EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020013127 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: -
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 28440 bases
Position: chr16:27313454-27341893
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020029204	EST1	PF10374.9	1.4e-23	1	1
ENSORLP00020029215	EST1	PF10374.9	1.6e-23	1	1
ENSORLP00020029215	EST1_DNA_bind	PF10373.9	3.5e-41	1	1
ENSORLP00020029204	EST1_DNA_bind	PF10373.9	4.6e-40	1	1
ENSORLP00020029204	PIN_4	PF13638.6	9.8e-06	1	1
ENSORLP00020029215	PIN_4	PF13638.6	1.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020032097	-	7428	-	ENSORLP00020029215	1108 (aa)	-	-
ENSORLT00020019457	-	2934	-	ENSORLP00020029204	977 (aa)	-	-

Gene Model

Click here to download ENSORLG00020013127's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020013127's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020013127	smg5	99	65.984	ENSG00000198952	SMG5	99	64.327	Homo_sapiens
ENSORLG00020013127	smg5	100	86.335	ENSAPOG00000019690	smg5	100	85.727	Acanthochromis_polyacanthus
ENSORLG00020013127	smg5	98	64.407	ENSAMEG00000014458	SMG5	100	63.320	Ailuropoda_melanoleuca
ENSORLG00020013127	smg5	100	81.368	ENSACIG00000001353	smg5	99	80.884	Amphilophus_citrinellus
ENSORLG00020013127	smg5	100	87.289	ENSAOCG00000019483	smg5	100	86.400	Amphiprion_ocellaris
ENSORLG00020013127	smg5	100	86.833	ENSAPEG00000022949	smg5	100	86.400	Amphiprion_percula
ENSORLG00020013127	smg5	100	84.698	ENSATEG00000005348	smg5	100	84.046	Anabas_testudineus
ENSORLG00020013127	smg5	98	65.924	ENSAPLG00000010263	SMG5	100	64.085	Anas_platyrhynchos
ENSORLG00020013127	smg5	99	65.789	ENSANAG00000032899	SMG5	99	65.396	Aotus_nancymaae
ENSORLG00020013127	smg5	100	85.689	ENSACLG00000009311	smg5	100	85.053	Astatotilapia_calliptera
ENSORLG00020013127	smg5	100	75.714	ENSAMXG00000024616	smg5	100	75.961	Astyanax_mexicanus
ENSORLG00020013127	smg5	99	39.453	ENSBTAG00000021747	-	99	39.424	Bos_taurus
ENSORLG00020013127	smg5	99	66.049	ENSBTAG00000009435	SMG5	99	64.425	Bos_taurus
ENSORLG00020013127	smg5	99	65.920	ENSCJAG00000005684	SMG5	99	65.396	Callithrix_jacchus
ENSORLG00020013127	smg5	99	65.294	ENSCAFG00000016839	SMG5	99	64.027	Canis_familiaris
ENSORLG00020013127	smg5	99	65.294	ENSCAFG00020006061	SMG5	99	64.027	Canis_lupus_dingo
ENSORLG00020013127	smg5	98	39.645	ENSCHIG00000006323	-	99	37.791	Capra_hircus
ENSORLG00020013127	smg5	99	66.373	ENSCHIG00000007709	SMG5	99	64.327	Capra_hircus
ENSORLG00020013127	smg5	99	65.756	ENSTSYG00000004099	SMG5	99	64.070	Carlito_syrichta
ENSORLG00020013127	smg5	94	50.771	ENSCAPG00000003631	SMG5	100	49.020	Cavia_aperea
ENSORLG00020013127	smg5	99	65.661	ENSCPOG00000015696	SMG5	99	65.039	Cavia_porcellus
ENSORLG00020013127	smg5	99	65.433	ENSCCAG00000027409	SMG5	99	64.809	Cebus_capucinus
ENSORLG00020013127	smg5	99	65.920	ENSCATG00000030539	SMG5	99	64.522	Cercocebus_atys
