EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020009728 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: transcription activator BRG1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 26775 bases
Position: chr1:9564176-9590950
Accession: 101162023
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020026903	ResIII	PF04851.15	1.5e-08	1	1
ENSORLP00020008784	ResIII	PF04851.15	1.9e-08	1	1
ENSORLP00020008784	BRK	PF07533.16	6.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020000601	-	7267	XM_020702324	ENSORLP00020008784	1661 (aa)	XP_020557983	-
ENSORLT00020000726	-	1941	-	ENSORLP00020026897	504 (aa)	-	-
ENSORLT00020000704	-	4143	-	ENSORLP00020026903	1380 (aa)	-	-

Gene Model

Click here to download ENSORLG00020009728's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020009728's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020009728	-	98	80.069	ENSORLG00020004611	smarca4a	98	85.861

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020009728	-	97	87.457	ENSG00000127616	SMARCA4	99	95.652	Homo_sapiens
ENSORLG00020009728	-	98	91.385	ENSAPOG00000004542	SMARCA4	95	93.981	Acanthochromis_polyacanthus
ENSORLG00020009728	-	76	86.239	ENSAPOG00000003509	smarca4a	98	86.874	Acanthochromis_polyacanthus
ENSORLG00020009728	-	97	82.459	ENSAMEG00000010868	SMARCA4	95	79.589	Ailuropoda_melanoleuca
ENSORLG00020009728	-	98	91.439	ENSACIG00000003035	-	87	93.667	Amphilophus_citrinellus
ENSORLG00020009728	-	98	82.305	ENSACIG00000021550	smarca4a	95	85.110	Amphilophus_citrinellus
ENSORLG00020009728	-	98	87.509	ENSAOCG00000009450	-	87	96.731	Amphiprion_ocellaris
ENSORLG00020009728	-	94	84.164	ENSAOCG00000019167	smarca4a	96	83.667	Amphiprion_ocellaris
ENSORLG00020009728	-	94	84.238	ENSAPEG00000015559	smarca4a	96	83.742	Amphiprion_percula
ENSORLG00020009728	-	100	93.472	ENSAPEG00000023108	-	97	93.742	Amphiprion_percula
ENSORLG00020009728	-	90	91.156	ENSATEG00000011524	smarca4a	95	84.707	Anabas_testudineus
ENSORLG00020009728	-	99	93.476	ENSATEG00000001094	-	94	93.691	Anabas_testudineus
ENSORLG00020009728	-	97	87.306	ENSANAG00000036991	SMARCA4	95	80.299	Aotus_nancymaae
ENSORLG00020009728	-	99	83.354	ENSACLG00000000163	smarca4a	93	85.275	Astatotilapia_calliptera
ENSORLG00020009728	-	98	91.655	ENSACLG00000008638	-	95	94.401	Astatotilapia_calliptera
ENSORLG00020009728	-	98	84.654	ENSAMXG00000021023	smarca4a	97	85.470	Astyanax_mexicanus
ENSORLG00020009728	-	98	87.179	ENSAMXG00000011238	-	96	87.231	Astyanax_mexicanus
ENSORLG00020009728	-	97	87.889	ENSBTAG00000019220	SMARCA4	95	83.680	Bos_taurus
ENSORLG00020009728	-	97	86.660	ENSCJAG00000005936	SMARCA4	95	79.735	Callithrix_jacchus
