLG00020009351	si:ch1073-335m2.2	100	62.344	ENSGMOG00000008156	si:ch1073-335m2.2	100	62.156	Gadus_morhua
ENSORLG00020009351	si:ch1073-335m2.2	99	82.840	ENSGAFG00000015819	-	96	66.667	Gambusia_affinis
ENSORLG00020009351	si:ch1073-335m2.2	100	70.109	ENSGAFG00000021570	si:ch1073-335m2.2	100	69.922	Gambusia_affinis
ENSORLG00020009351	si:ch1073-335m2.2	99	78.919	ENSGACG00000005341	-	51	78.075	Gasterosteus_aculeatus
ENSORLG00020009351	si:ch1073-335m2.2	100	67.394	ENSGACG00000001176	si:ch1073-335m2.2	100	67.373	Gasterosteus_aculeatus
ENSORLG00020009351	si:ch1073-335m2.2	91	80.226	ENSGAGG00000020785	SPEN	85	80.226	Gopherus_agassizii
ENSORLG00020009351	si:ch1073-335m2.2	86	68.037	ENSGGOG00000012041	SPEN	79	58.696	Gorilla_gorilla
ENSORLG00020009351	si:ch1073-335m2.2	100	69.800	ENSHBUG00000023253	si:ch1073-335m2.2	100	69.988	Haplochromis_burtoni
ENSORLG00020009351	si:ch1073-335m2.2	75	74.874	ENSHBUG00000020626	-	95	74.874	Haplochromis_burtoni
ENSORLG00020009351	si:ch1073-335m2.2	67	62.151	ENSHGLG00000019259	SPEN	56	82.249	Heterocephalus_glaber_female
ENSORLG00020009351	si:ch1073-335m2.2	64	62.151	ENSHGLG00100019294	SPEN	55	82.249	Heterocephalus_glaber_male
ENSORLG00020009351	si:ch1073-335m2.2	97	65.311	ENSHCOG00000006004	si:ch1073-335m2.2	99	65.320	Hippocampus_comes
ENSORLG00020009351	si:ch1073-335m2.2	93	56.921	ENSIPUG00000018212	si:ch1073-335m2.2	99	53.724	Ictalurus_punctatus
ENSORLG00020009351	si:ch1073-335m2.2	63	81.871	ENSSTOG00000021428	SPEN	60	81.871	Ictidomys_tridecemlineatus
ENSORLG00020009351	si:ch1073-335m2.2	88	56.655	ENSJJAG00000010882	Spen	78	80.702	Jaculus_jaculus
ENSORLG00020009351	si:ch1073-335m2.2	100	71.737	ENSKMAG00000021725	si:ch1073-335m2.2	100	71.517	Kryptolebias_marmoratus
ENSORLG00020009351	si:ch1073-335m2.2	100	67.797	ENSKMAG00000003882	-	97	67.797	Kryptolebias_marmoratus
ENSORLG00020009351	si:ch1073-335m2.2	83	81.065	ENSLBEG00000019129	-	79	81.065	Labrus_bergylta
ENSORLG00020009351	si:ch1073-335m2.2	100	69.392	ENSLBEG00000020855	si:ch1073-335m2.2	100	69.329	Labrus_bergylta
ENSORLG00020009351	si:ch1073-335m2.2	53	83.041	ENSLACG00000003258	SPEN	78	83.041	Latimeria_chalumnae
ENSORLG00020009351	si:ch1073-335m2.2	76	65.812	ENSLOCG00000007896	si:ch1073-335m2.2	88	81.395	Lepisosteus_oculatus
ENSORLG00020009351	si:ch1073-335m2.2	86	64.730	ENSLAFG00000004524	SPEN	77	82.249	Loxodonta_africana
ENSORLG00020009351	si:ch1073-335m2.2	86	64.583	ENSMFAG00000041974	SPEN	76	81.871	Macaca_fascicularis
ENSORLG00020009351	si:ch1073-335m2.2	86	64.583	ENSMMUG00000008026	SPEN	76	81.871	Macaca_mulatta
ENSORLG00020009351	si:ch1073-335m2.2	86	64.583	ENSMNEG00000042402	SPEN	76	81.871	Macaca_nemestrina
ENSORLG00020009351	si:ch1073-335m2.2	86	64.583	ENSMLEG00000039293	SPEN	76	81.871	Mandrillus_leucophaeus
ENSORLG00020009351	si:ch1073-335m2.2	100	71.236	ENSMAMG00000023870	si:ch1073-335m2.2	100	71.266	Mastacembelus_armatus
ENSORLG00020009351	si:ch1073-335m2.2	100	69.569	ENSMZEG00005011762	si:ch1073-335m2.2	100	69.819	Maylandia_zebra
ENSORLG00020009351	si:ch1073-335m2.2	64	74.372	ENSMZEG00005021491	-	95	64.530	Maylandia_zebra
