EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020012235 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 3583 bases
Position: chr21:8213874-8217456
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020011294	CMS1	PF14617.6	1.6e-22	1	1
ENSORLP00020011294	DEAD	PF00270.29	6.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020018165	-	681	-	ENSORLP00020011294	226 (aa)	-	-

Gene Model

Click here to download ENSORLG00020012235's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020012235's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020012235	cmss1	99	54.077	ENSG00000184220	CMSS1	96	63.291	Homo_sapiens
ENSORLG00020012235	cmss1	86	74.384	ENSAPOG00000010604	cmss1	96	69.620	Acanthochromis_polyacanthus
ENSORLG00020012235	cmss1	85	58.128	ENSAMEG00000004092	CMSS1	89	54.348	Ailuropoda_melanoleuca
ENSORLG00020012235	cmss1	98	53.612	ENSACIG00000021854	cmss1	98	54.615	Amphilophus_citrinellus
ENSORLG00020012235	cmss1	86	74.877	ENSAOCG00000013361	cmss1	90	64.231	Amphiprion_ocellaris
ENSORLG00020012235	cmss1	86	74.877	ENSAPEG00000005829	cmss1	90	63.985	Amphiprion_percula
ENSORLG00020012235	cmss1	87	70.874	ENSATEG00000008209	cmss1	91	63.052	Anabas_testudineus
ENSORLG00020012235	cmss1	85	55.941	ENSAPLG00000010542	CMSS1	95	55.251	Anas_platyrhynchos
ENSORLG00020012235	cmss1	85	56.931	ENSACAG00000011065	CMSS1	77	56.398	Anolis_carolinensis
ENSORLG00020012235	cmss1	98	54.348	ENSANAG00000023565	CMSS1	87	54.585	Aotus_nancymaae
ENSORLG00020012235	cmss1	86	73.399	ENSACLG00000027294	cmss1	90	62.835	Astatotilapia_calliptera
ENSORLG00020012235	cmss1	85	56.000	ENSAMXG00000002046	cmss1	88	50.579	Astyanax_mexicanus
ENSORLG00020012235	cmss1	85	57.921	ENSBTAG00000013663	CMSS1	76	57.820	Bos_taurus
ENSORLG00020012235	cmss1	98	53.913	ENSCJAG00000000610	CMSS1	87	54.148	Callithrix_jacchus
ENSORLG00020012235	cmss1	85	57.921	ENSCAFG00000009230	CMSS1	83	54.148	Canis_familiaris
ENSORLG00020012235	cmss1	85	54.950	ENSCAFG00020024156	-	68	53.704	Canis_lupus_dingo
ENSORLG00020012235	cmss1	85	57.921	ENSCAFG00020009464	-	84	54.585	Canis_lupus_dingo
ENSORLG00020012235	cmss1	85	57.426	ENSCHIG00000013003	CMSS1	76	57.346	Capra_hircus
ENSORLG00020012235	cmss1	85	57.921	ENSTSYG00000009266	CMSS1	88	54.585	Carlito_syrichta
ENSORLG00020012235	cmss1	80	51.309	ENSCAPG00000013584	CMSS1	88	49.738	Cavia_aperea
ENSORLG00020012235	cmss1	85	58.000	ENSCPOG00000014680	CMSS1	82	55.895	Cavia_porcellus
ENSORLG00020012235	cmss1	98	54.348	ENSCCAG00000034685	CMSS1	87	54.585	Cebus_capucinus
ENSORLG00020012235	cmss1	99	54.506	ENSCATG00000031980	CMSS1	88	54.585	Cercocebus_atys
ENSORLG00020012235	cmss1	85	56.500	ENSCLAG00000011241	CMSS1	98	53.712	Chinchilla_lanigera
