EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020009823 (Gene tree)
Gene ID: -
Gene Symbol: ptcd2
Alias: -
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 4298 bases
Position: chr12:6747232-6751529
Accession: 101156993
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020008919	MRP-S27	PF10037.9	2.2e-07	1	1
ENSORLP00020008907	MRP-S27	PF10037.9	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020000391	-	1585	-	ENSORLP00020008907	358 (aa)	-	-
ENSORLT00020000363	-	1660	XM_023961024	ENSORLP00020008919	383 (aa)	XP_023816792	-

Gene Model

Click here to download ENSORLG00020009823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020009823's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020009823	ptcd2	94	45.055	ENSG00000049883	PTCD2	100	41.379	Homo_sapiens
ENSORLG00020009823	ptcd2	100	70.757	ENSAPOG00000020682	ptcd2	100	70.757	Acanthochromis_polyacanthus
ENSORLG00020009823	ptcd2	90	44.220	ENSAMEG00000007194	PTCD2	89	44.220	Ailuropoda_melanoleuca
ENSORLG00020009823	ptcd2	90	65.517	ENSACIG00000002053	ptcd2	100	65.517	Amphilophus_citrinellus
ENSORLG00020009823	ptcd2	100	71.279	ENSAOCG00000006616	ptcd2	98	71.279	Amphiprion_ocellaris
ENSORLG00020009823	ptcd2	100	71.279	ENSAPEG00000022926	ptcd2	98	71.279	Amphiprion_percula
ENSORLG00020009823	ptcd2	93	47.059	ENSACAG00000009747	PTCD2	92	46.927	Anolis_carolinensis
ENSORLG00020009823	ptcd2	90	46.243	ENSANAG00000029353	PTCD2	89	46.418	Aotus_nancymaae
ENSORLG00020009823	ptcd2	100	72.585	ENSACLG00000027742	ptcd2	98	72.585	Astatotilapia_calliptera
ENSORLG00020009823	ptcd2	90	52.299	ENSAMXG00000029404	ptcd2	92	52.299	Astyanax_mexicanus
ENSORLG00020009823	ptcd2	90	46.532	ENSBTAG00000014675	PTCD2	90	46.532	Bos_taurus
ENSORLG00020009823	ptcd2	90	44.509	ENSCJAG00000016364	PTCD2	89	44.699	Callithrix_jacchus
ENSORLG00020009823	ptcd2	94	45.924	ENSCAFG00000007982	PTCD2	86	45.924	Canis_familiaris
ENSORLG00020009823	ptcd2	90	46.974	ENSCAFG00020019147	PTCD2	97	46.974	Canis_lupus_dingo
ENSORLG00020009823	ptcd2	90	46.821	ENSCHIG00000017118	PTCD2	90	46.821	Capra_hircus
ENSORLG00020009823	ptcd2	94	43.850	ENSCPOG00000040168	PTCD2	98	43.850	Cavia_porcellus
ENSORLG00020009823	ptcd2	90	45.954	ENSCCAG00000029389	-	89	46.132	Cebus_capucinus
ENSORLG00020009823	ptcd2	71	46.494	ENSCCAG00000021996	-	69	54.884	Cebus_capucinus
ENSORLG00020009823	ptcd2	97	44.920	ENSCATG00000019069	PTCD2	98	44.920	Cercocebus_atys
ENSORLG00020009823	ptcd2	90	45.665	ENSCLAG00000000072	PTCD2	90	45.665	Chinchilla_lanigera
ENSORLG00020009823	ptcd2	90	46.821	ENSCSAG00000015623	PTCD2	98	45.600	Chlorocebus_sabaeus
ENSORLG00020009823	ptcd2	71	51.176	ENSCHOG00000010634	PTCD2	73	51.176	Choloepus_hoffmanni
ENSORLG00020009823	ptcd2	93	42.978	ENSCPBG00000000216	PTCD2	91	42.978	Chrysemys_picta_bellii
ENSORLG00020009823	ptcd2	97	45.333	ENSCANG00000035636	PTCD2	96	45.333	Colobus_angolensis_palliatus
