EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020013167 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 9145 bases
Position: chr9:29342308-29351452
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020012241	zf-C2H2	PF00096.26	4.2e-12	1	2
ENSORLP00020012241	zf-C2H2	PF00096.26	4.2e-12	2	2
ENSORLP00020012241	zf-met	PF12874.7	9.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020019337	-	3727	-	ENSORLP00020012241	390 (aa)	-	-

Gene Model

Click here to download ENSORLG00020013167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020013167's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020013167	-	100	77.665	ENSORLG00020019565	prdm12b	99	77.919
ENSORLG00020013167	-	50	46.667	ENSORLG00020017164	-	99	46.667
ENSORLG00020013167	-	68	42.105	ENSORLG00020018051	prdm5	92	42.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020013167	-	87	79.825	ENSG00000130711	PRDM12	99	71.355	Homo_sapiens
ENSORLG00020013167	-	100	79.597	ENSAPOG00000016051	prdm12b	100	79.597	Acanthochromis_polyacanthus
ENSORLG00020013167	-	100	71.611	ENSAPOG00000018234	-	100	71.611	Acanthochromis_polyacanthus
ENSORLG00020013167	-	87	78.886	ENSAMEG00000016234	PRDM12	99	78.592	Ailuropoda_melanoleuca
ENSORLG00020013167	-	100	86.750	ENSACIG00000005193	-	100	87.000	Amphilophus_citrinellus
ENSORLG00020013167	-	100	78.680	ENSACIG00000019578	prdm12b	100	78.680	Amphilophus_citrinellus
ENSORLG00020013167	-	100	79.644	ENSAOCG00000015040	prdm12b	100	79.389	Amphiprion_ocellaris
ENSORLG00020013167	-	100	83.544	ENSAPEG00000022849	-	99	83.586	Amphiprion_percula
ENSORLG00020013167	-	100	79.795	ENSAPEG00000015092	prdm12b	100	79.795	Amphiprion_percula
ENSORLG00020013167	-	100	87.879	ENSATEG00000014595	-	100	87.374	Anabas_testudineus
ENSORLG00020013167	-	87	79.825	ENSANAG00000020616	PRDM12	95	79.240	Aotus_nancymaae
ENSORLG00020013167	-	100	87.970	ENSACLG00000007631	-	100	89.724	Astatotilapia_calliptera
ENSORLG00020013167	-	100	75.703	ENSACLG00000011876	prdm12b	100	74.936	Astatotilapia_calliptera
ENSORLG00020013167	-	100	79.284	ENSAMXG00000033665	prdm12b	100	78.517	Astyanax_mexicanus
ENSORLG00020013167	-	100	75.962	ENSAMXG00000008540	PRDM12	100	75.481	Astyanax_mexicanus
ENSORLG00020013167	-	87	80.117	ENSBTAG00000023797	PRDM12	90	79.532	Bos_taurus
ENSORLG00020013167	-	87	79.825	ENSCJAG00000020540	PRDM12	90	79.240	Callithrix_jacchus
ENSORLG00020013167	-	77	81.667	ENSCAFG00000023076	PRDM12	88	81.333	Canis_familiaris
ENSORLG00020013167	-	87	80.117	ENSCAFG00020024046	PRDM12	89	79.532	Canis_lupus_dingo
ENSORLG00020013167	-	87	80.117	ENSCHIG00000025005	PRDM12	99	71.867	Capra_hircus
