EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00020013331 (Gene tree)
Gene ID
-
Gene Symbol
cpsf3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Oryzias_latipes_hni
Status
putative
Strand
Minus strand
Length
13538 bases
Position
chr24:20836010-20849547
Accession
ZDB-GENE-030131-3275
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00020012369CPSF73-100_CPF11718.81.1e-5011
ENSORLP00020029343CPSF73-100_CPF11718.83.3e-4612
ENSORLP00020029343CPSF73-100_CPF11718.83.3e-4622
ENSORLP00020029343Beta-CaspPF10996.87.1e-3411
ENSORLP00020012369Beta-CaspPF10996.81.2e-3311
ENSORLP00020012369Lactamase_BPF00753.273.3e-1811
ENSORLP00020029343Lactamase_BPF00753.278.1e-0811
ENSORLP00020029343RMMBLPF07521.121.6e-2111
ENSORLP00020012369RMMBLPF07521.121.9e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00020019479-1851-ENSORLP00020029343616 (aa)--
ENSORLT00020019526-6225-ENSORLP00020012369686 (aa)--
Gene Model
Click here to download ENSORLG00020013331's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020013331's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00020013331cpsf36539.207ENSORLG00020008544ints117439.207
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00020013331cpsf39983.554ENSG00000119203CPSF310097.059Homo_sapiens
ENSORLG00020013331cpsf310093.003ENSAPOG00000022087cpsf310093.003Acanthochromis_polyacanthus
ENSORLG00020013331cpsf37496.055ENSAPOG00000012241CPSF39196.055Acanthochromis_polyacanthus
ENSORLG00020013331cpsf39983.554ENSAMEG00000008493CPSF39983.554Ailuropoda_melanoleuca
ENSORLG00020013331cpsf39983.780ENSACIG00000023663CPSF39983.780Amphilophus_citrinellus
ENSORLG00020013331cpsf310088.924ENSACIG00000009846cpsf310088.924Amphilophus_citrinellus
ENSORLG00020013331cpsf310093.149ENSAOCG00000022056cpsf310093.149Amphiprion_ocellaris
ENSORLG00020013331cpsf39986.337ENSAOCG00000010077CPSF39986.337Amphiprion_ocellaris
ENSORLG00020013331cpsf310093.003ENSAPEG00000019526cpsf310093.003Amphiprion_percula
ENSORLG00020013331cpsf39986.337ENSAPEG00000021167CPSF39986.337Amphiprion_percula
ENSORLG00020013331cpsf39991.813ENSATEG00000003959cpsf39991.813Anabas_testudineus
ENSORLG00020013331cpsf39982.267ENSATEG00000014525CPSF39982.267Anabas_testudineus
ENSORLG00020013331cpsf39783.284ENSAPLG00000006941CPSF39883.284Anas_platyrhynchos
ENSORLG00020013331cpsf39979.524ENSACAG00000001759CPSF39981.861Anolis_carolinensis
ENSORLG00020013331cpsf39978.708ENSANAG00000031254CPSF39979.279Aotus_nancymaae
ENSORLG00020013331cpsf39983.937ENSACLG00000018846CPSF39984.738Astatotilapia_calliptera
ENSORLG00020013331cpsf310089.936ENSACLG00000014484cpsf39992.598Astatotilapia_calliptera
ENSORLG00020013331cpsf39985.610ENSAMXG00000004786cpsf39985.610Astyanax_mexicanus
ENSORLG00020013331cpsf39983.554ENSBTAG00000019735CPSF39983.554Bos_taurus