ENSORLG00020009823	ptcd2	90	46.243	ENSCGRG00001015289	Ptcd2	76	46.243	Cricetulus_griseus_chok1gshd
ENSORLG00020009823	ptcd2	90	46.243	ENSCGRG00000006193	Ptcd2	76	46.243	Cricetulus_griseus_crigri
ENSORLG00020009823	ptcd2	100	72.585	ENSCVAG00000001285	ptcd2	98	72.585	Cyprinodon_variegatus
ENSORLG00020009823	ptcd2	94	50.416	ENSDARG00000035391	ptcd2	94	50.416	Danio_rerio
ENSORLG00020009823	ptcd2	90	45.087	ENSDNOG00000008719	PTCD2	90	44.380	Dasypus_novemcinctus
ENSORLG00020009823	ptcd2	97	43.651	ENSDORG00000004921	Ptcd2	98	43.651	Dipodomys_ordii
ENSORLG00020009823	ptcd2	94	42.818	ENSETEG00000016542	PTCD2	95	42.818	Echinops_telfairi
ENSORLG00020009823	ptcd2	90	46.243	ENSEASG00005018038	PTCD2	91	46.243	Equus_asinus_asinus
ENSORLG00020009823	ptcd2	99	44.010	ENSECAG00000007022	PTCD2	99	44.010	Equus_caballus
ENSORLG00020009823	ptcd2	99	44.819	ENSEEUG00000014031	PTCD2	99	44.819	Erinaceus_europaeus
ENSORLG00020009823	ptcd2	100	59.375	ENSELUG00000003584	ptcd2	100	59.375	Esox_lucius
ENSORLG00020009823	ptcd2	82	45.397	ENSFCAG00000045432	PTCD2	74	45.397	Felis_catus
ENSORLG00020009823	ptcd2	85	41.284	ENSFALG00000010299	PTCD2	99	41.284	Ficedula_albicollis
ENSORLG00020009823	ptcd2	90	44.220	ENSFDAG00000018461	PTCD2	90	44.220	Fukomys_damarensis
ENSORLG00020009823	ptcd2	100	60.104	ENSGMOG00000003637	ptcd2	100	60.104	Gadus_morhua
ENSORLG00020009823	ptcd2	93	40.223	ENSGALG00000038260	PTCD2	94	40.223	Gallus_gallus
ENSORLG00020009823	ptcd2	90	48.555	ENSGAGG00000021952	PTCD2	89	48.555	Gopherus_agassizii
ENSORLG00020009823	ptcd2	94	45.055	ENSGGOG00000010695	PTCD2	94	45.055	Gorilla_gorilla
ENSORLG00020009823	ptcd2	99	71.354	ENSHBUG00000009191	ptcd2	99	71.354	Haplochromis_burtoni
ENSORLG00020009823	ptcd2	93	44.892	ENSHGLG00000001234	PTCD2	97	44.892	Heterocephalus_glaber_female
ENSORLG00020009823	ptcd2	93	44.892	ENSHGLG00100015419	PTCD2	97	44.892	Heterocephalus_glaber_male
ENSORLG00020009823	ptcd2	98	65.000	ENSHCOG00000001703	ptcd2	99	64.474	Hippocampus_comes
ENSORLG00020009823	ptcd2	84	55.901	ENSIPUG00000006080	ptcd2	90	55.072	Ictalurus_punctatus
ENSORLG00020009823	ptcd2	90	45.245	ENSSTOG00000006596	PTCD2	91	45.245	Ictidomys_tridecemlineatus
ENSORLG00020009823	ptcd2	90	46.110	ENSJJAG00000024388	Ptcd2	90	46.110	Jaculus_jaculus
ENSORLG00020009823	ptcd2	98	59.733	ENSKMAG00000009329	ptcd2	98	59.733	Kryptolebias_marmoratus
ENSORLG00020009823	ptcd2	97	65.054	ENSLBEG00000024871	ptcd2	95	65.054	Labrus_bergylta
ENSORLG00020009823	ptcd2	97	51.872	ENSLOCG00000011122	ptcd2	97	51.872	Lepisosteus_oculatus
ENSORLG00020009823	ptcd2	71	50.549	ENSLAFG00000004115	PTCD2	95	48.639	Loxodonta_africana
ENSORLG00020009823	ptcd2	97	45.600	ENSMFAG00000031516	PTCD2	96	45.600	Macaca_fascicularis
ENSORLG00020009823	ptcd2	95	45.257	ENSMNEG00000007537	PTCD2	96	45.257	Macaca_nemestrina
