EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020011857 (Gene tree)
Gene ID: -
Gene Symbol: scaf4a
Alias: -
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 35503 bases
Position: chr14:9445922-9481424
Accession: 101172836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020010905	RRM_1	PF00076.22	1.3e-07	1	1
ENSORLP00020010934	RRM_1	PF00076.22	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020017665	-	5742	XM_011483331	ENSORLP00020010905	1152 (aa)	XP_011481633	-
ENSORLT00020031560	-	6914	-	ENSORLP00020010934	1321 (aa)	-	-

Gene Model

Click here to download ENSORLG00020011857's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020011857's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020011857	scaf4a	80	78.016	ENSAPOG00000002946	scaf4a	100	70.668	Acanthochromis_polyacanthus
ENSORLG00020011857	scaf4a	64	78.121	ENSAOCG00000000615	scaf4a	100	71.199	Amphiprion_ocellaris
ENSORLG00020011857	scaf4a	64	77.987	ENSAPEG00000021229	scaf4a	100	71.320	Amphiprion_percula
ENSORLG00020011857	scaf4a	56	56.643	ENSAPLG00000002509	SCAF4	71	55.793	Anas_platyrhynchos
ENSORLG00020011857	scaf4a	69	49.003	ENSACLG00000024833	scaf4b	76	53.356	Astatotilapia_calliptera
ENSORLG00020011857	scaf4a	65	54.831	ENSAMXG00000008585	scaf4a	74	58.920	Astyanax_mexicanus
ENSORLG00020011857	scaf4a	52	57.274	ENSCAFG00020026019	SCAF4	70	63.066	Canis_lupus_dingo
ENSORLG00020011857	scaf4a	100	64.351	ENSCSEG00000019549	scaf4a	99	63.682	Cynoglossus_semilaevis
ENSORLG00020011857	scaf4a	86	49.903	ENSDARG00000077093	scaf4a	94	49.344	Danio_rerio
ENSORLG00020011857	scaf4a	61	82.432	ENSELUG00000009909	scaf4a	73	82.432	Esox_lucius
ENSORLG00020011857	scaf4a	66	72.379	ENSFHEG00000017866	scaf4a	64	73.257	Fundulus_heteroclitus
ENSORLG00020011857	scaf4a	57	56.844	ENSGALG00000033965	SCAF4	99	45.939	Gallus_gallus
ENSORLG00020011857	scaf4a	65	75.623	ENSGAFG00000019460	scaf4a	94	72.588	Gambusia_affinis
ENSORLG00020011857	scaf4a	75	65.209	ENSGACG00000020580	scaf4a	86	64.343	Gasterosteus_aculeatus
ENSORLG00020011857	scaf4a	100	68.540	ENSHBUG00000007920	scaf4a	100	67.225	Haplochromis_burtoni
ENSORLG00020011857	scaf4a	55	83.673	ENSHCOG00000006849	scaf4a	78	88.235	Hippocampus_comes
ENSORLG00020011857	scaf4a	57	73.077	ENSIPUG00000011285	scaf4	100	73.077	Ictalurus_punctatus
ENSORLG00020011857	scaf4a	98	65.717	ENSLBEG00000014675	scaf4a	100	65.889	Labrus_bergylta
ENSORLG00020011857	scaf4a	74	54.545	ENSLACG00000013913	SCAF4	81	54.167	Latimeria_chalumnae
ENSORLG00020011857	scaf4a	54	46.958	ENSLOCG00000009162	scaf4a	95	49.508	Lepisosteus_oculatus
ENSORLG00020011857	scaf4a	53	58.896	ENSLAFG00000010710	SCAF4	76	65.203	Loxodonta_africana
ENSORLG00020011857	scaf4a	52	59.311	ENSMNEG00000032966	SCAF4	53	41.294	Macaca_nemestrina
ENSORLG00020011857	scaf4a	74	68.049	ENSMAMG00000013223	scaf4a	100	68.279	Mastacembelus_armatus
ENSORLG00020011857	scaf4a	99	68.475	ENSMZEG00005024349	scaf4a	99	69.126	Maylandia_zebra
ENSORLG00020011857	scaf4a	56	56.294	ENSMGAG00000014515	SCAF4	93	47.768	Meleagris_gallopavo
ENSORLG00020011857	scaf4a	76	77.055	ENSMALG00000013825	scaf4a	91	76.444	Monopterus_albus
ENSORLG00020011857	scaf4a	100	68.216	ENSONIG00000004687	scaf4a	100	68.270	Oreochromis_niloticus
ENSORLG00020011857	scaf4a	100	98.866	ENSORLG00000004384	scaf4a	100	98.866	Oryzias_latipes
ENSORLG00020011857	scaf4a	100	97.364	ENSORLG00015017880	scaf4a	100	97.364	Oryzias_latipes_hsok
ENSORLG00020011857	scaf4a	99	90.275	ENSOMEG00000014482	scaf4a	99	89.243	Oryzias_melastigma
ENSORLG00020011857	scaf4a	59	57.856	ENSPMGG00000016741	scaf4a	99	50.128	Periophthalmus_magnuspinnatus
ENSORLG00020011857	scaf4a	85	76.487	ENSPFOG00000017156	scaf4a	94	75.124	Poecilia_formosa
ENSORLG00020011857	scaf4a	66	76.394	ENSPLAG00000001972	scaf4a	96	75.383	Poecilia_latipinna
ENSORLG00020011857	scaf4a	74	57.678	ENSPNAG00000016892	scaf4a	99	49.384	Pygocentrus_nattereri
ENSORLG00020011857	scaf4a	87	45.009	ENSSFOG00015006338	scaf4a	94	44.828	Scleropages_formosus
ENSORLG00020011857	scaf4a	64	74.502	ENSSMAG00000017901	scaf4a	99	65.534	Scophthalmus_maximus
ENSORLG00020011857	scaf4a	100	71.236	ENSSDUG00000012918	scaf4a	100	70.816	Seriola_dumerili
ENSORLG00020011857	scaf4a	100	71.320	ENSSLDG00000021671	scaf4a	100	69.076	Seriola_lalandi_dorsalis
ENSORLG00020011857	scaf4a	52	64.479	ENSXETG00000007351	scaf4	77	58.356	Xenopus_tropicalis