ENSORLG00020013127	smg5	99	65.628	ENSCLAG00000003983	SMG5	99	65.039	Chinchilla_lanigera
ENSORLG00020013127	smg5	99	65.920	ENSCSAG00000002120	SMG5	99	64.327	Chlorocebus_sabaeus
ENSORLG00020013127	smg5	55	74.729	ENSCHOG00000008741	-	57	75.090	Choloepus_hoffmanni
ENSORLG00020013127	smg5	93	64.400	ENSCPBG00000025848	SMG5	100	63.600	Chrysemys_picta_bellii
ENSORLG00020013127	smg5	93	32.570	ENSCING00000008706	-	84	37.717	Ciona_intestinalis
ENSORLG00020013127	smg5	99	63.707	ENSCANG00000029208	SMG5	99	61.988	Colobus_angolensis_palliatus
ENSORLG00020013127	smg5	99	65.000	ENSCGRG00001006336	Smg5	99	63.840	Cricetulus_griseus_chok1gshd
ENSORLG00020013127	smg5	98	64.870	ENSCGRG00000005111	Smg5	100	63.654	Cricetulus_griseus_crigri
ENSORLG00020013127	smg5	100	81.406	ENSCSEG00000014220	smg5	100	80.783	Cynoglossus_semilaevis
ENSORLG00020013127	smg5	100	76.877	ENSCVAG00000000529	smg5	100	76.703	Cyprinodon_variegatus
ENSORLG00020013127	smg5	100	76.224	ENSDARG00000041481	smg5	100	76.643	Danio_rerio
ENSORLG00020013127	smg5	93	33.262	ENSDNOG00000039862	-	99	32.833	Dasypus_novemcinctus
ENSORLG00020013127	smg5	99	63.379	ENSDNOG00000000051	SMG5	99	61.868	Dasypus_novemcinctus
ENSORLG00020013127	smg5	99	65.984	ENSDORG00000010382	Smg5	99	64.786	Dipodomys_ordii
ENSORLG00020013127	smg5	76	84.466	ENSETEG00000010336	SMG5	84	84.466	Echinops_telfairi
ENSORLG00020013127	smg5	91	45.349	ENSEBUG00000003739	smg5	99	45.815	Eptatretus_burgeri
ENSORLG00020013127	smg5	99	65.820	ENSEASG00005019122	SMG5	99	64.327	Equus_asinus_asinus
ENSORLG00020013127	smg5	99	65.820	ENSECAG00000001389	SMG5	99	64.327	Equus_caballus
ENSORLG00020013127	smg5	75	77.183	ENSEEUG00000012690	SMG5	75	76.056	Erinaceus_europaeus
ENSORLG00020013127	smg5	100	80.622	ENSELUG00000012585	smg5	100	79.059	Esox_lucius
ENSORLG00020013127	smg5	99	65.064	ENSFCAG00000011783	SMG5	99	63.930	Felis_catus
ENSORLG00020013127	smg5	57	70.698	ENSFALG00000001166	-	95	66.610	Ficedula_albicollis
ENSORLG00020013127	smg5	97	65.737	ENSFDAG00000017388	SMG5	100	64.513	Fukomys_damarensis
ENSORLG00020013127	smg5	98	76.178	ENSFHEG00000013939	smg5	95	87.227	Fundulus_heteroclitus
ENSORLG00020013127	smg5	100	76.842	ENSGMOG00000007310	smg5	100	76.754	Gadus_morhua
ENSORLG00020013127	smg5	99	65.517	ENSGALG00000029918	-	99	63.688	Gallus_gallus
ENSORLG00020013127	smg5	92	88.179	ENSGAFG00000021691	smg5	99	88.179	Gambusia_affinis
ENSORLG00020013127	smg5	100	83.704	ENSGACG00000013142	smg5	100	83.289	Gasterosteus_aculeatus
ENSORLG00020013127	smg5	99	66.258	ENSGAGG00000016131	SMG5	99	64.373	Gopherus_agassizii
ENSORLG00020013127	smg5	99	65.823	ENSGGOG00000010932	SMG5	99	64.327	Gorilla_gorilla
ENSORLG00020013127	smg5	100	85.359	ENSHBUG00000008654	smg5	100	85.448	Haplochromis_burtoni
ENSORLG00020013127	smg5	99	65.103	ENSHGLG00000019152	SMG5	99	64.494	Heterocephalus_glaber_female
ENSORLG00020013127	smg5	90	65.761	ENSHGLG00100015948	SMG5	99	64.973	Heterocephalus_glaber_male