ENSORLG00020009823	ptcd2	97	45.067	ENSMLEG00000031093	PTCD2	96	45.067	Mandrillus_leucophaeus
ENSORLG00020009823	ptcd2	98	70.667	ENSMAMG00000018529	ptcd2	98	70.667	Mastacembelus_armatus
ENSORLG00020009823	ptcd2	100	72.585	ENSMZEG00005003625	ptcd2	98	72.585	Maylandia_zebra
ENSORLG00020009823	ptcd2	91	41.667	ENSMGAG00000005033	PTCD2	100	41.667	Meleagris_gallopavo
ENSORLG00020009823	ptcd2	90	45.872	ENSMAUG00000020253	Ptcd2	89	45.872	Mesocricetus_auratus
ENSORLG00020009823	ptcd2	94	44.110	ENSMICG00000004535	PTCD2	94	44.110	Microcebus_murinus
ENSORLG00020009823	ptcd2	94	45.232	ENSMOCG00000019985	Ptcd2	96	45.232	Microtus_ochrogaster
ENSORLG00020009823	ptcd2	92	43.662	ENSMODG00000001695	PTCD2	92	43.662	Monodelphis_domestica
ENSORLG00020009823	ptcd2	100	69.713	ENSMALG00000022372	ptcd2	100	69.713	Monopterus_albus
ENSORLG00020009823	ptcd2	94	44.687	MGP_CAROLIEiJ_G0018829	Ptcd2	96	44.687	Mus_caroli
ENSORLG00020009823	ptcd2	94	43.597	ENSMUSG00000021650	Ptcd2	96	43.597	Mus_musculus
ENSORLG00020009823	ptcd2	90	46.821	MGP_PahariEiJ_G0015904	Ptcd2	91	46.821	Mus_pahari
ENSORLG00020009823	ptcd2	94	44.414	MGP_SPRETEiJ_G0019711	Ptcd2	96	44.414	Mus_spretus
ENSORLG00020009823	ptcd2	90	45.665	ENSMPUG00000014401	PTCD2	90	45.665	Mustela_putorius_furo
ENSORLG00020009823	ptcd2	90	45.376	ENSMLUG00000007374	PTCD2	89	45.376	Myotis_lucifugus
ENSORLG00020009823	ptcd2	94	43.802	ENSNGAG00000005027	Ptcd2	95	43.132	Nannospalax_galili
ENSORLG00020009823	ptcd2	86	70.213	ENSNBRG00000000092	-	100	70.213	Neolamprologus_brichardi
ENSORLG00020009823	ptcd2	100	72.846	ENSNBRG00000008174	ptcd2	100	72.846	Neolamprologus_brichardi
ENSORLG00020009823	ptcd2	94	44.780	ENSNLEG00000004516	PTCD2	94	44.780	Nomascus_leucogenys
ENSORLG00020009823	ptcd2	90	45.533	ENSOPRG00000007290	PTCD2	89	45.376	Ochotona_princeps
ENSORLG00020009823	ptcd2	93	46.067	ENSODEG00000016417	PTCD2	93	46.067	Octodon_degus
ENSORLG00020009823	ptcd2	86	72.036	ENSONIG00000011269	ptcd2	96	72.036	Oreochromis_niloticus
ENSORLG00020009823	ptcd2	90	46.532	ENSOCUG00000007970	PTCD2	90	46.532	Oryctolagus_cuniculus
ENSORLG00020009823	ptcd2	100	98.956	ENSORLG00000003851	ptcd2	98	98.956	Oryzias_latipes
ENSORLG00020009823	ptcd2	90	94.509	ENSORLG00015016777	ptcd2	99	94.509	Oryzias_latipes_hsok
ENSORLG00020009823	ptcd2	100	87.728	ENSOMEG00000012396	ptcd2	93	87.728	Oryzias_melastigma
ENSORLG00020009823	ptcd2	90	45.954	ENSOGAG00000008390	PTCD2	89	45.954	Otolemur_garnettii
ENSORLG00020009823	ptcd2	90	47.110	ENSOARG00000005087	PTCD2	89	47.110	Ovis_aries
ENSORLG00020009823	ptcd2	94	45.055	ENSPPAG00000028480	PTCD2	94	45.055	Pan_paniscus
ENSORLG00020009823	ptcd2	94	44.780	ENSPTRG00000016968	PTCD2	94	44.780	Pan_troglodytes
ENSORLG00020009823	ptcd2	90	46.377	ENSPANG00000006611	PTCD2	89	46.377	Papio_anubis
ENSORLG00020009823	ptcd2	90	54.155	ENSPKIG00000019896	ptcd2	90	54.155	Paramormyrops_kingsleyae