ENSORLG00020009728	-	97	87.803	ENSCAFG00000017584	SMARCA4	95	83.553	Canis_familiaris
ENSORLG00020009728	-	97	87.803	ENSCAFG00020024620	SMARCA4	94	83.553	Canis_lupus_dingo
ENSORLG00020009728	-	98	79.671	ENSCHIG00000015318	SMARCA4	95	79.924	Capra_hircus
ENSORLG00020009728	-	99	83.283	ENSTSYG00000012966	SMARCA4	95	83.753	Carlito_syrichta
ENSORLG00020009728	-	98	80.374	ENSCAPG00000015932	SMARCA4	89	89.792	Cavia_aperea
ENSORLG00020009728	-	99	83.485	ENSCPOG00000015549	SMARCA4	95	83.679	Cavia_porcellus
ENSORLG00020009728	-	99	79.917	ENSCCAG00000031660	SMARCA4	94	80.587	Cebus_capucinus
ENSORLG00020009728	-	97	87.457	ENSCATG00000029530	SMARCA4	95	83.553	Cercocebus_atys
ENSORLG00020009728	-	99	83.463	ENSCLAG00000011946	SMARCA4	95	83.879	Chinchilla_lanigera
ENSORLG00020009728	-	99	82.311	ENSCPBG00000009994	SMARCA4	95	83.543	Chrysemys_picta_bellii
ENSORLG00020009728	-	97	87.457	ENSCANG00000036013	SMARCA4	95	83.553	Colobus_angolensis_palliatus
ENSORLG00020009728	-	97	87.716	ENSCGRG00001016732	Smarca4	95	83.553	Cricetulus_griseus_chok1gshd
ENSORLG00020009728	-	97	87.716	ENSCGRG00000017242	Smarca4	95	83.553	Cricetulus_griseus_crigri
ENSORLG00020009728	-	95	83.608	ENSCSEG00000014771	smarca4a	95	84.194	Cynoglossus_semilaevis
ENSORLG00020009728	-	95	83.302	ENSCVAG00000006979	smarca4a	96	83.889	Cyprinodon_variegatus
ENSORLG00020009728	-	99	87.288	ENSCVAG00000003018	-	89	93.213	Cyprinodon_variegatus
ENSORLG00020009728	-	97	84.761	ENSDARG00000077226	smarca4a	95	85.209	Danio_rerio
ENSORLG00020009728	-	92	84.183	ENSDARG00000104339	SMARCA4	94	84.736	Danio_rerio
ENSORLG00020009728	-	96	80.535	ENSDNOG00000048847	SMARCA4	90	90.141	Dasypus_novemcinctus
ENSORLG00020009728	-	92	83.486	ENSDORG00000002544	Smarca4	87	79.025	Dipodomys_ordii
ENSORLG00020009728	-	97	72.889	ENSETEG00000013361	SMARCA4	90	71.873	Echinops_telfairi
ENSORLG00020009728	-	95	90.897	ENSEASG00005006167	SMARCA4	95	81.695	Equus_asinus_asinus
ENSORLG00020009728	-	97	87.630	ENSECAG00000008334	SMARCA4	95	83.490	Equus_caballus
ENSORLG00020009728	-	99	82.842	ENSELUG00000010247	smarca4a	95	83.105	Esox_lucius
ENSORLG00020009728	-	98	80.534	ENSELUG00000023232	-	94	85.452	Esox_lucius
ENSORLG00020009728	-	97	87.662	ENSFCAG00000004894	SMARCA4	95	83.521	Felis_catus
ENSORLG00020009728	-	92	81.348	ENSFALG00000004208	SMARCA4	92	81.884	Ficedula_albicollis
ENSORLG00020009728	-	97	87.392	ENSFDAG00000012237	SMARCA4	93	84.100	Fukomys_damarensis
ENSORLG00020009728	-	94	83.585	ENSFHEG00000010182	smarca4a	95	83.437	Fundulus_heteroclitus
ENSORLG00020009728	-	100	93.489	ENSFHEG00000007902	-	97	93.453	Fundulus_heteroclitus
