EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020011834 (Gene tree)
Gene ID: -
Gene Symbol: sf1
Alias: -
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 15712 bases
Position: chr18:26192911-26208622
Accession: ZDB-GENE-030131-2492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020028392	KH_1	PF00013.29	3.1e-06	1	1
ENSORLP00020028392	zf-CCHC	PF00098.23	0.00052	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020017683	-	5485	-	ENSORLP00020028392	674 (aa)	-	-

Gene Model

Click here to download ENSORLG00020011834's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020011834's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020011834	sf1	69	86.765	ENSAPOG00000012341	sf1	69	87.660	Acanthochromis_polyacanthus
ENSORLG00020011834	sf1	58	76.739	ENSAMEG00000017828	SF1	59	80.563	Ailuropoda_melanoleuca
ENSORLG00020011834	sf1	69	86.975	ENSAOCG00000010934	sf1	69	87.872	Amphiprion_ocellaris
ENSORLG00020011834	sf1	69	86.975	ENSAPEG00000009498	sf1	69	87.872	Amphiprion_percula
ENSORLG00020011834	sf1	66	87.719	ENSATEG00000001894	sf1	69	86.864	Anabas_testudineus
ENSORLG00020011834	sf1	60	76.056	ENSANAG00000026664	-	92	79.000	Aotus_nancymaae
ENSORLG00020011834	sf1	85	64.145	ENSANAG00000022607	-	89	72.222	Aotus_nancymaae
ENSORLG00020011834	sf1	67	83.736	ENSAMXG00000003630	sf1	61	83.047	Astyanax_mexicanus
ENSORLG00020011834	sf1	60	75.352	ENSBTAG00000001035	SF1	65	79.250	Bos_taurus
ENSORLG00020011834	sf1	60	75.352	ENSCJAG00000002780	SF1	77	68.121	Callithrix_jacchus
ENSORLG00020011834	sf1	60	75.352	ENSCAFG00000014239	SF1	61	79.000	Canis_familiaris
ENSORLG00020011834	sf1	60	75.352	ENSCAFG00020014381	SF1	61	79.250	Canis_lupus_dingo
ENSORLG00020011834	sf1	60	75.587	ENSCHIG00000025867	SF1	71	79.250	Capra_hircus
ENSORLG00020011834	sf1	59	71.535	ENSTSYG00000033618	SF1	81	93.455	Carlito_syrichta
ENSORLG00020011834	sf1	58	76.998	ENSCAPG00000010762	SF1	68	80.879	Cavia_aperea
ENSORLG00020011834	sf1	58	76.998	ENSCPOG00000012290	SF1	70	80.879	Cavia_porcellus
ENSORLG00020011834	sf1	57	71.033	ENSCCAG00000023781	-	85	70.077	Cebus_capucinus
ENSORLG00020011834	sf1	60	76.611	ENSCCAG00000037881	SF1	92	79.250	Cebus_capucinus
ENSORLG00020011834	sf1	60	75.587	ENSCATG00000011564	SF1	91	79.744	Cercocebus_atys
ENSORLG00020011834	sf1	60	75.587	ENSCSAG00000007258	SF1	71	79.250	Chlorocebus_sabaeus
ENSORLG00020011834	sf1	56	71.357	ENSCHOG00000006008	SF1	68	74.731	Choloepus_hoffmanni
ENSORLG00020011834	sf1	62	79.206	ENSCPBG00000023763	SF1	50	82.474	Chrysemys_picta_bellii
ENSORLG00020011834	sf1	59	57.143	ENSCING00000005564	-	95	55.208	Ciona_intestinalis
ENSORLG00020011834	sf1	53	55.673	ENSCSAVG00000009055	-	65	61.125	Ciona_savignyi
ENSORLG00020011834	sf1	60	75.352	ENSCANG00000042201	SF1	91	79.744	Colobus_angolensis_palliatus
ENSORLG00020011834	sf1	60	76.291	ENSCGRG00001003677	Sf1	68	79.750	Cricetulus_griseus_chok1gshd
