EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020012671 (Gene tree)
Gene ID: -
Gene Symbol: pcbp3
Alias: -
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 17465 bases
Position: chr2:2029281-2046745
Accession: ZDB-GENE-050522-157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020028921	KH_1	PF00013.29	1.2e-54	1	3
ENSORLP00020028921	KH_1	PF00013.29	1.2e-54	2	3
ENSORLP00020028921	KH_1	PF00013.29	1.2e-54	3	3
ENSORLP00020028921	KH_2	PF07650.17	2.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020018676	-	957	-	ENSORLP00020028921	318 (aa)	-	-

Gene Model

Click here to download ENSORLG00020012671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020012671's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020012671	pcbp3	95	80.464	ENSORLG00020017901	PCBP2	95	80.464
ENSORLG00020012671	pcbp3	96	78.387	ENSORLG00020016290	pcbp2	97	78.387
ENSORLG00020012671	pcbp3	76	55.556	ENSORLG00020008118	hnrpkl	56	55.556
ENSORLG00020012671	pcbp3	75	40.299	ENSORLG00020004573	nova1	52	40.299
ENSORLG00020012671	pcbp3	74	36.842	ENSORLG00020005908	fubp1	57	37.681
ENSORLG00020012671	pcbp3	97	34.884	ENSORLG00020013143	-	70	34.884
ENSORLG00020012671	pcbp3	95	35.211	ENSORLG00020003562	igf2bp3	62	35.211
ENSORLG00020012671	pcbp3	96	73.871	ENSORLG00020003139	zgc:110045	86	71.429
ENSORLG00020012671	pcbp3	95	62.577	ENSORLG00020001183	-	71	62.577
ENSORLG00020012671	pcbp3	99	95.298	ENSORLG00020006124	-	99	95.298
ENSORLG00020012671	pcbp3	92	35.393	ENSORLG00020001556	igf2bp2b	66	34.118
ENSORLG00020012671	pcbp3	92	38.806	ENSORLG00020019124	-	60	38.806
ENSORLG00020012671	pcbp3	94	38.462	ENSORLG00020019624	fubp3	63	38.462
ENSORLG00020012671	pcbp3	90	31.387	ENSORLG00020018835	igf2bp1	57	31.387
ENSORLG00020012671	pcbp3	78	55.556	ENSORLG00020019741	hnrnpk	58	55.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020012671	pcbp3	97	97.742	ENSAPOG00000016582	-	95	97.742	Acanthochromis_polyacanthus
ENSORLG00020012671	pcbp3	97	97.419	ENSAPOG00000020003	pcbp3	86	97.419	Acanthochromis_polyacanthus
ENSORLG00020012671	pcbp3	95	90.683	ENSAMEG00000001697	-	95	86.350	Ailuropoda_melanoleuca
ENSORLG00020012671	pcbp3	99	91.411	ENSACIG00000002739	-	99	91.411	Amphilophus_citrinellus
ENSORLG00020012671	pcbp3	97	90.390	ENSACIG00000010933	pcbp3	95	90.390	Amphilophus_citrinellus
ENSORLG00020012671	pcbp3	93	93.262	ENSAOCG00000007806	-	96	93.262	Amphiprion_ocellaris
ENSORLG00020012671	pcbp3	99	99.365	ENSAOCG00000008592	-	99	99.365	Amphiprion_ocellaris
ENSORLG00020012671	pcbp3	99	94.044	ENSAPEG00000005209	-	99	94.044	Amphiprion_percula
ENSORLG00020012671	pcbp3	97	92.537	ENSAPEG00000008011	pcbp3	95	92.537	Amphiprion_percula