ENSORLG00020012235	cmss1	99	54.506	ENSCSAG00000006024	CMSS1	93	54.585	Chlorocebus_sabaeus
ENSORLG00020012235	cmss1	85	41.667	ENSCHOG00000012098	CMSS1	83	39.914	Choloepus_hoffmanni
ENSORLG00020012235	cmss1	81	40.201	ENSCING00000014848	-	99	40.000	Ciona_intestinalis
ENSORLG00020012235	cmss1	51	37.209	ENSCSAVG00000002309	-	99	37.209	Ciona_savignyi
ENSORLG00020012235	cmss1	99	54.506	ENSCANG00000031337	CMSS1	88	54.585	Colobus_angolensis_palliatus
ENSORLG00020012235	cmss1	85	54.950	ENSCGRG00001014305	Cmss1	82	51.965	Cricetulus_griseus_chok1gshd
ENSORLG00020012235	cmss1	99	51.502	ENSCGRG00000006722	Cmss1	89	51.965	Cricetulus_griseus_crigri
ENSORLG00020012235	cmss1	86	68.473	ENSCSEG00000004958	cmss1	72	66.667	Cynoglossus_semilaevis
ENSORLG00020012235	cmss1	99	67.382	ENSCVAG00000005039	cmss1	77	70.588	Cyprinodon_variegatus
ENSORLG00020012235	cmss1	86	60.591	ENSDARG00000112579	cmss1	78	56.828	Danio_rerio
ENSORLG00020012235	cmss1	85	57.921	ENSDNOG00000040418	CMSS1	83	54.148	Dasypus_novemcinctus
ENSORLG00020012235	cmss1	85	56.000	ENSDORG00000010461	Cmss1	76	55.450	Dipodomys_ordii
ENSORLG00020012235	cmss1	54	39.394	ENSEBUG00000002156	-	96	39.394	Eptatretus_burgeri
ENSORLG00020012235	cmss1	85	56.500	ENSEASG00005010966	CMSS1	100	55.000	Equus_asinus_asinus
ENSORLG00020012235	cmss1	85	56.000	ENSECAG00000015662	CMSS1	95	55.556	Equus_caballus
ENSORLG00020012235	cmss1	64	62.712	ENSEEUG00000007624	-	60	61.628	Erinaceus_europaeus
ENSORLG00020012235	cmss1	86	62.069	ENSELUG00000019459	cmss1	80	57.322	Esox_lucius
ENSORLG00020012235	cmss1	85	57.500	ENSFCAG00000044577	CMSS1	82	54.148	Felis_catus
ENSORLG00020012235	cmss1	85	54.950	ENSFALG00000005816	CMSS1	97	52.838	Ficedula_albicollis
ENSORLG00020012235	cmss1	85	57.921	ENSFDAG00000012577	CMSS1	100	55.702	Fukomys_damarensis
ENSORLG00020012235	cmss1	93	70.776	ENSFHEG00000012008	cmss1	90	70.776	Fundulus_heteroclitus
ENSORLG00020012235	cmss1	93	61.607	ENSGMOG00000016729	cmss1	82	61.135	Gadus_morhua
ENSORLG00020012235	cmss1	85	56.931	ENSGALG00000015267	CMSS1	88	54.585	Gallus_gallus
ENSORLG00020012235	cmss1	99	62.977	ENSGAFG00000021217	cmss1	98	63.953	Gambusia_affinis
ENSORLG00020012235	cmss1	86	69.458	ENSGACG00000002798	cmss1	75	69.712	Gasterosteus_aculeatus
ENSORLG00020012235	cmss1	98	52.174	ENSGAGG00000019861	CMSS1	89	52.402	Gopherus_agassizii
ENSORLG00020012235	cmss1	99	54.506	ENSGGOG00000014125	CMSS1	88	55.022	Gorilla_gorilla
ENSORLG00020012235	cmss1	99	62.357	ENSHBUG00000008431	cmss1	92	63.846	Haplochromis_burtoni
ENSORLG00020012235	cmss1	85	58.000	ENSHGLG00000019481	CMSS1	88	57.870	Heterocephalus_glaber_female
ENSORLG00020012235	cmss1	85	58.000	ENSHGLG00100010314	CMSS1	87	57.870	Heterocephalus_glaber_male