ENSORLG00020013127	smg5	99	65.691	ENSHCOG00000010229	smg5	91	82.282	Hippocampus_comes
ENSORLG00020013127	smg5	100	76.664	ENSIPUG00000006624	Smg5	100	75.688	Ictalurus_punctatus
ENSORLG00020013127	smg5	99	65.725	ENSSTOG00000001780	SMG5	99	64.809	Ictidomys_tridecemlineatus
ENSORLG00020013127	smg5	99	65.695	ENSJJAG00000022763	Smg5	99	64.786	Jaculus_jaculus
ENSORLG00020013127	smg5	100	86.578	ENSKMAG00000014586	smg5	100	86.133	Kryptolebias_marmoratus
ENSORLG00020013127	smg5	100	85.396	ENSLBEG00000002145	smg5	100	84.595	Labrus_bergylta
ENSORLG00020013127	smg5	99	59.431	ENSLACG00000010521	SMG5	99	58.365	Latimeria_chalumnae
ENSORLG00020013127	smg5	93	83.486	ENSLOCG00000008380	smg5	90	83.412	Lepisosteus_oculatus
ENSORLG00020013127	smg5	100	65.887	ENSLAFG00000006241	SMG5	100	64.334	Loxodonta_africana
ENSORLG00020013127	smg5	99	65.920	ENSMFAG00000045357	SMG5	99	64.327	Macaca_fascicularis
ENSORLG00020013127	smg5	99	66.145	ENSMMUG00000000090	SMG5	99	64.522	Macaca_mulatta
ENSORLG00020013127	smg5	99	65.823	ENSMNEG00000044425	SMG5	99	64.425	Macaca_nemestrina
ENSORLG00020013127	smg5	99	60.621	ENSMLEG00000041192	SMG5	99	59.223	Mandrillus_leucophaeus
ENSORLG00020013127	smg5	100	84.206	ENSMAMG00000010683	smg5	100	83.911	Mastacembelus_armatus
ENSORLG00020013127	smg5	65	74.313	ENSMZEG00005016543	smg5	100	74.540	Maylandia_zebra
ENSORLG00020013127	smg5	99	79.537	ENSMZEG00005015815	smg5	99	79.537	Maylandia_zebra
ENSORLG00020013127	smg5	99	65.162	ENSMAUG00000010381	Smg5	99	64.000	Mesocricetus_auratus
ENSORLG00020013127	smg5	99	65.625	ENSMICG00000002257	SMG5	99	64.516	Microcebus_murinus
ENSORLG00020013127	smg5	99	65.554	ENSMOCG00000016590	Smg5	99	64.000	Microtus_ochrogaster
ENSORLG00020013127	smg5	100	79.876	ENSMMOG00000017199	smg5	100	79.610	Mola_mola
ENSORLG00020013127	smg5	97	30.831	ENSMODG00000004511	-	85	35.567	Monodelphis_domestica
ENSORLG00020013127	smg5	79	33.763	ENSMODG00000004735	-	88	33.676	Monodelphis_domestica
ENSORLG00020013127	smg5	87	66.331	ENSMODG00000016901	SMG5	98	65.807	Monodelphis_domestica
ENSORLG00020013127	smg5	81	36.207	ENSMODG00000004532	-	86	35.714	Monodelphis_domestica
ENSORLG00020013127	smg5	72	34.015	ENSMODG00000010675	-	88	34.271	Monodelphis_domestica
ENSORLG00020013127	smg5	100	83.304	ENSMALG00000010375	smg5	100	82.012	Monopterus_albus
ENSORLG00020013127	smg5	99	65.328	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSORLG00020013127	smg5	99	65.558	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSORLG00020013127	smg5	99	65.527	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSORLG00020013127	smg5	99	65.460	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSORLG00020013127	smg5	93	64.442	ENSMPUG00000004546	SMG5	100	63.816	Mustela_putorius_furo
ENSORLG00020013127	smg5	99	65.107	ENSMLUG00000008518	SMG5	99	64.390	Myotis_lucifugus
ENSORLG00020013127	smg5	99	65.430	ENSNGAG00000020706	Smg5	99	64.516	Nannospalax_galili