ENSORLG00020009728	-	87	79.817	ENSGMOG00000002649	smarca4a	85	80.655	Gadus_morhua
ENSORLG00020009728	-	90	84.147	ENSGMOG00000005756	-	90	83.362	Gadus_morhua
ENSORLG00020009728	-	78	87.234	ENSGALG00000047145	SMARCA4	95	81.633	Gallus_gallus
ENSORLG00020009728	-	87	86.992	ENSGAFG00000014900	smarca4a	96	87.500	Gambusia_affinis
ENSORLG00020009728	-	98	90.138	ENSGAFG00000008827	-	98	85.340	Gambusia_affinis
ENSORLG00020009728	-	99	85.506	ENSGACG00000016033	-	97	85.507	Gasterosteus_aculeatus
ENSORLG00020009728	-	95	83.932	ENSGACG00000006691	smarca4a	95	83.407	Gasterosteus_aculeatus
ENSORLG00020009728	-	99	82.458	ENSGAGG00000016757	SMARCA4	95	83.700	Gopherus_agassizii
ENSORLG00020009728	-	97	87.457	ENSGGOG00000009882	SMARCA4	95	83.553	Gorilla_gorilla
ENSORLG00020009728	-	100	94.768	ENSHBUG00000005447	-	97	94.963	Haplochromis_burtoni
ENSORLG00020009728	-	99	83.417	ENSHBUG00000021172	smarca4a	95	84.896	Haplochromis_burtoni
ENSORLG00020009728	-	97	87.489	ENSHGLG00000010519	SMARCA4	95	83.260	Heterocephalus_glaber_female
ENSORLG00020009728	-	97	86.724	ENSHGLG00100013774	SMARCA4	95	83.135	Heterocephalus_glaber_male
ENSORLG00020009728	-	98	80.930	ENSHCOG00000009510	smarca4a	93	84.610	Hippocampus_comes
ENSORLG00020009728	-	99	84.967	ENSIPUG00000006107	smarca4a	95	85.515	Ictalurus_punctatus
ENSORLG00020009728	-	97	85.451	ENSIPUG00000016346	-	88	90.533	Ictalurus_punctatus
ENSORLG00020009728	-	97	87.716	ENSSTOG00000007939	SMARCA4	95	83.553	Ictidomys_tridecemlineatus
ENSORLG00020009728	-	99	81.722	ENSJJAG00000012877	Smarca4	95	81.377	Jaculus_jaculus
ENSORLG00020009728	-	96	82.814	ENSKMAG00000011931	smarca4a	95	84.151	Kryptolebias_marmoratus
ENSORLG00020009728	-	97	93.584	ENSKMAG00000019518	-	96	95.740	Kryptolebias_marmoratus
ENSORLG00020009728	-	94	93.293	ENSLBEG00000020655	-	94	87.714	Labrus_bergylta
ENSORLG00020009728	-	95	81.640	ENSLBEG00000017383	smarca4a	94	80.757	Labrus_bergylta
ENSORLG00020009728	-	53	75.816	ENSLACG00000015309	SMARCA4	94	82.714	Latimeria_chalumnae
ENSORLG00020009728	-	99	80.667	ENSLOCG00000007820	smarca4a	88	84.664	Lepisosteus_oculatus
ENSORLG00020009728	-	97	87.575	ENSLAFG00000001433	SMARCA4	95	83.459	Loxodonta_africana
ENSORLG00020009728	-	97	87.457	ENSMFAG00000032146	SMARCA4	94	83.553	Macaca_fascicularis
ENSORLG00020009728	-	97	87.457	ENSMMUG00000012042	SMARCA4	97	90.094	Macaca_mulatta
ENSORLG00020009728	-	97	87.457	ENSMNEG00000028512	SMARCA4	95	83.532	Macaca_nemestrina
ENSORLG00020009728	-	97	87.457	ENSMLEG00000034976	SMARCA4	95	83.333	Mandrillus_leucophaeus
ENSORLG00020009728	-	96	87.517	ENSMAMG00000009256	smarca4a	98	89.429	Mastacembelus_armatus