ENSORLG00020011834	sf1	58	77.724	ENSCGRG00000001708	Sf1	70	81.395	Cricetulus_griseus_crigri
ENSORLG00020011834	sf1	70	87.029	ENSCSEG00000014375	sf1	67	87.768	Cynoglossus_semilaevis
ENSORLG00020011834	sf1	66	90.088	ENSCVAG00000001670	sf1	69	88.486	Cyprinodon_variegatus
ENSORLG00020011834	sf1	68	79.661	ENSDARG00000008188	sf1	68	88.175	Danio_rerio
ENSORLG00020011834	sf1	60	76.291	ENSDNOG00000001282	SF1	71	79.000	Dasypus_novemcinctus
ENSORLG00020011834	sf1	59	76.794	ENSDORG00000016334	Sf1	60	80.612	Dipodomys_ordii
ENSORLG00020011834	sf1	60	75.587	ENSEASG00005018272	SF1	71	79.250	Equus_asinus_asinus
ENSORLG00020011834	sf1	60	75.822	ENSECAG00000024544	SF1	71	79.500	Equus_caballus
ENSORLG00020011834	sf1	52	77.480	ENSEEUG00000001058	SF1	86	80.692	Erinaceus_europaeus
ENSORLG00020011834	sf1	69	80.855	ENSELUG00000013225	sf1	61	84.764	Esox_lucius
ENSORLG00020011834	sf1	60	75.352	ENSFCAG00000012231	SF1	77	67.932	Felis_catus
ENSORLG00020011834	sf1	58	76.998	ENSFDAG00000009833	SF1	68	80.879	Fukomys_damarensis
ENSORLG00020011834	sf1	66	89.625	ENSFHEG00000022656	sf1	97	87.368	Fundulus_heteroclitus
ENSORLG00020011834	sf1	63	81.352	ENSGMOG00000007469	sf1	62	91.228	Gadus_morhua
ENSORLG00020011834	sf1	69	87.315	ENSGAFG00000019284	sf1	76	87.420	Gambusia_affinis
ENSORLG00020011834	sf1	56	90.339	ENSGACG00000000826	sf1	67	90.464	Gasterosteus_aculeatus
ENSORLG00020011834	sf1	62	78.972	ENSGAGG00000021691	SF1	69	70.825	Gopherus_agassizii
ENSORLG00020011834	sf1	66	88.546	ENSHBUG00000011598	sf1	69	88.412	Haplochromis_burtoni
ENSORLG00020011834	sf1	60	75.587	ENSHGLG00000009541	SF1	68	79.250	Heterocephalus_glaber_female
ENSORLG00020011834	sf1	55	69.287	ENSHGLG00100008255	-	76	71.250	Heterocephalus_glaber_male
ENSORLG00020011834	sf1	58	76.998	ENSHGLG00100013879	-	68	80.879	Heterocephalus_glaber_male
ENSORLG00020011834	sf1	68	85.470	ENSHCOG00000011388	sf1	69	85.470	Hippocampus_comes
ENSORLG00020011834	sf1	64	67.338	ENSSTOG00000024353	-	71	70.426	Ictidomys_tridecemlineatus
ENSORLG00020011834	sf1	58	76.998	ENSSTOG00000009790	-	60	80.879	Ictidomys_tridecemlineatus
ENSORLG00020011834	sf1	60	75.587	ENSJJAG00000011788	Sf1	61	79.500	Jaculus_jaculus
ENSORLG00020011834	sf1	67	87.555	ENSKMAG00000005854	sf1	72	87.339	Kryptolebias_marmoratus
ENSORLG00020011834	sf1	67	88.017	ENSLBEG00000019836	sf1	74	87.076	Labrus_bergylta
ENSORLG00020011834	sf1	66	77.755	ENSLOCG00000002130	sf1	69	78.937	Lepisosteus_oculatus
ENSORLG00020011834	sf1	58	78.208	ENSLAFG00000007201	SF1	65	81.654	Loxodonta_africana
ENSORLG00020011834	sf1	60	75.352	ENSMFAG00000033122	SF1	91	79.744	Macaca_fascicularis
ENSORLG00020011834	sf1	60	75.587	ENSMMUG00000022606	SF1	93	80.307	Macaca_mulatta
ENSORLG00020011834	sf1	60	75.587	ENSMNEG00000037901	SF1	91	79.744	Macaca_nemestrina
ENSORLG00020011834	sf1	61	74.253	ENSMLEG00000040706	SF1	89	81.432	Mandrillus_leucophaeus