ENSORLG00020013167	-	84	78.485	ENSCPOG00000005901	PRDM12	95	78.182	Cavia_porcellus
ENSORLG00020013167	-	87	79.825	ENSCCAG00000037485	PRDM12	89	79.240	Cebus_capucinus
ENSORLG00020013167	-	87	79.825	ENSCATG00000020327	PRDM12	89	79.240	Cercocebus_atys
ENSORLG00020013167	-	89	77.937	ENSCLAG00000005499	PRDM12	91	77.650	Chinchilla_lanigera
ENSORLG00020013167	-	87	79.825	ENSCSAG00000014756	PRDM12	89	79.240	Chlorocebus_sabaeus
ENSORLG00020013167	-	100	75.192	ENSCPBG00000022628	PRDM12	99	73.402	Chrysemys_picta_bellii
ENSORLG00020013167	-	87	80.117	ENSCGRG00001015005	Prdm12	99	72.123	Cricetulus_griseus_chok1gshd
ENSORLG00020013167	-	100	85.894	ENSCVAG00000000944	-	100	87.154	Cyprinodon_variegatus
ENSORLG00020013167	-	100	76.982	ENSCVAG00000017166	prdm12b	100	76.726	Cyprinodon_variegatus
ENSORLG00020013167	-	100	80.307	ENSDARG00000007430	prdm12b	100	77.749	Danio_rerio
ENSORLG00020013167	-	87	79.592	ENSDNOG00000042302	PRDM12	90	79.009	Dasypus_novemcinctus
ENSORLG00020013167	-	87	63.085	ENSEBUG00000016780	prdm12b	73	67.257	Eptatretus_burgeri
ENSORLG00020013167	-	89	78.797	ENSEASG00005008472	PRDM12	99	73.146	Equus_asinus_asinus
ENSORLG00020013167	-	89	78.797	ENSECAG00000005933	PRDM12	99	73.146	Equus_caballus
ENSORLG00020013167	-	100	73.671	ENSELUG00000013674	PRDM12	100	74.619	Esox_lucius
ENSORLG00020013167	-	100	80.256	ENSELUG00000009905	prdm12b	100	78.205	Esox_lucius
ENSORLG00020013167	-	87	80.117	ENSFCAG00000043086	PRDM12	89	79.532	Felis_catus
ENSORLG00020013167	-	100	75.703	ENSFALG00000001445	PRDM12	89	74.169	Ficedula_albicollis
ENSORLG00020013167	-	100	84.577	ENSFHEG00000007746	-	100	83.582	Fundulus_heteroclitus
ENSORLG00020013167	-	100	76.590	ENSFHEG00000003944	prdm12b	100	76.590	Fundulus_heteroclitus
ENSORLG00020013167	-	100	75.959	ENSGMOG00000011797	prdm12b	100	76.215	Gadus_morhua
ENSORLG00020013167	-	100	75.703	ENSGALG00000003895	PRDM12	99	73.913	Gallus_gallus
ENSORLG00020013167	-	100	76.982	ENSGAFG00000010827	prdm12b	99	77.238	Gambusia_affinis
ENSORLG00020013167	-	100	77.099	ENSGACG00000016713	prdm12b	99	76.081	Gasterosteus_aculeatus
ENSORLG00020013167	-	100	75.192	ENSGAGG00000014083	PRDM12	99	73.402	Gopherus_agassizii
ENSORLG00020013167	-	87	79.532	ENSGGOG00000010568	PRDM12	99	71.611	Gorilla_gorilla
ENSORLG00020013167	-	100	79.284	ENSHBUG00000022878	prdm12b	100	78.517	Haplochromis_burtoni
ENSORLG00020013167	-	100	87.970	ENSHBUG00000022537	-	93	89.474	Haplochromis_burtoni
ENSORLG00020013167	-	89	77.937	ENSHGLG00000013939	PRDM12	99	71.867	Heterocephalus_glaber_female
