EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020012199 (Gene tree)
Gene ID: -
Gene Symbol: zic1
Alias: -
Full Name: zic family member 1 (odd-paired homolog%2C Drosophila)
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 3809 bases
Position: chr20:17000490-17004298
Accession: ZDB-GENE-000208-4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020011251	zf-C2H2	PF00096.26	1.3e-21	1	4
ENSORLP00020011251	zf-C2H2	PF00096.26	1.3e-21	2	4
ENSORLP00020011251	zf-C2H2	PF00096.26	1.3e-21	3	4
ENSORLP00020011251	zf-C2H2	PF00096.26	1.3e-21	4	4
ENSORLP00020011251	zf-met	PF12874.7	0.00038	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020031711	-	1077	-	ENSORLP00020011251	358 (aa)	-	-

Gene Model

Click here to download ENSORLG00020012199's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020012199's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020012199	zic1	53	34.228	ENSORLG00020018503	-	50	35.417
ENSORLG00020012199	zic1	65	40.426	ENSORLG00020017514	-	80	40.426
ENSORLG00020012199	zic1	51	46.491	ENSORLG00020009965	-	71	47.222
ENSORLG00020012199	zic1	55	35.484	ENSORLG00020009139	-	97	39.252
ENSORLG00020012199	zic1	56	45.614	ENSORLG00020018069	-	86	45.872
ENSORLG00020012199	zic1	51	41.667	ENSORLG00020000009	znf710b	50	41.667
ENSORLG00020012199	zic1	58	41.228	ENSORLG00020010636	-	72	42.593
ENSORLG00020012199	zic1	54	42.105	ENSORLG00020010171	-	91	44.444
ENSORLG00020012199	zic1	76	43.860	ENSORLG00020017528	-	94	45.370
ENSORLG00020012199	zic1	71	37.805	ENSORLG00020009419	-	84	45.946

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020012199	zic1	92	82.500	ENSG00000152977	ZIC1	89	81.818	Homo_sapiens
ENSORLG00020012199	zic1	87	96.795	ENSACIG00000018732	zic1	91	96.795	Amphilophus_citrinellus
ENSORLG00020012199	zic1	94	57.035	ENSEBUG00000006709	zic1	90	57.381	Eptatretus_burgeri
ENSORLG00020012199	zic1	94	57.035	ENSEBUG00000002180	zic1	90	57.381	Eptatretus_burgeri
ENSORLG00020012199	zic1	74	88.235	ENSFDAG00000013872	ZIC1	100	87.500	Fukomys_damarensis
ENSORLG00020012199	zic1	96	91.553	ENSKMAG00000011689	zic1	92	97.436	Kryptolebias_marmoratus
ENSORLG00020012199	zic1	66	77.215	ENSOANG00000007365	-	73	76.891	Ornithorhynchus_anatinus
ENSORLG00020012199	zic1	63	89.326	ENSSHAG00000015025	ZIC1	78	88.202	Sarcophilus_harrisii