ENSORLG00020012671	pcbp3	99	93.730	ENSATEG00000009833	-	99	93.730	Anabas_testudineus
ENSORLG00020012671	pcbp3	97	90.691	ENSATEG00000015787	-	100	90.691	Anabas_testudineus
ENSORLG00020012671	pcbp3	97	90.798	ENSAPLG00000002975	-	98	90.798	Anas_platyrhynchos
ENSORLG00020012671	pcbp3	95	77.143	ENSAPLG00000008951	-	78	77.143	Anas_platyrhynchos
ENSORLG00020012671	pcbp3	97	83.662	ENSACAG00000004607	-	98	83.662	Anolis_carolinensis
ENSORLG00020012671	pcbp3	97	82.388	ENSACAG00000009819	-	97	82.388	Anolis_carolinensis
ENSORLG00020012671	pcbp3	93	95.595	ENSANAG00000030702	-	95	95.595	Aotus_nancymaae
ENSORLG00020012671	pcbp3	97	97.097	ENSACLG00000003801	-	97	97.097	Astatotilapia_calliptera
ENSORLG00020012671	pcbp3	97	92.239	ENSACLG00000011835	pcbp3	95	92.239	Astatotilapia_calliptera
ENSORLG00020012671	pcbp3	97	90.991	ENSAMXG00000003440	pcbp3	95	90.991	Astyanax_mexicanus
ENSORLG00020012671	pcbp3	97	92.258	ENSAMXG00000013588	-	100	92.258	Astyanax_mexicanus
ENSORLG00020012671	pcbp3	95	67.683	ENSAMXG00000001760	zgc:110045	72	67.683	Astyanax_mexicanus
ENSORLG00020012671	pcbp3	90	96.507	ENSCAFG00020019472	-	81	96.507	Canis_lupus_dingo
ENSORLG00020012671	pcbp3	95	96.370	ENSCSAG00000007440	-	86	96.370	Chlorocebus_sabaeus
ENSORLG00020012671	pcbp3	95	96.700	ENSCPBG00000012151	-	98	89.458	Chrysemys_picta_bellii
ENSORLG00020012671	pcbp3	95	83.077	ENSCPBG00000000733	-	72	83.077	Chrysemys_picta_bellii
ENSORLG00020012671	pcbp3	99	77.101	ENSCSEG00000016984	-	99	77.101	Cynoglossus_semilaevis
ENSORLG00020012671	pcbp3	97	95.484	ENSCSEG00000000822	pcbp3	99	95.484	Cynoglossus_semilaevis
ENSORLG00020012671	pcbp3	99	95.611	ENSCVAG00000005262	-	99	95.611	Cyprinodon_variegatus
ENSORLG00020012671	pcbp3	97	92.239	ENSCVAG00000014482	pcbp3	95	92.239	Cyprinodon_variegatus
ENSORLG00020012671	pcbp3	99	90.058	ENSDARG00000054378	pcbp3	99	90.058	Danio_rerio
ENSORLG00020012671	pcbp3	95	81.848	ENSETEG00000015988	-	95	81.848	Echinops_telfairi
ENSORLG00020012671	pcbp3	92	74.336	ENSEBUG00000005495	pcbp3	68	74.336	Eptatretus_burgeri
ENSORLG00020012671	pcbp3	95	81.046	ENSEBUG00000007485	-	92	81.735	Eptatretus_burgeri
ENSORLG00020012671	pcbp3	93	75.000	ENSEBUG00000016192	pcbp3	99	75.000	Eptatretus_burgeri
ENSORLG00020012671	pcbp3	97	97.419	ENSELUG00000001560	-	86	97.419	Esox_lucius
ENSORLG00020012671	pcbp3	97	91.071	ENSELUG00000003521	pcbp3	95	91.071	Esox_lucius
ENSORLG00020012671	pcbp3	97	94.551	ENSFALG00000003949	-	98	94.551	Ficedula_albicollis
ENSORLG00020012671	pcbp3	95	77.429	ENSFALG00000004411	-	74	77.429	Ficedula_albicollis
ENSORLG00020012671	pcbp3	99	93.417	ENSFHEG00000006539	-	99	93.417	Fundulus_heteroclitus
ENSORLG00020012671	pcbp3	97	97.097	ENSFHEG00000016615	pcbp3	95	97.097	Fundulus_heteroclitus