ENSORLG00020013167	-	100	73.485	ENSHCOG00000021167	-	100	71.930	Hippocampus_comes
ENSORLG00020013167	-	87	82.029	ENSHCOG00000003663	prdm12b	100	74.372	Hippocampus_comes
ENSORLG00020013167	-	100	80.051	ENSIPUG00000017053	prdm12b	100	79.284	Ictalurus_punctatus
ENSORLG00020013167	-	100	72.379	ENSIPUG00000019544	PRDM12	100	71.611	Ictalurus_punctatus
ENSORLG00020013167	-	87	80.117	ENSSTOG00000005986	PRDM12	85	79.825	Ictidomys_tridecemlineatus
ENSORLG00020013167	-	87	79.825	ENSJJAG00000005424	Prdm12	98	79.532	Jaculus_jaculus
ENSORLG00020013167	-	95	82.842	ENSKMAG00000021205	-	93	82.574	Kryptolebias_marmoratus
ENSORLG00020013167	-	100	73.902	ENSKMAG00000016921	prdm12b	100	73.839	Kryptolebias_marmoratus
ENSORLG00020013167	-	100	88.424	ENSLBEG00000007776	-	100	87.192	Labrus_bergylta
ENSORLG00020013167	-	100	78.880	ENSLBEG00000017769	prdm12b	100	78.880	Labrus_bergylta
ENSORLG00020013167	-	100	75.959	ENSLACG00000017560	PRDM12	99	75.192	Latimeria_chalumnae
ENSORLG00020013167	-	100	79.597	ENSLOCG00000005429	prdm12b	100	77.834	Lepisosteus_oculatus
ENSORLG00020013167	-	87	78.386	ENSLAFG00000006979	PRDM12	88	78.098	Loxodonta_africana
ENSORLG00020013167	-	87	79.825	ENSMFAG00000040322	PRDM12	88	79.240	Macaca_fascicularis
ENSORLG00020013167	-	87	79.825	ENSMNEG00000037234	PRDM12	89	79.240	Macaca_nemestrina
ENSORLG00020013167	-	100	79.389	ENSMAMG00000013212	prdm12b	100	79.135	Mastacembelus_armatus
ENSORLG00020013167	-	100	82.587	ENSMAMG00000018988	-	100	84.577	Mastacembelus_armatus
ENSORLG00020013167	-	100	87.531	ENSMZEG00005000415	PRDM12	100	89.277	Maylandia_zebra
ENSORLG00020013167	-	98	75.325	ENSMGAG00000005438	PRDM12	98	73.506	Meleagris_gallopavo
ENSORLG00020013167	-	100	72.911	ENSMAUG00000013040	Prdm12	99	71.867	Mesocricetus_auratus
ENSORLG00020013167	-	87	80.117	ENSMICG00000015480	PRDM12	90	79.532	Microcebus_murinus
ENSORLG00020013167	-	97	74.670	ENSMOCG00000021026	Prdm12	89	79.825	Microtus_ochrogaster
ENSORLG00020013167	-	100	74.745	ENSMODG00000012108	PRDM12	99	73.214	Monodelphis_domestica
ENSORLG00020013167	-	84	77.273	ENSMALG00000021901	prdm12b	96	76.061	Monopterus_albus
ENSORLG00020013167	-	87	80.117	MGP_CAROLIEiJ_G0023414	Prdm12	99	72.634	Mus_caroli
ENSORLG00020013167	-	87	80.117	ENSMUSG00000079466	Prdm12	99	72.634	Mus_musculus
ENSORLG00020013167	-	87	80.117	MGP_PahariEiJ_G0024871	Prdm12	99	72.634	Mus_pahari
ENSORLG00020013167	-	87	80.117	MGP_SPRETEiJ_G0024331	Prdm12	99	72.634	Mus_spretus
ENSORLG00020013167	-	87	80.117	ENSNGAG00000018480	Prdm12	99	71.867	Nannospalax_galili
ENSORLG00020013167	-	100	78.680	ENSNBRG00000006727	prdm12b	100	78.426	Neolamprologus_brichardi
