EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020010730 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 41447 bases
Position: chr1:8743470-8784916
Accession: 101157348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020027646	Ago_hook	PF10427.9	1.2e-06	1	1
ENSORLP00020027670	Ago_hook	PF10427.9	1.2e-06	1	1
ENSORLP00020009831	Ago_hook	PF10427.9	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020016339	-	6682	-	ENSORLP00020027670	1909 (aa)	-	-
ENSORLT00020016324	-	6565	XM_011473888	ENSORLP00020009831	1870 (aa)	XP_011472190	-
ENSORLT00020031071	-	5988	XM_020700409	ENSORLP00020027646	1909 (aa)	XP_020556068	-

Gene Model

Click here to download ENSORLG00020010730's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020010730's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020010730	tnrc6c2	90	53.106	ENSORLG00020016510	tnrc6c1	100	52.958

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020010730	tnrc6c2	99	82.528	ENSAOCG00000017648	tnrc6c2	100	82.551	Amphiprion_ocellaris
ENSORLG00020010730	tnrc6c2	83	85.635	ENSATEG00000003656	tnrc6c2	57	85.635	Anabas_testudineus
ENSORLG00020010730	tnrc6c2	99	81.370	ENSACLG00000006469	tnrc6c2	99	81.370	Astatotilapia_calliptera
ENSORLG00020010730	tnrc6c2	87	57.092	ENSAMXG00000009579	tnrc6c2	100	56.826	Astyanax_mexicanus
ENSORLG00020010730	tnrc6c2	91	56.649	ENSDARG00000103851	tnrc6c2	100	56.566	Danio_rerio
ENSORLG00020010730	tnrc6c2	83	54.146	ENSELUG00000008149	-	100	51.236	Esox_lucius
ENSORLG00020010730	tnrc6c2	87	60.872	ENSELUG00000007206	tnrc6c2	59	73.895	Esox_lucius
ENSORLG00020010730	tnrc6c2	92	80.161	ENSFHEG00000003901	tnrc6c2	100	82.263	Fundulus_heteroclitus
ENSORLG00020010730	tnrc6c2	98	70.011	ENSGACG00000019401	tnrc6c2	99	70.054	Gasterosteus_aculeatus
ENSORLG00020010730	tnrc6c2	99	81.166	ENSHBUG00000018310	tnrc6c2	99	81.594	Haplochromis_burtoni
ENSORLG00020010730	tnrc6c2	99	73.899	ENSHCOG00000017802	tnrc6c2	100	73.593	Hippocampus_comes
ENSORLG00020010730	tnrc6c2	87	53.353	ENSIPUG00000022767	tnrc6c2	100	51.903	Ictalurus_punctatus
ENSORLG00020010730	tnrc6c2	87	81.846	ENSMAMG00000001718	tnrc6c2	100	82.149	Mastacembelus_armatus
ENSORLG00020010730	tnrc6c2	99	81.424	ENSMZEG00005023905	tnrc6c2	99	81.424	Maylandia_zebra
ENSORLG00020010730	tnrc6c2	87	80.688	ENSMALG00000020932	tnrc6c2	100	80.205	Monopterus_albus
ENSORLG00020010730	tnrc6c2	87	77.356	ENSNBRG00000000452	tnrc6c2	57	86.253	Neolamprologus_brichardi
ENSORLG00020010730	tnrc6c2	85	78.984	ENSONIG00000018123	tnrc6c2	100	80.050	Oreochromis_niloticus
ENSORLG00020010730	tnrc6c2	100	99.109	ENSORLG00000003327	tnrc6c2	100	99.109	Oryzias_latipes
ENSORLG00020010730	tnrc6c2	100	98.900	ENSORLG00015009232	tnrc6c2	100	98.900	Oryzias_latipes_hsok
ENSORLG00020010730	tnrc6c2	100	94.575	ENSOMEG00000017952	tnrc6c2	100	94.731	Oryzias_melastigma
ENSORLG00020010730	tnrc6c2	92	71.976	ENSPFOG00000011590	tnrc6c2	99	76.155	Poecilia_formosa
ENSORLG00020010730	tnrc6c2	87	78.030	ENSPLAG00000006992	tnrc6c2	100	78.090	Poecilia_latipinna
ENSORLG00020010730	tnrc6c2	99	79.530	ENSPMEG00000012946	tnrc6c2	100	80.021	Poecilia_mexicana
ENSORLG00020010730	tnrc6c2	87	77.300	ENSPREG00000015823	tnrc6c2	100	76.407	Poecilia_reticulata
ENSORLG00020010730	tnrc6c2	87	82.260	ENSPNYG00000002582	tnrc6c2	100	82.807	Pundamilia_nyererei
ENSORLG00020010730	tnrc6c2	87	56.673	ENSPNAG00000026838	tnrc6c2	100	57.014	Pygocentrus_nattereri
ENSORLG00020010730	tnrc6c2	87	79.649	ENSSMAG00000015145	tnrc6c2	100	80.073	Scophthalmus_maximus
ENSORLG00020010730	tnrc6c2	87	83.252	ENSSDUG00000020741	tnrc6c2	100	83.618	Seriola_dumerili
ENSORLG00020010730	tnrc6c2	87	83.252	ENSSLDG00000002077	tnrc6c2	100	83.618	Seriola_lalandi_dorsalis
ENSORLG00020010730	tnrc6c2	99	83.015	ENSSPAG00000013052	tnrc6c2	100	83.570	Stegastes_partitus
ENSORLG00020010730	tnrc6c2	84	81.140	ENSTNIG00000004178	tnrc6c2	94	82.475	Tetraodon_nigroviridis
ENSORLG00020010730	tnrc6c2	87	77.566	ENSXCOG00000013252	tnrc6c2	100	78.401	Xiphophorus_couchianus
ENSORLG00020010730	tnrc6c2	87	81.968	ENSXMAG00000006739	tnrc6c2	100	82.518	Xiphophorus_maculatus