ENSORLG00020012671	pcbp3	97	70.091	ENSGMOG00000008611	-	100	70.091	Gadus_morhua
ENSORLG00020012671	pcbp3	97	81.982	ENSGMOG00000011992	pcbp3	96	82.036	Gadus_morhua
ENSORLG00020012671	pcbp3	97	81.127	ENSGALG00000004394	-	98	89.130	Gallus_gallus
ENSORLG00020012671	pcbp3	96	83.180	ENSGALG00000013155	-	98	80.428	Gallus_gallus
ENSORLG00020012671	pcbp3	97	97.097	ENSGAFG00000010274	-	95	97.097	Gambusia_affinis
ENSORLG00020012671	pcbp3	97	88.889	ENSGAFG00000011430	pcbp3	96	88.889	Gambusia_affinis
ENSORLG00020012671	pcbp3	98	82.203	ENSGACG00000014955	-	97	82.203	Gasterosteus_aculeatus
ENSORLG00020012671	pcbp3	97	90.854	ENSGACG00000002266	-	96	90.854	Gasterosteus_aculeatus
ENSORLG00020012671	pcbp3	77	87.368	ENSGAGG00000006956	-	76	87.368	Gopherus_agassizii
ENSORLG00020012671	pcbp3	92	88.390	ENSGAGG00000000271	-	100	88.390	Gopherus_agassizii
ENSORLG00020012671	pcbp3	97	96.774	ENSHBUG00000010697	pcbp3	98	96.774	Haplochromis_burtoni
ENSORLG00020012671	pcbp3	97	97.097	ENSHBUG00000021782	-	97	97.097	Haplochromis_burtoni
ENSORLG00020012671	pcbp3	97	92.258	ENSHCOG00000006067	-	96	92.258	Hippocampus_comes
ENSORLG00020012671	pcbp3	97	92.515	ENSHCOG00000017868	pcbp3	95	92.515	Hippocampus_comes
ENSORLG00020012671	pcbp3	99	93.103	ENSIPUG00000006238	pcbp3	99	93.103	Ictalurus_punctatus
ENSORLG00020012671	pcbp3	97	96.129	ENSKMAG00000018530	-	95	96.129	Kryptolebias_marmoratus
ENSORLG00020012671	pcbp3	97	92.239	ENSKMAG00000003046	pcbp3	95	92.239	Kryptolebias_marmoratus
ENSORLG00020012671	pcbp3	97	97.097	ENSLBEG00000006201	pcbp3	95	97.097	Labrus_bergylta
ENSORLG00020012671	pcbp3	97	80.635	ENSLBEG00000006542	-	99	79.630	Labrus_bergylta
ENSORLG00020012671	pcbp3	95	77.522	ENSLACG00000010804	zgc:110045	73	77.522	Latimeria_chalumnae
ENSORLG00020012671	pcbp3	95	83.046	ENSLACG00000010386	pcbp3	73	83.046	Latimeria_chalumnae
ENSORLG00020012671	pcbp3	95	82.769	ENSLOCG00000005058	zgc:110045	79	82.769	Lepisosteus_oculatus
ENSORLG00020012671	pcbp3	97	89.458	ENSLOCG00000009369	pcbp3	98	89.458	Lepisosteus_oculatus
ENSORLG00020012671	pcbp3	99	96.178	ENSMAMG00000022336	pcbp3	94	96.178	Mastacembelus_armatus
ENSORLG00020012671	pcbp3	97	93.871	ENSMAMG00000011620	-	97	93.871	Mastacembelus_armatus
ENSORLG00020012671	pcbp3	99	88.496	ENSMZEG00005008993	pcbp3	99	88.496	Maylandia_zebra
ENSORLG00020012671	pcbp3	97	86.916	ENSMZEG00005014882	-	95	87.539	Maylandia_zebra
ENSORLG00020012671	pcbp3	95	77.429	ENSMGAG00000006794	-	74	77.429	Meleagris_gallopavo
ENSORLG00020012671	pcbp3	96	80.058	ENSMGAG00000001883	-	96	80.347	Meleagris_gallopavo
ENSORLG00020012671	pcbp3	97	94.516	ENSMMOG00000005216	-	96	94.516	Mola_mola