ENSORLG00020009351	si:ch1073-335m2.2	93	81.871	ENSMAUG00000008318	Spen	89	81.871	Mesocricetus_auratus
ENSORLG00020009351	si:ch1073-335m2.2	86	81.871	ENSMICG00000030994	SPEN	77	81.871	Microcebus_murinus
ENSORLG00020009351	si:ch1073-335m2.2	89	66.102	ENSMOCG00000016083	Spen	70	81.871	Microtus_ochrogaster
ENSORLG00020009351	si:ch1073-335m2.2	100	68.792	ENSMMOG00000021742	si:ch1073-335m2.2	100	68.752	Mola_mola
ENSORLG00020009351	si:ch1073-335m2.2	99	78.378	ENSMALG00000008625	-	98	65.546	Monopterus_albus
ENSORLG00020009351	si:ch1073-335m2.2	78	63.095	MGP_CAROLIEiJ_G0026745	Spen	83	81.871	Mus_caroli
ENSORLG00020009351	si:ch1073-335m2.2	78	62.698	ENSMUSG00000040761	Spen	81	76.190	Mus_musculus
ENSORLG00020009351	si:ch1073-335m2.2	84	81.871	MGP_PahariEiJ_G0029076	Spen	80	81.871	Mus_pahari
ENSORLG00020009351	si:ch1073-335m2.2	78	63.241	MGP_SPRETEiJ_G0027724	Spen	81	78.333	Mus_spretus
ENSORLG00020009351	si:ch1073-335m2.2	82	80.208	ENSMLUG00000010144	SPEN	99	66.544	Myotis_lucifugus
ENSORLG00020009351	si:ch1073-335m2.2	94	65.678	ENSNGAG00000000641	Spen	84	81.287	Nannospalax_galili
ENSORLG00020009351	si:ch1073-335m2.2	100	68.873	ENSNBRG00000005733	si:ch1073-335m2.2	100	69.063	Neolamprologus_brichardi
ENSORLG00020009351	si:ch1073-335m2.2	84	75.377	ENSNBRG00000022090	-	94	75.377	Neolamprologus_brichardi
ENSORLG00020009351	si:ch1073-335m2.2	88	56.997	ENSNLEG00000007652	SPEN	77	81.287	Nomascus_leucogenys
ENSORLG00020009351	si:ch1073-335m2.2	76	77.895	ENSMEUG00000002422	SPEN	65	77.895	Notamacropus_eugenii
ENSORLG00020009351	si:ch1073-335m2.2	58	64.050	ENSOPRG00000015800	SPEN	66	81.871	Ochotona_princeps
ENSORLG00020009351	si:ch1073-335m2.2	100	74.874	ENSONIG00000006573	-	97	74.874	Oreochromis_niloticus
ENSORLG00020009351	si:ch1073-335m2.2	87	68.468	ENSOCUG00000010840	SPEN	78	81.871	Oryctolagus_cuniculus
ENSORLG00020009351	si:ch1073-335m2.2	100	98.645	ENSORLG00000018414	si:ch1073-335m2.2	100	98.645	Oryzias_latipes
ENSORLG00020009351	si:ch1073-335m2.2	100	98.582	ENSORLG00015005537	si:ch1073-335m2.2	100	98.582	Oryzias_latipes_hsok
ENSORLG00020009351	si:ch1073-335m2.2	100	90.752	ENSOMEG00000004509	si:ch1073-335m2.2	100	90.815	Oryzias_melastigma
ENSORLG00020009351	si:ch1073-335m2.2	52	82.840	ENSOMEG00000007639	-	51	82.840	Oryzias_melastigma
ENSORLG00020009351	si:ch1073-335m2.2	76	68.037	ENSPPAG00000035690	SPEN	76	81.287	Pan_paniscus
ENSORLG00020009351	si:ch1073-335m2.2	86	64.583	ENSPANG00000006293	SPEN	76	81.871	Papio_anubis
ENSORLG00020009351	si:ch1073-335m2.2	100	76.382	ENSPKIG00000002617	SPEN	95	76.382	Paramormyrops_kingsleyae
ENSORLG00020009351	si:ch1073-335m2.2	97	92.857	ENSPKIG00000010492	si:ch1073-335m2.2	97	92.857	Paramormyrops_kingsleyae
ENSORLG00020009351	si:ch1073-335m2.2	84	81.871	ENSPEMG00000022997	Spen	78	81.871	Peromyscus_maniculatus_bairdii
ENSORLG00020009351	si:ch1073-335m2.2	100	69.669	ENSPFOG00000017986	si:ch1073-335m2.2	100	69.657	Poecilia_formosa
ENSORLG00020009351	si:ch1073-335m2.2	100	70.105	ENSPLAG00000016625	si:ch1073-335m2.2	100	69.950	Poecilia_latipinna