ENSORLG00020009728	-	100	93.381	ENSMAMG00000002841	-	97	93.588	Mastacembelus_armatus
ENSORLG00020009728	-	95	95.000	ENSMZEG00005023861	-	95	95.213	Maylandia_zebra
ENSORLG00020009728	-	99	83.417	ENSMZEG00005003889	smarca4a	95	84.896	Maylandia_zebra
ENSORLG00020009728	-	97	87.489	ENSMAUG00000020731	Smarca4	95	83.459	Mesocricetus_auratus
ENSORLG00020009728	-	97	87.575	ENSMICG00000009806	SMARCA4	95	83.521	Microcebus_murinus
ENSORLG00020009728	-	97	87.403	ENSMOCG00000022209	Smarca4	95	83.396	Microtus_ochrogaster
ENSORLG00020009728	-	98	78.947	ENSMMOG00000007571	smarca4a	94	83.738	Mola_mola
ENSORLG00020009728	-	98	92.868	ENSMMOG00000008466	-	85	92.852	Mola_mola
ENSORLG00020009728	-	99	81.984	ENSMODG00000006287	SMARCA4	95	81.650	Monodelphis_domestica
ENSORLG00020009728	-	98	80.972	ENSMALG00000003388	smarca4a	95	84.538	Monopterus_albus
ENSORLG00020009728	-	98	90.517	ENSMALG00000021534	-	96	90.726	Monopterus_albus
ENSORLG00020009728	-	97	87.716	MGP_CAROLIEiJ_G0031879	Smarca4	100	85.782	Mus_caroli
ENSORLG00020009728	-	97	87.716	ENSMUSG00000032187	Smarca4	99	85.782	Mus_musculus
ENSORLG00020009728	-	99	83.573	MGP_PahariEiJ_G0014745	Smarca4	100	86.177	Mus_pahari
ENSORLG00020009728	-	97	87.716	MGP_SPRETEiJ_G0033003	Smarca4	100	85.782	Mus_spretus
ENSORLG00020009728	-	97	87.716	ENSMPUG00000005711	SMARCA4	95	83.553	Mustela_putorius_furo
ENSORLG00020009728	-	96	87.889	ENSMLUG00000004491	-	95	83.741	Myotis_lucifugus
ENSORLG00020009728	-	99	83.184	ENSNGAG00000021852	Smarca4	95	83.396	Nannospalax_galili
ENSORLG00020009728	-	98	92.043	ENSNBRG00000018865	-	96	91.716	Neolamprologus_brichardi
ENSORLG00020009728	-	94	84.387	ENSNBRG00000011457	smarca4a	93	82.372	Neolamprologus_brichardi
ENSORLG00020009728	-	97	85.974	ENSNLEG00000012389	SMARCA4	91	80.483	Nomascus_leucogenys
ENSORLG00020009728	-	87	93.103	ENSOPRG00000000885	-	76	93.103	Ochotona_princeps
ENSORLG00020009728	-	99	81.807	ENSODEG00000017127	SMARCA4	95	81.375	Octodon_degus
ENSORLG00020009728	-	99	94.886	ENSONIG00000018040	-	97	95.146	Oreochromis_niloticus
ENSORLG00020009728	-	98	82.847	ENSONIG00000008196	smarca4a	95	84.896	Oreochromis_niloticus
ENSORLG00020009728	-	98	78.261	ENSOCUG00000001787	SMARCA4	94	77.813	Oryctolagus_cuniculus
ENSORLG00020009728	-	98	80.069	ENSORLG00000015452	smarca4a	95	83.774	Oryzias_latipes
ENSORLG00020009728	-	100	99.759	ENSORLG00000003955	-	100	99.759	Oryzias_latipes
ENSORLG00020009728	-	98	79.931	ENSORLG00015016560	smarca4a	95	83.711	Oryzias_latipes_hsok
ENSORLG00020009728	-	100	99.398	ENSORLG00015007739	-	100	99.398	Oryzias_latipes_hsok
ENSORLG00020009728	-	100	98.737	ENSOMEG00000016626	-	100	98.737	Oryzias_melastigma