ENSORLG00020012671	pcbp3	97	96.154	ENSMMOG00000000730	pcbp3	88	96.154	Mola_mola
ENSORLG00020012671	pcbp3	71	76.168	ENSMODG00000027884	-	93	76.168	Monodelphis_domestica
ENSORLG00020012671	pcbp3	97	90.390	ENSMALG00000000691	pcbp3	95	90.390	Monopterus_albus
ENSORLG00020012671	pcbp3	95	83.901	ENSMPUG00000001779	-	87	83.901	Mustela_putorius_furo
ENSORLG00020012671	pcbp3	97	90.090	ENSNBRG00000016409	-	95	90.090	Neolamprologus_brichardi
ENSORLG00020012671	pcbp3	97	87.539	ENSNBRG00000016714	-	98	84.802	Neolamprologus_brichardi
ENSORLG00020012671	pcbp3	95	81.449	ENSOPRG00000003431	-	99	81.449	Ochotona_princeps
ENSORLG00020012671	pcbp3	97	97.097	ENSONIG00000004611	-	97	97.097	Oreochromis_niloticus
ENSORLG00020012671	pcbp3	99	86.555	ENSONIG00000012122	-	99	86.555	Oreochromis_niloticus
ENSORLG00020012671	pcbp3	97	94.231	ENSOCUG00000002696	-	89	94.231	Oryctolagus_cuniculus
ENSORLG00020012671	pcbp3	97	100.000	ENSORLG00000000059	pcbp3	100	100.000	Oryzias_latipes
ENSORLG00020012671	pcbp3	99	95.611	ENSORLG00000022739	-	99	95.611	Oryzias_latipes
ENSORLG00020012671	pcbp3	100	100.000	ENSORLG00015000429	pcbp3	100	100.000	Oryzias_latipes_hsok
ENSORLG00020012671	pcbp3	97	97.097	ENSORLG00015008051	-	95	97.097	Oryzias_latipes_hsok
ENSORLG00020012671	pcbp3	95	98.616	ENSOMEG00000020811	pcbp3	100	98.616	Oryzias_melastigma
ENSORLG00020012671	pcbp3	99	95.298	ENSOMEG00000020162	-	99	95.298	Oryzias_melastigma
ENSORLG00020012671	pcbp3	95	82.808	ENSOGAG00000008044	-	96	82.808	Otolemur_garnettii
ENSORLG00020012671	pcbp3	97	96.774	ENSPKIG00000019329	pcbp3	97	94.839	Paramormyrops_kingsleyae
ENSORLG00020012671	pcbp3	77	84.211	ENSPKIG00000020913	-	82	84.211	Paramormyrops_kingsleyae
ENSORLG00020012671	pcbp3	97	81.459	ENSPSIG00000014970	-	95	83.125	Pelodiscus_sinensis
ENSORLG00020012671	pcbp3	91	80.328	ENSPSIG00000008350	-	67	80.328	Pelodiscus_sinensis
ENSORLG00020012671	pcbp3	97	92.771	ENSPMGG00000022383	pcbp3	95	92.771	Periophthalmus_magnuspinnatus
ENSORLG00020012671	pcbp3	77	89.362	ENSPMAG00000004637	-	97	89.362	Petromyzon_marinus
ENSORLG00020012671	pcbp3	96	74.757	ENSPMAG00000004551	pcbp3	88	74.757	Petromyzon_marinus
ENSORLG00020012671	pcbp3	97	88.358	ENSPCIG00000028092	-	96	91.244	Phascolarctos_cinereus
ENSORLG00020012671	pcbp3	97	83.853	ENSPLAG00000011449	pcbp3	88	83.853	Poecilia_latipinna
ENSORLG00020012671	pcbp3	96	90.909	ENSPLAG00000004074	-	89	90.909	Poecilia_latipinna
ENSORLG00020012671	pcbp3	97	91.964	ENSPMEG00000021239	pcbp3	95	91.964	Poecilia_mexicana
ENSORLG00020012671	pcbp3	99	86.957	ENSPMEG00000006653	-	99	86.765	Poecilia_mexicana
ENSORLG00020012671	pcbp3	97	95.192	ENSPREG00000015736	pcbp3	99	95.192	Poecilia_reticulata