ENSORLG00020009823	ptcd2	74	49.470	ENSPSIG00000014559	PTCD2	88	49.470	Pelodiscus_sinensis
ENSORLG00020009823	ptcd2	94	46.341	ENSPEMG00000000884	Ptcd2	96	46.341	Peromyscus_maniculatus_bairdii
ENSORLG00020009823	ptcd2	100	45.361	ENSPCIG00000029047	PTCD2	100	45.103	Phascolarctos_cinereus
ENSORLG00020009823	ptcd2	100	68.146	ENSPLAG00000010456	ptcd2	100	68.146	Poecilia_latipinna
ENSORLG00020009823	ptcd2	100	68.930	ENSPREG00000021797	ptcd2	98	68.930	Poecilia_reticulata
ENSORLG00020009823	ptcd2	94	40.659	ENSPPYG00000015543	PTCD2	93	40.659	Pongo_abelii
ENSORLG00020009823	ptcd2	71	43.542	ENSPCAG00000006806	PTCD2	86	43.542	Procavia_capensis
ENSORLG00020009823	ptcd2	90	45.665	ENSPVAG00000010935	PTCD2	89	45.665	Pteropus_vampyrus
ENSORLG00020009823	ptcd2	100	72.585	ENSPNYG00000003122	ptcd2	98	72.585	Pundamilia_nyererei
ENSORLG00020009823	ptcd2	94	61.918	ENSPNAG00000021490	ptcd2	95	61.918	Pygocentrus_nattereri
ENSORLG00020009823	ptcd2	95	44.837	ENSRNOG00000028403	Ptcd2	97	44.837	Rattus_norvegicus
ENSORLG00020009823	ptcd2	94	42.033	ENSRBIG00000032929	PTCD2	93	42.033	Rhinopithecus_bieti
ENSORLG00020009823	ptcd2	94	45.879	ENSRROG00000000080	PTCD2	95	45.879	Rhinopithecus_roxellana
ENSORLG00020009823	ptcd2	90	46.132	ENSSBOG00000018911	PTCD2	90	46.132	Saimiri_boliviensis_boliviensis
ENSORLG00020009823	ptcd2	92	43.662	ENSSHAG00000003833	PTCD2	92	43.662	Sarcophilus_harrisii
ENSORLG00020009823	ptcd2	90	53.179	ENSSFOG00015015415	ptcd2	90	53.179	Scleropages_formosus
ENSORLG00020009823	ptcd2	92	63.173	ENSSMAG00000010350	ptcd2	92	63.173	Scophthalmus_maximus
ENSORLG00020009823	ptcd2	100	69.191	ENSSDUG00000008142	ptcd2	95	69.191	Seriola_dumerili
ENSORLG00020009823	ptcd2	100	68.930	ENSSLDG00000015284	ptcd2	100	68.930	Seriola_lalandi_dorsalis
ENSORLG00020009823	ptcd2	56	49.246	ENSSARG00000004983	PTCD2	67	49.761	Sorex_araneus
ENSORLG00020009823	ptcd2	93	43.258	ENSSPUG00000000176	PTCD2	87	43.931	Sphenodon_punctatus
ENSORLG00020009823	ptcd2	99	64.062	ENSSPAG00000008591	ptcd2	99	64.062	Stegastes_partitus
ENSORLG00020009823	ptcd2	94	44.565	ENSSSCG00000016975	PTCD2	87	44.565	Sus_scrofa
ENSORLG00020009823	ptcd2	90	43.314	ENSTGUG00000005705	PTCD2	99	43.314	Taeniopygia_guttata
ENSORLG00020009823	ptcd2	90	45.376	ENSTBEG00000016559	PTCD2	89	45.609	Tupaia_belangeri
ENSORLG00020009823	ptcd2	90	46.377	ENSTTRG00000011851	PTCD2	89	46.377	Tursiops_truncatus
ENSORLG00020009823	ptcd2	90	44.220	ENSUAMG00000007583	PTCD2	81	44.220	Ursus_americanus
ENSORLG00020009823	ptcd2	94	43.251	ENSUMAG00000007666	PTCD2	95	43.251	Ursus_maritimus
ENSORLG00020009823	ptcd2	91	44.253	ENSVPAG00000009597	PTCD2	89	44.253	Vicugna_pacos
ENSORLG00020009823	ptcd2	90	46.821	ENSVVUG00000007299	-	96	45.652	Vulpes_vulpes
ENSORLG00020009823	ptcd2	90	46.000	ENSXETG00000031652	PTCD2	91	46.000	Xenopus_tropicalis
ENSORLG00020009823	ptcd2	100	67.624	ENSXMAG00000005940	ptcd2	91	67.624	Xiphophorus_maculatus