ENSORLG00020013331cpsf39056.940WBGene00013460cpsf-38956.940Caenorhabditis_elegans
ENSORLG00020013331cpsf39983.407ENSCJAG00000006276CPSF39983.407Callithrix_jacchus
ENSORLG00020013331cpsf39982.994ENSCAFG00000003375CPSF39682.994Canis_familiaris
ENSORLG00020013331cpsf39086.570ENSCAFG00020026799CPSF39986.570Canis_lupus_dingo
ENSORLG00020013331cpsf39983.554ENSCHIG00000013973CPSF39983.554Capra_hircus
ENSORLG00020013331cpsf39983.554ENSTSYG00000002967CPSF39983.554Carlito_syrichta
ENSORLG00020013331cpsf39683.910ENSCAPG00000013851CPSF39983.910Cavia_aperea
ENSORLG00020013331cpsf39983.847ENSCPOG00000011299CPSF39983.847Cavia_porcellus
ENSORLG00020013331cpsf39983.407ENSCCAG00000036730CPSF39983.483Cebus_capucinus
ENSORLG00020013331cpsf39982.232ENSCATG00000014770CPSF39989.483Cercocebus_atys
ENSORLG00020013331cpsf39983.847ENSCLAG00000002727CPSF39983.847Chinchilla_lanigera
ENSORLG00020013331cpsf39975.624ENSCSAG00000007125CPSF39975.624Chlorocebus_sabaeus
ENSORLG00020013331cpsf385100.000ENSCHOG00000000180CPSF38559.507Choloepus_hoffmanni
ENSORLG00020013331cpsf39983.309ENSCPBG00000014074CPSF39983.309Chrysemys_picta_bellii
ENSORLG00020013331cpsf39867.548ENSCING00000007214-9867.548Ciona_intestinalis
ENSORLG00020013331cpsf39974.853ENSCANG00000034435CPSF39974.853Colobus_angolensis_palliatus
ENSORLG00020013331cpsf39983.260ENSCGRG00001013134Cpsf39983.260Cricetulus_griseus_chok1gshd
ENSORLG00020013331cpsf39983.260ENSCGRG00000018319Cpsf39983.260Cricetulus_griseus_crigri
ENSORLG00020013331cpsf39985.341ENSCSEG00000002021CPSF39985.341Cynoglossus_semilaevis
ENSORLG00020013331cpsf39987.064ENSCVAG00000015067CPSF39987.064Cyprinodon_variegatus
ENSORLG00020013331cpsf310084.928ENSDARG00000027649cpsf310084.928Danio_rerio
ENSORLG00020013331cpsf39982.405ENSDNOG00000008940CPSF39582.405Dasypus_novemcinctus
ENSORLG00020013331cpsf39585.231ENSDORG00000014263Cpsf39985.231Dipodomys_ordii
ENSORLG00020013331cpsf39966.373FBgn0261065Cpsf739966.373Drosophila_melanogaster
ENSORLG00020013331cpsf39572.923ENSETEG00000003893CPSF39972.923Echinops_telfairi
ENSORLG00020013331cpsf39974.294ENSEBUG00000009018cpsf39974.294Eptatretus_burgeri
ENSORLG00020013331cpsf39983.554ENSEASG00005003970CPSF39983.554Equus_asinus_asinus
ENSORLG00020013331cpsf39983.554ENSECAG00000019911CPSF39689.057Equus_caballus
ENSORLG00020013331cpsf39969.163ENSEEUG00000015422CPSF39969.163Erinaceus_europaeus
ENSORLG00020013331cpsf39988.099ENSELUG00000013775cpsf39988.099Esox_lucius
ENSORLG00020013331cpsf39983.554ENSFCAG00000007852CPSF39983.554Felis_catus
ENSORLG00020013331cpsf39980.032ENSFALG00000006572CPSF310082.844Ficedula_albicollis
ENSORLG00020013331cpsf39983.407ENSFDAG00000006317CPSF39983.407Fukomys_damarensis
ENSORLG00020013331cpsf310093.003ENSFHEG00000014774cpsf310093.003Fundulus_heteroclitus