ENSORLG00020012671	pcbp3	99	93.103	ENSPREG00000020585	-	99	93.103	Poecilia_reticulata
ENSORLG00020012671	pcbp3	97	94.516	ENSPNYG00000013205	-	96	94.516	Pundamilia_nyererei
ENSORLG00020012671	pcbp3	97	97.097	ENSPNYG00000012326	pcbp3	95	97.097	Pundamilia_nyererei
ENSORLG00020012671	pcbp3	99	96.238	ENSPNAG00000015104	pcbp3	99	96.238	Pygocentrus_nattereri
ENSORLG00020012671	pcbp3	97	92.857	ENSPNAG00000008541	-	98	92.857	Pygocentrus_nattereri
ENSORLG00020012671	pcbp3	97	94.872	ENSRNOG00000001245	Pcbp3	98	94.872	Rattus_norvegicus
ENSORLG00020012671	pcbp3	95	84.444	ENSRBIG00000028177	-	87	84.444	Rhinopithecus_bieti
ENSORLG00020012671	pcbp3	95	90.093	ENSSHAG00000007890	-	95	90.093	Sarcophilus_harrisii
ENSORLG00020012671	pcbp3	97	97.419	ENSSFOG00015010205	pcbp3	95	97.419	Scleropages_formosus
ENSORLG00020012671	pcbp3	97	89.189	ENSSFOG00015014706	pcbp3	95	89.189	Scleropages_formosus
ENSORLG00020012671	pcbp3	96	83.987	ENSSFOG00015007118	-	94	83.987	Scleropages_formosus
ENSORLG00020012671	pcbp3	99	95.298	ENSSMAG00000003135	-	99	95.298	Scophthalmus_maximus
ENSORLG00020012671	pcbp3	99	96.497	ENSSMAG00000011929	pcbp3	99	96.497	Scophthalmus_maximus
ENSORLG00020012671	pcbp3	97	91.054	ENSSDUG00000008502	-	95	91.054	Seriola_dumerili
ENSORLG00020012671	pcbp3	97	89.851	ENSSDUG00000011608	pcbp3	99	89.851	Seriola_dumerili
ENSORLG00020012671	pcbp3	97	89.851	ENSSLDG00000008518	pcbp3	99	89.851	Seriola_lalandi_dorsalis
ENSORLG00020012671	pcbp3	97	97.742	ENSSLDG00000020161	-	95	97.742	Seriola_lalandi_dorsalis
ENSORLG00020012671	pcbp3	93	80.756	ENSSPUG00000013214	-	88	85.128	Sphenodon_punctatus
ENSORLG00020012671	pcbp3	97	79.279	ENSSPAG00000023341	-	95	79.279	Stegastes_partitus
ENSORLG00020012671	pcbp3	93	93.262	ENSSPAG00000004190	-	96	93.262	Stegastes_partitus
ENSORLG00020012671	pcbp3	97	86.145	ENSTGUG00000003316	-	98	86.145	Taeniopygia_guttata
ENSORLG00020012671	pcbp3	97	88.462	ENSTGUG00000008158	-	98	88.462	Taeniopygia_guttata
ENSORLG00020012671	pcbp3	95	95.804	ENSTRUG00000006280	-	91	95.804	Takifugu_rubripes
ENSORLG00020012671	pcbp3	97	93.498	ENSTRUG00000013604	pcbp3	95	93.498	Takifugu_rubripes
ENSORLG00020012671	pcbp3	95	83.237	ENSTTRG00000015075	-	96	83.237	Tursiops_truncatus
ENSORLG00020012671	pcbp3	97	88.253	ENSXETG00000011483	pcbp1	98	88.253	Xenopus_tropicalis
ENSORLG00020012671	pcbp3	91	76.190	ENSXETG00000010491	pcbp2	74	76.190	Xenopus_tropicalis
ENSORLG00020012671	pcbp3	97	91.964	ENSXCOG00000020481	pcbp3	95	91.964	Xiphophorus_couchianus
ENSORLG00020012671	pcbp3	97	97.419	ENSXMAG00000028711	-	95	97.419	Xiphophorus_maculatus
ENSORLG00020012671	pcbp3	97	92.537	ENSXMAG00000008175	pcbp3	95	92.537	Xiphophorus_maculatus