ENSORLG00020012235	cmss1	86	67.980	ENSHCOG00000003222	cmss1	72	68.246	Hippocampus_comes
ENSORLG00020012235	cmss1	99	57.759	ENSIPUG00000011591	cmss1	78	59.111	Ictalurus_punctatus
ENSORLG00020012235	cmss1	85	57.426	ENSSTOG00000019366	CMSS1	82	54.148	Ictidomys_tridecemlineatus
ENSORLG00020012235	cmss1	86	56.863	ENSJJAG00000014894	Cmss1	91	56.863	Jaculus_jaculus
ENSORLG00020012235	cmss1	100	56.735	ENSKMAG00000002390	cmss1	96	59.746	Kryptolebias_marmoratus
ENSORLG00020012235	cmss1	99	61.224	ENSLBEG00000006298	cmss1	94	62.609	Labrus_bergylta
ENSORLG00020012235	cmss1	85	59.406	ENSLACG00000009293	CMSS1	92	58.768	Latimeria_chalumnae
ENSORLG00020012235	cmss1	100	50.566	ENSLOCG00000009391	cmss1	75	60.190	Lepisosteus_oculatus
ENSORLG00020012235	cmss1	85	57.000	ENSLAFG00000017509	CMSS1	100	54.825	Loxodonta_africana
ENSORLG00020012235	cmss1	99	54.936	ENSMFAG00000045006	CMSS1	88	55.022	Macaca_fascicularis
ENSORLG00020012235	cmss1	99	54.506	ENSMMUG00000002939	CMSS1	97	54.587	Macaca_mulatta
ENSORLG00020012235	cmss1	99	54.936	ENSMNEG00000031315	CMSS1	88	55.022	Macaca_nemestrina
ENSORLG00020012235	cmss1	99	54.077	ENSMLEG00000033660	CMSS1	88	54.148	Mandrillus_leucophaeus
ENSORLG00020012235	cmss1	86	75.369	ENSMAMG00000017176	cmss1	76	72.273	Mastacembelus_armatus
ENSORLG00020012235	cmss1	86	73.399	ENSMZEG00005021886	cmss1	90	62.835	Maylandia_zebra
ENSORLG00020012235	cmss1	85	56.931	ENSMGAG00000014360	CMSS1	93	57.820	Meleagris_gallopavo
ENSORLG00020012235	cmss1	99	39.910	ENSMAUG00000020609	Cmss1	78	40.000	Mesocricetus_auratus
ENSORLG00020012235	cmss1	85	59.500	ENSMICG00000048977	CMSS1	88	56.769	Microcebus_murinus
ENSORLG00020012235	cmss1	99	51.502	ENSMOCG00000021937	Cmss1	83	51.965	Microtus_ochrogaster
ENSORLG00020012235	cmss1	98	64.854	ENSMMOG00000019794	cmss1	97	65.517	Mola_mola
ENSORLG00020012235	cmss1	97	55.022	ENSMODG00000002275	CMSS1	86	54.585	Monodelphis_domestica
ENSORLG00020012235	cmss1	86	74.384	ENSMALG00000004250	cmss1	76	71.364	Monopterus_albus
ENSORLG00020012235	cmss1	85	55.941	MGP_CAROLIEiJ_G0020824	Cmss1	76	55.924	Mus_caroli
ENSORLG00020012235	cmss1	85	54.950	ENSMUSG00000022748	Cmss1	76	54.976	Mus_musculus
ENSORLG00020012235	cmss1	85	55.446	MGP_PahariEiJ_G0016524	Cmss1	76	55.450	Mus_pahari
ENSORLG00020012235	cmss1	85	54.950	MGP_SPRETEiJ_G0021724	Cmss1	76	54.976	Mus_spretus
ENSORLG00020012235	cmss1	84	57.286	ENSMPUG00000011324	CMSS1	88	53.509	Mustela_putorius_furo
ENSORLG00020012235	cmss1	85	56.931	ENSMLUG00000001131	CMSS1	88	54.113	Myotis_lucifugus
ENSORLG00020012235	cmss1	85	55.446	ENSNGAG00000020316	Cmss1	82	52.838	Nannospalax_galili
ENSORLG00020012235	cmss1	86	72.906	ENSNBRG00000003095	cmss1	90	62.452	Neolamprologus_brichardi
ENSORLG00020012235	cmss1	99	54.936	ENSNLEG00000034172	CMSS1	88	55.459	Nomascus_leucogenys