ENSORLG00020013167	-	100	79.545	ENSNBRG00000024312	-	100	80.051	Neolamprologus_brichardi
ENSORLG00020013167	-	100	67.092	ENSMEUG00000003828	PRDM12	99	65.561	Notamacropus_eugenii
ENSORLG00020013167	-	87	79.825	ENSOPRG00000008680	PRDM12	98	79.240	Ochotona_princeps
ENSORLG00020013167	-	87	79.532	ENSODEG00000016282	PRDM12	61	79.532	Octodon_degus
ENSORLG00020013167	-	64	74.400	ENSOANG00000001043	PRDM12	100	72.400	Ornithorhynchus_anatinus
ENSORLG00020013167	-	81	80.442	ENSOCUG00000008241	PRDM12	96	80.126	Oryctolagus_cuniculus
ENSORLG00020013167	-	100	77.665	ENSORLG00000007114	prdm12b	99	76.904	Oryzias_latipes
ENSORLG00020013167	-	100	99.487	ENSORLG00000017558	-	100	99.487	Oryzias_latipes
ENSORLG00020013167	-	100	76.845	ENSORLG00015007621	prdm12b	99	76.845	Oryzias_latipes_hsok
ENSORLG00020013167	-	100	99.231	ENSORLG00015003435	-	100	99.231	Oryzias_latipes_hsok
ENSORLG00020013167	-	100	76.692	ENSOMEG00000004134	prdm12b	99	76.574	Oryzias_melastigma
ENSORLG00020013167	-	100	96.709	ENSOMEG00000007762	-	100	96.709	Oryzias_melastigma
ENSORLG00020013167	-	87	80.117	ENSOGAG00000007557	PRDM12	97	79.532	Otolemur_garnettii
ENSORLG00020013167	-	78	76.974	ENSPPAG00000031506	-	99	75.161	Pan_paniscus
ENSORLG00020013167	-	100	66.919	ENSPPRG00000023024	PRDM12	83	72.595	Panthera_pardus
ENSORLG00020013167	-	87	79.825	ENSPTRG00000021475	PRDM12	99	71.867	Pan_troglodytes
ENSORLG00020013167	-	87	79.825	ENSPTRG00000043324	-	99	71.867	Pan_troglodytes
ENSORLG00020013167	-	87	79.825	ENSPANG00000025967	PRDM12	89	79.240	Papio_anubis
ENSORLG00020013167	-	100	82.097	ENSPKIG00000007228	prdm12b	100	80.563	Paramormyrops_kingsleyae
ENSORLG00020013167	-	87	77.391	ENSPKIG00000004305	PRDM12	94	76.608	Paramormyrops_kingsleyae
ENSORLG00020013167	-	100	75.448	ENSPSIG00000006739	PRDM12	99	73.402	Pelodiscus_sinensis
ENSORLG00020013167	-	100	75.959	ENSPMGG00000008867	prdm12b	99	76.276	Periophthalmus_magnuspinnatus
ENSORLG00020013167	-	100	79.557	ENSPMGG00000002356	-	100	78.803	Periophthalmus_magnuspinnatus
ENSORLG00020013167	-	89	78.857	ENSPEMG00000009969	Prdm12	91	78.223	Peromyscus_maniculatus_bairdii
ENSORLG00020013167	-	100	74.745	ENSPCIG00000024119	PRDM12	99	73.214	Phascolarctos_cinereus
ENSORLG00020013167	-	100	76.590	ENSPFOG00000019841	prdm12b	100	76.336	Poecilia_formosa
ENSORLG00020013167	-	100	76.982	ENSPLAG00000016626	prdm12b	99	76.982	Poecilia_latipinna
ENSORLG00020013167	-	95	78.919	ENSPMEG00000016698	prdm12b	97	79.189	Poecilia_mexicana
ENSORLG00020013167	-	96	77.836	ENSPREG00000003211	-	94	77.984	Poecilia_reticulata
ENSORLG00020013167	-	100	77.238	ENSPREG00000015073	prdm12b	99	77.238	Poecilia_reticulata