ENSORLG00020013331cpsf36363.415ENSFHEG00000012186CPSF310065.610Fundulus_heteroclitus
ENSORLG00020013331cpsf310088.244ENSGMOG00000003157cpsf310088.244Gadus_morhua
ENSORLG00020013331cpsf39983.164ENSGALG00000016424CPSF39983.164Gallus_gallus
ENSORLG00020013331cpsf310087.246ENSGAFG00000008016CPSF310087.246Gambusia_affinis
ENSORLG00020013331cpsf310089.666ENSGAFG00000019449cpsf310089.666Gambusia_affinis
ENSORLG00020013331cpsf37277.088ENSGAGG00000025583CPSF39378.373Gopherus_agassizii
ENSORLG00020013331cpsf39981.466ENSGGOG00000001757CPSF39195.931Gorilla_gorilla
ENSORLG00020013331cpsf36378.109ENSHBUG00000014332CPSF310078.109Haplochromis_burtoni
ENSORLG00020013331cpsf310092.274ENSHBUG00000001188cpsf310092.274Haplochromis_burtoni
ENSORLG00020013331cpsf39983.407ENSHGLG00000000666CPSF39983.407Heterocephalus_glaber_female
ENSORLG00020013331cpsf39983.407ENSHGLG00100007765CPSF39983.407Heterocephalus_glaber_male
ENSORLG00020013331cpsf39985.174ENSHCOG00000015957CPSF39985.174Hippocampus_comes
ENSORLG00020013331cpsf39991.667ENSHCOG00000007251cpsf39991.667Hippocampus_comes
ENSORLG00020013331cpsf39985.756ENSIPUG00000023488cpsf39985.756Ictalurus_punctatus
ENSORLG00020013331cpsf39983.260ENSSTOG00000004476CPSF39983.260Ictidomys_tridecemlineatus
ENSORLG00020013331cpsf39982.799ENSJJAG00000023415Cpsf39982.799Jaculus_jaculus
ENSORLG00020013331cpsf39986.192ENSKMAG00000007317CPSF39986.192Kryptolebias_marmoratus
ENSORLG00020013331cpsf310092.274ENSKMAG00000002806cpsf310092.274Kryptolebias_marmoratus
ENSORLG00020013331cpsf39687.386ENSLBEG00000013492CPSF39987.386Labrus_bergylta
ENSORLG00020013331cpsf39983.415ENSLBEG00000020569cpsf39683.236Labrus_bergylta
ENSORLG00020013331cpsf35884.054ENSLBEG00000015018-9984.800Labrus_bergylta
ENSORLG00020013331cpsf39978.406ENSLACG00000008308CPSF39978.406Latimeria_chalumnae
ENSORLG00020013331cpsf310086.003ENSLOCG00000016823cpsf310086.003Lepisosteus_oculatus
ENSORLG00020013331cpsf39882.743ENSLAFG00000009467CPSF39982.743Loxodonta_africana
ENSORLG00020013331cpsf39983.407ENSMFAG00000001339CPSF39593.154Macaca_fascicularis
ENSORLG00020013331cpsf39980.127ENSMMUG00000018038CPSF39293.154Macaca_mulatta
ENSORLG00020013331cpsf39095.238ENSMNEG00000039447CPSF39995.238Macaca_nemestrina
ENSORLG00020013331cpsf39983.554ENSMLEG00000026825CPSF39395.726Mandrillus_leucophaeus
ENSORLG00020013331cpsf39984.603ENSMAMG00000008835CPSF39984.603Mastacembelus_armatus
ENSORLG00020013331cpsf310090.379ENSMAMG00000003076cpsf310090.379Mastacembelus_armatus
ENSORLG00020013331cpsf39986.628ENSMZEG00005006258CPSF39986.628Maylandia_zebra
ENSORLG00020013331cpsf310092.274ENSMZEG00005014358cpsf310092.274Maylandia_zebra
ENSORLG00020013331cpsf39783.508ENSMGAG00000013995CPSF310083.508Meleagris_gallopavo