ENSORLG00020012235	cmss1	85	48.020	ENSMEUG00000014505	CMSS1	100	46.053	Notamacropus_eugenii
ENSORLG00020012235	cmss1	85	56.931	ENSOPRG00000002986	CMSS1	76	56.398	Ochotona_princeps
ENSORLG00020012235	cmss1	85	58.000	ENSODEG00000005226	-	82	55.022	Octodon_degus
ENSORLG00020012235	cmss1	85	57.426	ENSODEG00000003558	-	84	54.386	Octodon_degus
ENSORLG00020012235	cmss1	98	49.774	ENSODEG00000001853	-	82	49.545	Octodon_degus
ENSORLG00020012235	cmss1	85	53.886	ENSODEG00000009446	-	87	52.336	Octodon_degus
ENSORLG00020012235	cmss1	97	62.069	ENSONIG00000006678	cmss1	100	63.602	Oreochromis_niloticus
ENSORLG00020012235	cmss1	99	52.083	ENSOANG00000007529	CMSS1	89	57.488	Ornithorhynchus_anatinus
ENSORLG00020012235	cmss1	85	57.426	ENSOCUG00000025366	CMSS1	76	56.872	Oryctolagus_cuniculus
ENSORLG00020012235	cmss1	97	77.132	ENSORLG00000020340	cmss1	93	78.030	Oryzias_latipes
ENSORLG00020012235	cmss1	99	81.749	ENSORLG00015015551	cmss1	100	81.749	Oryzias_latipes_hsok
ENSORLG00020012235	cmss1	97	71.429	ENSOMEG00000012555	cmss1	90	72.587	Oryzias_melastigma
ENSORLG00020012235	cmss1	85	58.416	ENSOGAG00000002045	CMSS1	100	55.263	Otolemur_garnettii
ENSORLG00020012235	cmss1	85	57.635	ENSOARG00000017899	CMSS1	73	58.019	Ovis_aries
ENSORLG00020012235	cmss1	99	54.506	ENSPPAG00000038515	CMSS1	86	54.894	Pan_paniscus
ENSORLG00020012235	cmss1	85	57.500	ENSPPRG00000016767	CMSS1	82	54.148	Panthera_pardus
ENSORLG00020012235	cmss1	85	57.000	ENSPTIG00000018274	CMSS1	82	53.712	Panthera_tigris_altaica
ENSORLG00020012235	cmss1	99	54.506	ENSPTRG00000015157	CMSS1	96	54.894	Pan_troglodytes
ENSORLG00020012235	cmss1	97	54.825	ENSPANG00000019980	CMSS1	91	54.825	Papio_anubis
ENSORLG00020012235	cmss1	99	52.075	ENSPKIG00000012609	cmss1	77	61.058	Paramormyrops_kingsleyae
ENSORLG00020012235	cmss1	97	52.838	ENSPSIG00000003849	CMSS1	100	52.402	Pelodiscus_sinensis
ENSORLG00020012235	cmss1	86	69.118	ENSPMGG00000010286	cmss1	100	65.086	Periophthalmus_magnuspinnatus
ENSORLG00020012235	cmss1	98	53.913	ENSPEMG00000016384	Cmss1	82	54.148	Peromyscus_maniculatus_bairdii
ENSORLG00020012235	cmss1	86	46.078	ENSPMAG00000001146	cmss1	100	46.078	Petromyzon_marinus
ENSORLG00020012235	cmss1	99	54.077	ENSPCIG00000015656	CMSS1	87	54.585	Phascolarctos_cinereus
ENSORLG00020012235	cmss1	90	73.709	ENSPFOG00000016849	cmss1	74	73.709	Poecilia_formosa
ENSORLG00020012235	cmss1	90	73.239	ENSPLAG00000008323	cmss1	74	73.239	Poecilia_latipinna
ENSORLG00020012235	cmss1	90	74.178	ENSPMEG00000021020	cmss1	74	74.178	Poecilia_mexicana
ENSORLG00020012235	cmss1	97	61.686	ENSPREG00000007618	cmss1	72	72.770	Poecilia_reticulata
ENSORLG00020012235	cmss1	99	54.077	ENSPPYG00000013606	CMSS1	84	54.585	Pongo_abelii