ENSORLG00020009351	si:ch1073-335m2.2	100	70.009	ENSPMEG00000002674	si:ch1073-335m2.2	100	70.028	Poecilia_mexicana
ENSORLG00020009351	si:ch1073-335m2.2	100	70.142	ENSPREG00000005357	si:ch1073-335m2.2	100	70.204	Poecilia_reticulata
ENSORLG00020009351	si:ch1073-335m2.2	86	64.167	ENSPPYG00000001834	SPEN	76	81.287	Pongo_abelii
ENSORLG00020009351	si:ch1073-335m2.2	88	54.730	ENSPCOG00000021735	SPEN	76	78.488	Propithecus_coquereli
ENSORLG00020009351	si:ch1073-335m2.2	63	80.117	ENSPVAG00000013794	SPEN	62	80.117	Pteropus_vampyrus
ENSORLG00020009351	si:ch1073-335m2.2	100	69.591	ENSPNYG00000009042	si:ch1073-335m2.2	100	69.810	Pundamilia_nyererei
ENSORLG00020009351	si:ch1073-335m2.2	75	74.874	ENSPNYG00000012379	-	95	74.874	Pundamilia_nyererei
ENSORLG00020009351	si:ch1073-335m2.2	99	78.613	ENSPNAG00000020795	spen	97	74.227	Pygocentrus_nattereri
ENSORLG00020009351	si:ch1073-335m2.2	100	55.536	ENSPNAG00000011452	si:ch1073-335m2.2	100	55.348	Pygocentrus_nattereri
ENSORLG00020009351	si:ch1073-335m2.2	66	64.082	ENSRNOG00000033556	Spen	55	81.871	Rattus_norvegicus
ENSORLG00020009351	si:ch1073-335m2.2	86	63.008	ENSRBIG00000039654	SPEN	76	81.871	Rhinopithecus_bieti
ENSORLG00020009351	si:ch1073-335m2.2	86	63.008	ENSRROG00000035686	SPEN	76	81.871	Rhinopithecus_roxellana
ENSORLG00020009351	si:ch1073-335m2.2	99	85.380	ENSSFOG00015010267	si:ch1073-335m2.2	51	78.238	Scleropages_formosus
ENSORLG00020009351	si:ch1073-335m2.2	100	70.986	ENSSMAG00000000125	si:ch1073-335m2.2	100	71.200	Scophthalmus_maximus
ENSORLG00020009351	si:ch1073-335m2.2	99	79.459	ENSSMAG00000008996	-	96	78.610	Scophthalmus_maximus
ENSORLG00020009351	si:ch1073-335m2.2	100	73.152	ENSSDUG00000008416	si:ch1073-335m2.2	100	73.205	Seriola_dumerili
ENSORLG00020009351	si:ch1073-335m2.2	74	79.459	ENSSLDG00000012950	-	91	65.909	Seriola_lalandi_dorsalis
ENSORLG00020009351	si:ch1073-335m2.2	60	74.139	ENSSLDG00000023347	si:ch1073-335m2.2	60	74.421	Seriola_lalandi_dorsalis
ENSORLG00020009351	si:ch1073-335m2.2	63	86.111	ENSSPUG00000001866	-	83	80.226	Sphenodon_punctatus
ENSORLG00020009351	si:ch1073-335m2.2	100	74.731	ENSSPAG00000012454	si:ch1073-335m2.2	100	74.761	Stegastes_partitus
ENSORLG00020009351	si:ch1073-335m2.2	80	48.549	ENSTRUG00000024350	-	53	65.859	Takifugu_rubripes
ENSORLG00020009351	si:ch1073-335m2.2	87	64.583	ENSTRUG00000021008	si:ch1073-335m2.2	100	64.375	Takifugu_rubripes
ENSORLG00020009351	si:ch1073-335m2.2	100	66.870	ENSTNIG00000014666	si:ch1073-335m2.2	100	66.707	Tetraodon_nigroviridis
ENSORLG00020009351	si:ch1073-335m2.2	64	81.871	ENSTBEG00000003628	SPEN	53	81.871	Tupaia_belangeri
ENSORLG00020009351	si:ch1073-335m2.2	77	92.857	ENSVVUG00000028951	SPEN	52	92.857	Vulpes_vulpes
ENSORLG00020009351	si:ch1073-335m2.2	100	66.656	ENSXCOG00000004516	si:ch1073-335m2.2	100	66.759	Xiphophorus_couchianus
ENSORLG00020009351	si:ch1073-335m2.2	99	78.771	ENSXMAG00000021384	-	96	66.245	Xiphophorus_maculatus
ENSORLG00020009351	si:ch1073-335m2.2	100	69.829	ENSXMAG00000029887	si:ch1073-335m2.2	100	69.929	Xiphophorus_maculatus