ENSORLG00020009728	-	98	81.637	ENSOMEG00000007486	smarca4a	95	84.121	Oryzias_melastigma
ENSORLG00020009728	-	97	85.912	ENSOGAG00000016148	SMARCA4	96	81.938	Otolemur_garnettii
ENSORLG00020009728	-	97	87.813	ENSOARG00000017454	SMARCA4	94	84.026	Ovis_aries
ENSORLG00020009728	-	97	87.457	ENSPPAG00000043191	SMARCA4	95	83.553	Pan_paniscus
ENSORLG00020009728	-	97	87.662	ENSPPRG00000000064	SMARCA4	95	83.521	Panthera_pardus
ENSORLG00020009728	-	93	85.263	ENSPTIG00000017447	SMARCA4	95	78.031	Panthera_tigris_altaica
ENSORLG00020009728	-	97	87.457	ENSPTRG00000010488	SMARCA4	95	83.553	Pan_troglodytes
ENSORLG00020009728	-	97	87.457	ENSPANG00000011042	SMARCA4	94	83.658	Papio_anubis
ENSORLG00020009728	-	95	86.490	ENSPKIG00000007770	SMARCA4	95	86.229	Paramormyrops_kingsleyae
ENSORLG00020009728	-	96	85.144	ENSPKIG00000010087	-	96	85.940	Paramormyrops_kingsleyae
ENSORLG00020009728	-	98	78.091	ENSPSIG00000005547	SMARCA4	95	78.475	Pelodiscus_sinensis
ENSORLG00020009728	-	97	87.489	ENSPEMG00000020389	Smarca4	95	83.459	Peromyscus_maniculatus_bairdii
ENSORLG00020009728	-	99	83.433	ENSPCIG00000017138	SMARCA4	95	83.731	Phascolarctos_cinereus
ENSORLG00020009728	-	96	81.975	ENSPFOG00000007892	smarca4a	95	82.533	Poecilia_formosa
ENSORLG00020009728	-	100	92.836	ENSPFOG00000012930	-	97	92.901	Poecilia_formosa
ENSORLG00020009728	-	98	88.067	ENSPLAG00000018616	-	89	94.394	Poecilia_latipinna
ENSORLG00020009728	-	96	82.222	ENSPLAG00000014294	smarca4a	95	82.658	Poecilia_latipinna
ENSORLG00020009728	-	92	83.171	ENSPMEG00000003725	smarca4a	93	83.193	Poecilia_mexicana
ENSORLG00020009728	-	95	93.561	ENSPMEG00000008929	-	93	93.394	Poecilia_mexicana
ENSORLG00020009728	-	95	93.400	ENSPREG00000014823	-	93	93.359	Poecilia_reticulata
ENSORLG00020009728	-	98	78.874	ENSPREG00000014608	smarca4a	96	82.995	Poecilia_reticulata
ENSORLG00020009728	-	96	85.029	ENSPPYG00000009568	SMARCA4	95	81.131	Pongo_abelii
ENSORLG00020009728	-	80	80.795	ENSPCAG00000014054	SMARCA4	73	80.795	Procavia_capensis
ENSORLG00020009728	-	99	83.154	ENSPCOG00000023011	SMARCA4	95	83.396	Propithecus_coquereli
ENSORLG00020009728	-	95	73.805	ENSPVAG00000007787	SMARCA4	91	73.463	Pteropus_vampyrus
ENSORLG00020009728	-	99	81.428	ENSPNYG00000000717	smarca4a	93	85.275	Pundamilia_nyererei
ENSORLG00020009728	-	98	91.020	ENSPNYG00000023995	-	95	93.446	Pundamilia_nyererei
ENSORLG00020009728	-	93	89.639	ENSPNAG00000024136	smarca4a	94	80.973	Pygocentrus_nattereri
ENSORLG00020009728	-	98	86.991	ENSPNAG00000006636	-	93	87.950	Pygocentrus_nattereri
ENSORLG00020009728	-	97	87.716	ENSRNOG00000009271	Smarca4	95	83.616	Rattus_norvegicus