ENSORLG00020012235	cmss1	85	58.500	ENSPCOG00000020035	CMSS1	88	54.585	Propithecus_coquereli
ENSORLG00020012235	cmss1	85	46.000	ENSPVAG00000017031	CMSS1	82	44.105	Pteropus_vampyrus
ENSORLG00020012235	cmss1	74	73.446	ENSPNYG00000013428	cmss1	86	61.702	Pundamilia_nyererei
ENSORLG00020012235	cmss1	86	60.099	ENSPNAG00000007912	cmss1	76	57.965	Pygocentrus_nattereri
ENSORLG00020012235	cmss1	85	54.950	ENSRNOG00000027888	Cmss1	82	54.976	Rattus_norvegicus
ENSORLG00020012235	cmss1	99	54.077	ENSRBIG00000037931	CMSS1	88	54.148	Rhinopithecus_bieti
ENSORLG00020012235	cmss1	99	54.077	ENSRROG00000042910	CMSS1	88	54.148	Rhinopithecus_roxellana
ENSORLG00020012235	cmss1	98	54.077	ENSSBOG00000030980	CMSS1	87	54.310	Saimiri_boliviensis_boliviensis
ENSORLG00020012235	cmss1	85	57.921	ENSSHAG00000009321	CMSS1	91	54.585	Sarcophilus_harrisii
ENSORLG00020012235	cmss1	86	63.547	ENSSFOG00015001509	cmss1	72	63.462	Scleropages_formosus
ENSORLG00020012235	cmss1	95	61.719	ENSSMAG00000001653	cmss1	74	70.561	Scophthalmus_maximus
ENSORLG00020012235	cmss1	86	76.355	ENSSDUG00000007719	cmss1	76	72.273	Seriola_dumerili
ENSORLG00020012235	cmss1	88	76.329	ENSSLDG00000012300	cmss1	70	76.329	Seriola_lalandi_dorsalis
ENSORLG00020012235	cmss1	85	46.535	ENSSARG00000003584	CMSS1	75	46.445	Sorex_araneus
ENSORLG00020012235	cmss1	93	52.968	ENSSPUG00000003865	CMSS1	97	52.968	Sphenodon_punctatus
ENSORLG00020012235	cmss1	99	64.706	ENSSPAG00000019182	cmss1	78	64.542	Stegastes_partitus
ENSORLG00020012235	cmss1	85	56.000	ENSSSCG00000011970	CMSS1	76	55.924	Sus_scrofa
ENSORLG00020012235	cmss1	85	54.950	ENSTGUG00000013635	CMSS1	100	51.965	Taeniopygia_guttata
ENSORLG00020012235	cmss1	94	61.600	ENSTRUG00000015265	cmss1	81	66.376	Takifugu_rubripes
ENSORLG00020012235	cmss1	86	62.562	ENSTNIG00000002880	cmss1	76	62.085	Tetraodon_nigroviridis
ENSORLG00020012235	cmss1	57	67.500	ENSTBEG00000016722	CMSS1	55	57.955	Tupaia_belangeri
ENSORLG00020012235	cmss1	85	54.950	ENSTTRG00000001562	CMSS1	75	55.450	Tursiops_truncatus
ENSORLG00020012235	cmss1	85	58.416	ENSUAMG00000024209	CMSS1	95	57.820	Ursus_americanus
ENSORLG00020012235	cmss1	85	57.921	ENSUMAG00000001983	CMSS1	88	54.148	Ursus_maritimus
ENSORLG00020012235	cmss1	67	55.625	ENSVPAG00000000263	CMSS1	57	55.625	Vicugna_pacos
ENSORLG00020012235	cmss1	85	58.000	ENSVVUG00000021647	-	93	55.022	Vulpes_vulpes
ENSORLG00020012235	cmss1	85	57.426	ENSVVUG00000007776	-	85	56.019	Vulpes_vulpes
ENSORLG00020012235	cmss1	86	52.217	ENSXETG00000011858	cmss1	79	52.036	Xenopus_tropicalis
ENSORLG00020012235	cmss1	88	75.000	ENSXCOG00000018724	cmss1	71	75.000	Xiphophorus_couchianus
ENSORLG00020012235	cmss1	99	63.158	ENSXMAG00000011243	cmss1	78	75.000	Xiphophorus_maculatus