ENSORLG00020013331cpsf35771.390ENSMAUG00000000166Cpsf39972.727Mesocricetus_auratus
ENSORLG00020013331cpsf39979.063ENSMICG00000002363CPSF39979.063Microcebus_murinus
ENSORLG00020013331cpsf39980.764ENSMOCG00000020067Cpsf39980.764Microtus_ochrogaster
ENSORLG00020013331cpsf39984.967ENSMMOG00000018212CPSF39884.867Mola_mola
ENSORLG00020013331cpsf37878.014ENSMMOG00000011923CPSF38578.014Mola_mola
ENSORLG00020013331cpsf39982.122ENSMODG00000014703CPSF39982.122Monodelphis_domestica
ENSORLG00020013331cpsf310092.128ENSMALG00000016416cpsf310092.128Monopterus_albus
ENSORLG00020013331cpsf39682.566ENSMALG00000011474CPSF39982.992Monopterus_albus
ENSORLG00020013331cpsf39983.554MGP_CAROLIEiJ_G0017640Cpsf39983.554Mus_caroli
ENSORLG00020013331cpsf39983.554ENSMUSG00000054309Cpsf39696.186Mus_musculus
ENSORLG00020013331cpsf39983.407MGP_PahariEiJ_G0029397Cpsf39983.407Mus_pahari
ENSORLG00020013331cpsf39983.554MGP_SPRETEiJ_G0018481Cpsf39983.554Mus_spretus
ENSORLG00020013331cpsf39983.578ENSMPUG00000013213CPSF39983.578Mustela_putorius_furo
ENSORLG00020013331cpsf39983.724ENSMLUG00000010636CPSF39983.724Myotis_lucifugus
ENSORLG00020013331cpsf39983.260ENSNGAG00000019836Cpsf39983.260Nannospalax_galili
ENSORLG00020013331cpsf39983.937ENSNBRG00000010525CPSF39984.738Neolamprologus_brichardi
ENSORLG00020013331cpsf310092.128ENSNBRG00000004770cpsf310092.128Neolamprologus_brichardi
ENSORLG00020013331cpsf39983.407ENSNLEG00000013359CPSF39195.931Nomascus_leucogenys
ENSORLG00020013331cpsf39953.744ENSMEUG00000013117-9953.744Notamacropus_eugenii
ENSORLG00020013331cpsf39875.294ENSOPRG00000008902CPSF39975.294Ochotona_princeps
ENSORLG00020013331cpsf39983.994ENSODEG00000003129CPSF39983.994Octodon_degus
ENSORLG00020013331cpsf310091.837ENSONIG00000018812cpsf310091.837Oreochromis_niloticus
ENSORLG00020013331cpsf38879.715ENSOANG00000008577CPSF39980.783Ornithorhynchus_anatinus
ENSORLG00020013331cpsf39983.554ENSOCUG00000003728CPSF39983.554Oryctolagus_cuniculus
ENSORLG00020013331cpsf310099.854ENSORLG00000018854cpsf310099.854Oryzias_latipes
ENSORLG00020013331cpsf310099.854ENSORLG00015011017cpsf310099.854Oryzias_latipes_hsok
ENSORLG00020013331cpsf310098.251ENSOMEG00000010647cpsf39698.251Oryzias_melastigma
ENSORLG00020013331cpsf39974.009ENSOGAG00000001680CPSF39974.009Otolemur_garnettii
ENSORLG00020013331cpsf39983.554ENSOARG00000015073CPSF39983.554Ovis_aries
ENSORLG00020013331cpsf39983.554ENSPPAG00000042457CPSF39195.931Pan_paniscus
ENSORLG00020013331cpsf39983.554ENSPPRG00000016790CPSF39983.700Panthera_pardus
ENSORLG00020013331cpsf39883.923ENSPTIG00000003920CPSF39984.071Panthera_tigris_altaica
ENSORLG00020013331cpsf39983.554ENSPTRG00000011638CPSF39195.931Pan_troglodytes
ENSORLG00020013331cpsf39983.554ENSPANG00000016798CPSF39593.154Papio_anubis