ENSORLG00020013127	smg5	79	49.877	ENSNGAG00000012101	-	86	49.631	Nannospalax_galili
ENSORLG00020013127	smg5	96	82.046	ENSNBRG00000004332	smg5	97	81.894	Neolamprologus_brichardi
ENSORLG00020013127	smg5	99	65.725	ENSNLEG00000012439	SMG5	99	64.230	Nomascus_leucogenys
ENSORLG00020013127	smg5	99	64.488	ENSMEUG00000012834	SMG5	99	64.251	Notamacropus_eugenii
ENSORLG00020013127	smg5	99	65.595	ENSOPRG00000009152	SMG5	99	63.892	Ochotona_princeps
ENSORLG00020013127	smg5	99	65.370	ENSODEG00000012237	SMG5	99	65.171	Octodon_degus
ENSORLG00020013127	smg5	100	85.448	ENSONIG00000008632	smg5	100	84.991	Oreochromis_niloticus
ENSORLG00020013127	smg5	90	38.053	ENSOCUG00000023338	-	99	36.732	Oryctolagus_cuniculus
ENSORLG00020013127	smg5	98	65.308	ENSOCUG00000012886	SMG5	100	64.378	Oryctolagus_cuniculus
ENSORLG00020013127	smg5	100	98.828	ENSORLG00000016239	smg5	100	98.828	Oryzias_latipes
ENSORLG00020013127	smg5	100	99.097	ENSORLG00015019014	smg5	100	99.097	Oryzias_latipes_hsok
ENSORLG00020013127	smg5	84	93.878	ENSOMEG00000021330	smg5	92	94.092	Oryzias_melastigma
ENSORLG00020013127	smg5	99	65.524	ENSOGAG00000004966	SMG5	99	64.453	Otolemur_garnettii
ENSORLG00020013127	smg5	99	39.844	ENSOARG00000011963	-	85	50.602	Ovis_aries
ENSORLG00020013127	smg5	99	66.276	ENSOARG00000005778	SMG5	99	64.327	Ovis_aries
ENSORLG00020013127	smg5	99	65.887	ENSPPAG00000011996	SMG5	99	64.230	Pan_paniscus
ENSORLG00020013127	smg5	98	64.535	ENSPPRG00000011901	SMG5	100	63.682	Panthera_pardus
ENSORLG00020013127	smg5	94	62.815	ENSPTIG00000007892	SMG5	90	74.690	Panthera_tigris_altaica
ENSORLG00020013127	smg5	99	65.887	ENSPTRG00000049282	-	99	64.230	Pan_troglodytes
ENSORLG00020013127	smg5	99	65.887	ENSPTRG00000023925	SMG5	99	64.230	Pan_troglodytes
ENSORLG00020013127	smg5	99	65.920	ENSPANG00000011201	SMG5	99	64.522	Papio_anubis
ENSORLG00020013127	smg5	100	76.826	ENSPKIG00000009402	smg5	100	76.047	Paramormyrops_kingsleyae
ENSORLG00020013127	smg5	98	66.732	ENSPSIG00000015198	SMG5	100	65.582	Pelodiscus_sinensis
ENSORLG00020013127	smg5	100	71.364	ENSPMGG00000010465	smg5	100	70.063	Periophthalmus_magnuspinnatus
ENSORLG00020013127	smg5	99	65.751	ENSPEMG00000001819	Smg5	99	64.195	Peromyscus_maniculatus_bairdii
ENSORLG00020013127	smg5	98	48.549	ENSPMAG00000000410	smg5	99	48.774	Petromyzon_marinus
ENSORLG00020013127	smg5	99	66.012	ENSPCIG00000018938	SMG5	99	64.798	Phascolarctos_cinereus
ENSORLG00020013127	smg5	100	85.040	ENSPFOG00000010191	smg5	100	84.821	Poecilia_formosa
ENSORLG00020013127	smg5	100	85.179	ENSPLAG00000009332	smg5	100	85.089	Poecilia_latipinna
ENSORLG00020013127	smg5	100	85.040	ENSPMEG00000014105	smg5	100	84.821	Poecilia_mexicana
ENSORLG00020013127	smg5	100	85.179	ENSPREG00000017713	smg5	100	85.179	Poecilia_reticulata
ENSORLG00020013127	smg5	99	65.984	ENSPPYG00000000723	SMG5	99	64.327	Pongo_abelii
ENSORLG00020013127	smg5	76	79.444	ENSPCAG00000008412	SMG5	81	79.444	Procavia_capensis