ENSORLG00020013167	-	87	79.825	ENSPPYG00000019694	PRDM12	92	79.240	Pongo_abelii
ENSORLG00020013167	-	87	80.117	ENSPCOG00000022255	PRDM12	99	72.379	Propithecus_coquereli
ENSORLG00020013167	-	87	80.117	ENSPVAG00000001511	PRDM12	99	71.867	Pteropus_vampyrus
ENSORLG00020013167	-	100	79.135	ENSPNYG00000009607	prdm12b	100	78.372	Pundamilia_nyererei
ENSORLG00020013167	-	100	87.781	ENSPNYG00000013589	-	100	89.277	Pundamilia_nyererei
ENSORLG00020013167	-	100	79.540	ENSPNAG00000024532	prdm12b	100	78.517	Pygocentrus_nattereri
ENSORLG00020013167	-	100	72.564	ENSPNAG00000013396	PRDM12	100	72.890	Pygocentrus_nattereri
ENSORLG00020013167	-	87	80.117	ENSRNOG00000009218	Prdm12	99	72.634	Rattus_norvegicus
ENSORLG00020013167	-	85	79.341	ENSRBIG00000042712	PRDM12	88	78.107	Rhinopithecus_bieti
ENSORLG00020013167	-	86	79.586	ENSRROG00000043554	PRDM12	99	78.994	Rhinopithecus_roxellana
ENSORLG00020013167	-	100	74.300	ENSSHAG00000015972	PRDM12	99	72.774	Sarcophilus_harrisii
ENSORLG00020013167	-	100	75.439	ENSSMAG00000003754	prdm12b	100	75.062	Scophthalmus_maximus
ENSORLG00020013167	-	100	78.304	ENSSDUG00000023498	prdm12b	100	77.307	Seriola_dumerili
ENSORLG00020013167	-	100	88.101	ENSSDUG00000019071	-	100	87.089	Seriola_dumerili
ENSORLG00020013167	-	100	80.867	ENSSLDG00000013562	-	100	81.378	Seriola_lalandi_dorsalis
ENSORLG00020013167	-	100	78.894	ENSSLDG00000009557	prdm12b	100	78.141	Seriola_lalandi_dorsalis
ENSORLG00020013167	-	100	75.703	ENSSPUG00000013424	PRDM12	99	74.680	Sphenodon_punctatus
ENSORLG00020013167	-	100	78.173	ENSSPAG00000018824	prdm12b	100	78.934	Stegastes_partitus
ENSORLG00020013167	-	100	77.778	ENSSPAG00000022420	-	100	78.788	Stegastes_partitus
ENSORLG00020013167	-	87	80.117	ENSSSCG00000005703	PRDM12	89	79.532	Sus_scrofa
ENSORLG00020013167	-	100	80.916	ENSTRUG00000013239	-	100	80.662	Takifugu_rubripes
ENSORLG00020013167	-	100	76.650	ENSTRUG00000018659	prdm12b	100	76.650	Takifugu_rubripes
ENSORLG00020013167	-	100	76.142	ENSTNIG00000005859	-	99	75.635	Tetraodon_nigroviridis
ENSORLG00020013167	-	100	75.318	ENSTNIG00000009020	prdm12b	99	75.064	Tetraodon_nigroviridis
ENSORLG00020013167	-	87	80.117	ENSUAMG00000009653	PRDM12	90	79.532	Ursus_americanus
ENSORLG00020013167	-	87	80.117	ENSVVUG00000027662	PRDM12	77	79.825	Vulpes_vulpes
ENSORLG00020013167	-	100	77.494	ENSXCOG00000002836	prdm12b	99	76.982	Xiphophorus_couchianus
ENSORLG00020013167	-	100	77.494	ENSXMAG00000005537	prdm12b	100	76.982	Xiphophorus_maculatus
ENSORLG00020013167	-	100	87.531	ENSXMAG00000028012	-	100	87.781	Xiphophorus_maculatus