ENSORLG00020011834	sf1	66	90.132	ENSMAMG00000001780	sf1	70	88.559	Mastacembelus_armatus
ENSORLG00020011834	sf1	66	88.546	ENSMZEG00005009196	sf1	69	88.412	Maylandia_zebra
ENSORLG00020011834	sf1	60	76.291	ENSMAUG00000014064	Sf1	68	79.750	Mesocricetus_auratus
ENSORLG00020011834	sf1	60	75.587	ENSMICG00000001202	SF1	92	79.052	Microcebus_murinus
ENSORLG00020011834	sf1	60	75.822	ENSMOCG00000022038	Sf1	68	79.750	Microtus_ochrogaster
ENSORLG00020011834	sf1	66	85.210	ENSMMOG00000020474	sf1	69	83.795	Mola_mola
ENSORLG00020011834	sf1	59	77.033	ENSMODG00000029407	SF1	83	80.818	Monodelphis_domestica
ENSORLG00020011834	sf1	66	84.035	ENSMALG00000020521	sf1	75	82.655	Monopterus_albus
ENSORLG00020011834	sf1	60	76.291	MGP_CAROLIEiJ_G0022607	Sf1	99	94.737	Mus_caroli
ENSORLG00020011834	sf1	60	76.291	ENSMUSG00000024949	Sf1	99	94.737	Mus_musculus
ENSORLG00020011834	sf1	60	76.291	MGP_PahariEiJ_G0014101	Sf1	99	94.737	Mus_pahari
ENSORLG00020011834	sf1	60	76.291	MGP_SPRETEiJ_G0023518	Sf1	99	94.737	Mus_spretus
ENSORLG00020011834	sf1	58	76.499	ENSMPUG00000012684	SF1	60	80.563	Mustela_putorius_furo
ENSORLG00020011834	sf1	63	73.051	ENSMLUG00000029800	-	67	76.000	Myotis_lucifugus
ENSORLG00020011834	sf1	58	77.458	ENSMLUG00000015217	-	60	80.563	Myotis_lucifugus
ENSORLG00020011834	sf1	60	75.822	ENSNGAG00000005550	Sf1	68	79.500	Nannospalax_galili
ENSORLG00020011834	sf1	66	87.168	ENSNBRG00000017606	sf1	70	86.207	Neolamprologus_brichardi
ENSORLG00020011834	sf1	60	75.822	ENSNLEG00000005236	-	91	79.744	Nomascus_leucogenys
ENSORLG00020011834	sf1	58	77.073	ENSMEUG00000013424	SF1	71	80.729	Notamacropus_eugenii
ENSORLG00020011834	sf1	52	76.676	ENSOPRG00000005008	SF1	68	81.268	Ochotona_princeps
ENSORLG00020011834	sf1	60	73.239	ENSODEG00000006102	-	62	76.750	Octodon_degus
ENSORLG00020011834	sf1	66	88.326	ENSONIG00000015728	sf1	69	88.197	Oreochromis_niloticus
ENSORLG00020011834	sf1	58	76.499	ENSOCUG00000026486	SF1	61	80.307	Oryctolagus_cuniculus
ENSORLG00020011834	sf1	100	99.703	ENSORLG00000011853	sf1	100	99.703	Oryzias_latipes
ENSORLG00020011834	sf1	100	98.671	ENSORLG00015012855	sf1	100	98.671	Oryzias_latipes_hsok
ENSORLG00020011834	sf1	67	94.690	ENSOMEG00000005210	sf1	69	94.565	Oryzias_melastigma
ENSORLG00020011834	sf1	60	75.352	ENSOGAG00000016196	SF1	61	79.000	Otolemur_garnettii
ENSORLG00020011834	sf1	60	75.587	ENSOARG00000009166	SF1	68	79.000	Ovis_aries
ENSORLG00020011834	sf1	62	73.963	ENSPPAG00000002799	-	91	81.102	Pan_paniscus
ENSORLG00020011834	sf1	58	76.755	ENSPPRG00000013566	SF1	60	81.551	Panthera_pardus
ENSORLG00020011834	sf1	58	76.739	ENSPTIG00000016141	SF1	69	80.563	Panthera_tigris_altaica
ENSORLG00020011834	sf1	60	76.887	ENSPTRG00000003846	SF1	91	79.744	Pan_troglodytes
ENSORLG00020011834	sf1	60	75.587	ENSPANG00000020754	SF1	91	79.744	Papio_anubis