ENSORLG00020013127	smg5	99	65.756	ENSPCOG00000004741	SMG5	99	64.648	Propithecus_coquereli
ENSORLG00020013127	smg5	99	59.552	ENSPVAG00000016748	SMG5	99	58.715	Pteropus_vampyrus
ENSORLG00020013127	smg5	100	84.881	ENSPNYG00000013397	smg5	100	84.881	Pundamilia_nyererei
ENSORLG00020013127	smg5	100	76.157	ENSPNAG00000028363	smg5	100	75.755	Pygocentrus_nattereri
ENSORLG00020013127	smg5	99	65.460	ENSRNOG00000019590	Smg5	99	64.000	Rattus_norvegicus
ENSORLG00020013127	smg5	99	66.018	ENSRBIG00000027428	SMG5	99	64.522	Rhinopithecus_bieti
ENSORLG00020013127	smg5	99	66.018	ENSRROG00000030035	SMG5	99	64.522	Rhinopithecus_roxellana
ENSORLG00020013127	smg5	99	65.628	ENSSBOG00000033339	SMG5	99	65.005	Saimiri_boliviensis_boliviensis
ENSORLG00020013127	smg5	98	31.617	ENSSHAG00000000561	-	87	36.320	Sarcophilus_harrisii
ENSORLG00020013127	smg5	99	31.062	ENSSHAG00000009572	-	98	30.660	Sarcophilus_harrisii
ENSORLG00020013127	smg5	98	65.010	ENSSHAG00000014163	SMG5	100	64.314	Sarcophilus_harrisii
ENSORLG00020013127	smg5	66	34.316	ENSSHAG00000000935	-	88	35.831	Sarcophilus_harrisii
ENSORLG00020013127	smg5	100	76.916	ENSSFOG00015024175	smg5	100	75.752	Scleropages_formosus
ENSORLG00020013127	smg5	100	84.609	ENSSMAG00000013059	smg5	100	84.725	Scophthalmus_maximus
ENSORLG00020013127	smg5	100	86.372	ENSSDUG00000007122	smg5	100	85.500	Seriola_dumerili
ENSORLG00020013127	smg5	100	86.247	ENSSLDG00000011418	smg5	100	86.259	Seriola_lalandi_dorsalis
ENSORLG00020013127	smg5	85	67.986	ENSSARG00000012484	SMG5	94	67.986	Sorex_araneus
ENSORLG00020013127	smg5	93	64.072	ENSSPUG00000002260	SMG5	100	62.413	Sphenodon_punctatus
ENSORLG00020013127	smg5	100	86.170	ENSSPAG00000014266	smg5	100	85.562	Stegastes_partitus
ENSORLG00020013127	smg5	99	52.036	ENSSSCG00000039308	-	99	50.642	Sus_scrofa
ENSORLG00020013127	smg5	99	65.918	ENSSSCG00000006490	-	100	63.485	Sus_scrofa
ENSORLG00020013127	smg5	99	67.679	ENSTGUG00000003748	-	99	65.761	Taeniopygia_guttata
ENSORLG00020013127	smg5	100	78.388	ENSTRUG00000012580	smg5	100	78.737	Takifugu_rubripes
ENSORLG00020013127	smg5	100	79.170	ENSTNIG00000010303	smg5	100	79.255	Tetraodon_nigroviridis
ENSORLG00020013127	smg5	59	83.251	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSORLG00020013127	smg5	99	62.183	ENSTTRG00000001401	SMG5	99	60.370	Tursiops_truncatus
ENSORLG00020013127	smg5	99	64.637	ENSUAMG00000013721	SMG5	99	63.699	Ursus_americanus
ENSORLG00020013127	smg5	99	60.831	ENSUMAG00000018041	SMG5	95	72.517	Ursus_maritimus
ENSORLG00020013127	smg5	92	71.287	ENSVPAG00000009446	SMG5	99	56.318	Vicugna_pacos
ENSORLG00020013127	smg5	99	65.490	ENSVVUG00000005887	SMG5	99	64.125	Vulpes_vulpes
ENSORLG00020013127	smg5	79	54.360	ENSXETG00000033791	SMG5	95	57.368	Xenopus_tropicalis
ENSORLG00020013127	smg5	81	90.110	ENSXCOG00000004379	smg5	99	90.110	Xiphophorus_couchianus
ENSORLG00020013127	smg5	100	84.821	ENSXMAG00000013499	smg5	100	84.657	Xiphophorus_maculatus