ENSORLG00020009728	-	97	87.457	ENSRBIG00000038696	SMARCA4	94	83.553	Rhinopithecus_bieti
ENSORLG00020009728	-	97	87.457	ENSRROG00000045509	SMARCA4	95	83.616	Rhinopithecus_roxellana
ENSORLG00020009728	-	97	87.457	ENSSBOG00000026896	SMARCA4	95	83.490	Saimiri_boliviensis_boliviensis
ENSORLG00020009728	-	99	83.313	ENSSHAG00000001642	SMARCA4	95	83.606	Sarcophilus_harrisii
ENSORLG00020009728	-	99	86.148	ENSSFOG00015013823	smarca4	95	85.489	Scleropages_formosus
ENSORLG00020009728	-	95	81.382	ENSSFOG00015009921	-	92	90.930	Scleropages_formosus
ENSORLG00020009728	-	100	91.099	ENSSMAG00000014082	-	97	91.291	Scophthalmus_maximus
ENSORLG00020009728	-	98	82.255	ENSSMAG00000003200	smarca4a	95	83.468	Scophthalmus_maximus
ENSORLG00020009728	-	99	79.535	ENSSDUG00000017298	smarca4a	95	78.822	Seriola_dumerili
ENSORLG00020009728	-	99	93.427	ENSSDUG00000005388	-	95	94.156	Seriola_dumerili
ENSORLG00020009728	-	98	88.309	ENSSLDG00000023663	-	93	90.826	Seriola_lalandi_dorsalis
ENSORLG00020009728	-	95	83.980	ENSSLDG00000024486	smarca4a	96	84.168	Seriola_lalandi_dorsalis
ENSORLG00020009728	-	61	96.894	ENSSARG00000013477	SMARCA4	82	96.894	Sorex_araneus
ENSORLG00020009728	-	95	80.675	ENSSPUG00000004558	SMARCA4	94	80.456	Sphenodon_punctatus
ENSORLG00020009728	-	100	93.124	ENSSPAG00000012533	-	97	93.566	Stegastes_partitus
ENSORLG00020009728	-	95	83.542	ENSSPAG00000004248	smarca4a	95	84.082	Stegastes_partitus
ENSORLG00020009728	-	97	87.662	ENSSSCG00000013629	SMARCA4	95	83.521	Sus_scrofa
ENSORLG00020009728	-	58	80.047	ENSTGUG00000015488	-	98	83.867	Taeniopygia_guttata
ENSORLG00020009728	-	95	79.582	ENSTRUG00000004885	smarca4a	99	79.333	Takifugu_rubripes
ENSORLG00020009728	-	95	91.329	ENSTRUG00000001378	SMARCA4	94	91.541	Takifugu_rubripes
ENSORLG00020009728	-	76	83.265	ENSTNIG00000004859	-	96	87.039	Tetraodon_nigroviridis
ENSORLG00020009728	-	99	89.269	ENSTNIG00000004536	SMARCA4	97	89.585	Tetraodon_nigroviridis
ENSORLG00020009728	-	97	83.936	ENSTTRG00000009519	SMARCA4	95	80.123	Tursiops_truncatus
ENSORLG00020009728	-	97	87.803	ENSUAMG00000014661	SMARCA4	95	83.626	Ursus_americanus
ENSORLG00020009728	-	98	84.318	ENSUMAG00000022005	SMARCA4	98	90.137	Ursus_maritimus
ENSORLG00020009728	-	97	87.803	ENSVVUG00000017820	SMARCA4	92	83.563	Vulpes_vulpes
ENSORLG00020009728	-	99	78.584	ENSXETG00000009355	smarca4	89	83.986	Xenopus_tropicalis
ENSORLG00020009728	-	98	89.417	ENSXCOG00000013494	-	96	91.464	Xiphophorus_couchianus
ENSORLG00020009728	-	96	82.302	ENSXMAG00000006321	smarca4a	96	82.053	Xiphophorus_maculatus
ENSORLG00020009728	-	100	93.577	ENSXMAG00000007030	-	97	93.793	Xiphophorus_maculatus