ENSORLG00020011834	sf1	60	76.291	ENSPEMG00000010463	Sf1	68	79.750	Peromyscus_maniculatus_bairdii
ENSORLG00020011834	sf1	60	75.587	ENSPCIG00000018173	SF1	63	79.250	Phascolarctos_cinereus
ENSORLG00020011834	sf1	66	89.648	ENSPFOG00000013683	sf1	69	88.060	Poecilia_formosa
ENSORLG00020011834	sf1	91	82.297	ENSPLAG00000018076	sf1	64	87.850	Poecilia_latipinna
ENSORLG00020011834	sf1	66	89.648	ENSPMEG00000005726	sf1	69	88.060	Poecilia_mexicana
ENSORLG00020011834	sf1	66	89.207	ENSPREG00000004155	sf1	69	87.633	Poecilia_reticulata
ENSORLG00020011834	sf1	60	75.587	ENSPPYG00000003098	-	74	79.000	Pongo_abelii
ENSORLG00020011834	sf1	58	76.499	ENSPCAG00000013631	SF1	77	67.619	Procavia_capensis
ENSORLG00020011834	sf1	75	68.498	ENSPCOG00000027546	SF1	92	79.052	Propithecus_coquereli
ENSORLG00020011834	sf1	59	76.415	ENSPVAG00000016938	SF1	77	68.593	Pteropus_vampyrus
ENSORLG00020011834	sf1	66	89.207	ENSPNYG00000004673	sf1	69	88.197	Pundamilia_nyererei
ENSORLG00020011834	sf1	66	83.850	ENSPNAG00000013072	sf1	69	82.479	Pygocentrus_nattereri
ENSORLG00020011834	sf1	60	76.291	ENSRNOG00000021085	Sf1	63	80.186	Rattus_norvegicus
ENSORLG00020011834	sf1	60	75.587	ENSRBIG00000042818	SF1	91	79.744	Rhinopithecus_bieti
ENSORLG00020011834	sf1	59	76.555	ENSRROG00000045655	SF1	89	81.432	Rhinopithecus_roxellana
ENSORLG00020011834	sf1	87	61.228	ENSSBOG00000022267	-	93	65.915	Saimiri_boliviensis_boliviensis
ENSORLG00020011834	sf1	59	78.378	ENSSHAG00000006841	SF1	72	81.425	Sarcophilus_harrisii
ENSORLG00020011834	sf1	69	79.123	ENSSFOG00015021978	sf1	68	79.406	Scleropages_formosus
ENSORLG00020011834	sf1	84	81.419	ENSSMAG00000007549	sf1	72	86.809	Scophthalmus_maximus
ENSORLG00020011834	sf1	66	89.497	ENSSDUG00000003903	sf1	72	88.584	Seriola_dumerili
ENSORLG00020011834	sf1	66	89.497	ENSSLDG00000013075	sf1	70	88.584	Seriola_lalandi_dorsalis
ENSORLG00020011834	sf1	58	72.397	ENSSARG00000008180	SF1	73	76.227	Sorex_araneus
ENSORLG00020011834	sf1	58	77.389	ENSSPUG00000012907	SF1	63	81.984	Sphenodon_punctatus
ENSORLG00020011834	sf1	69	88.235	ENSSPAG00000019060	sf1	69	88.936	Stegastes_partitus
ENSORLG00020011834	sf1	60	76.291	ENSSSCG00000013021	SF1	71	79.250	Sus_scrofa
ENSORLG00020011834	sf1	74	71.107	ENSTNIG00000004820	sf1	76	74.634	Tetraodon_nigroviridis
ENSORLG00020011834	sf1	58	72.772	ENSTBEG00000013133	SF1	55	75.393	Tupaia_belangeri
ENSORLG00020011834	sf1	58	72.881	ENSTTRG00000008857	SF1	70	75.969	Tursiops_truncatus
ENSORLG00020011834	sf1	60	75.822	ENSUMAG00000007268	SF1	73	80.563	Ursus_maritimus
ENSORLG00020011834	sf1	60	75.587	ENSVVUG00000028585	SF1	71	79.250	Vulpes_vulpes
ENSORLG00020011834	sf1	85	72.572	ENSXETG00000008434	sf1	65	83.029	Xenopus_tropicalis
ENSORLG00020011834	sf1	53	92.857	ENSXCOG00000003704	sf1	73	89.583	Xiphophorus_couchianus
ENSORLG00020011834	sf1	66	89.207	ENSXMAG00000007822	sf1	72	87.633	Xiphophorus_maculatus