ENSORLG00020013331cpsf310086.087ENSPKIG00000023646cpsf310086.087Paramormyrops_kingsleyae
ENSORLG00020013331cpsf39982.698ENSPSIG00000016144CPSF39982.698Pelodiscus_sinensis
ENSORLG00020013331cpsf36377.556ENSPMGG00000015311CPSF310079.012Periophthalmus_magnuspinnatus
ENSORLG00020013331cpsf310087.013ENSPMGG00000006141-10087.013Periophthalmus_magnuspinnatus
ENSORLG00020013331cpsf39983.113ENSPEMG00000017668Cpsf39983.260Peromyscus_maniculatus_bairdii
ENSORLG00020013331cpsf37987.890ENSPMAG00000004841cpsf310087.890Petromyzon_marinus
ENSORLG00020013331cpsf39683.008ENSPCIG00000009823CPSF39883.742Phascolarctos_cinereus
ENSORLG00020013331cpsf310092.566ENSPFOG00000015922cpsf310092.566Poecilia_formosa
ENSORLG00020013331cpsf310086.957ENSPFOG00000010418-10086.957Poecilia_formosa
ENSORLG00020013331cpsf310092.566ENSPLAG00000000882cpsf310092.566Poecilia_latipinna
ENSORLG00020013331cpsf36377.778ENSPLAG00000021300-10080.247Poecilia_latipinna
ENSORLG00020013331cpsf310092.566ENSPMEG00000018309cpsf310092.566Poecilia_mexicana
ENSORLG00020013331cpsf310081.884ENSPREG00000004482CPSF310081.884Poecilia_reticulata
ENSORLG00020013331cpsf310089.633ENSPREG00000014875cpsf310089.633Poecilia_reticulata
ENSORLG00020013331cpsf39979.295ENSPPYG00000012666CPSF39979.295Pongo_abelii
ENSORLG00020013331cpsf38464.218ENSPCAG00000015042CPSF38864.218Procavia_capensis
ENSORLG00020013331cpsf38884.880ENSPCOG00000023016CPSF39984.880Propithecus_coquereli
ENSORLG00020013331cpsf39983.724ENSPVAG00000005324CPSF39983.724Pteropus_vampyrus
ENSORLG00020013331cpsf38990.511ENSPNYG00000021047CPSF39190.511Pundamilia_nyererei
ENSORLG00020013331cpsf310092.274ENSPNYG00000004405cpsf310092.274Pundamilia_nyererei
ENSORLG00020013331cpsf39985.465ENSPNAG00000023060cpsf39985.465Pygocentrus_nattereri
ENSORLG00020013331cpsf39983.554ENSRNOG00000052418Cpsf39983.554Rattus_norvegicus
ENSORLG00020013331cpsf39978.561ENSRBIG00000041615CPSF39979.535Rhinopithecus_bieti
ENSORLG00020013331cpsf39983.554ENSRROG00000033792CPSF39983.554Rhinopithecus_roxellana
ENSORLG00020013331cpsf39539.234YLR277CYSH19739.234Saccharomyces_cerevisiae
ENSORLG00020013331cpsf39680.150ENSSBOG00000027263CPSF39780.150Saimiri_boliviensis_boliviensis
ENSORLG00020013331cpsf39983.113ENSSHAG00000007024CPSF39983.113Sarcophilus_harrisii
ENSORLG00020013331cpsf310085.797ENSSFOG00015002108cpsf310085.797Scleropages_formosus
ENSORLG00020013331cpsf39686.930ENSSMAG00000020534CPSF39786.930Scophthalmus_maximus
ENSORLG00020013331cpsf39986.337ENSSDUG00000018498CPSF39986.337Seriola_dumerili
ENSORLG00020013331cpsf310091.254ENSSDUG00000002828cpsf39791.254Seriola_dumerili
ENSORLG00020013331cpsf310091.108ENSSLDG00000008469cpsf39791.108Seriola_lalandi_dorsalis
ENSORLG00020013331cpsf39986.337ENSSLDG00000005234CPSF39986.337Seriola_lalandi_dorsalis
ENSORLG00020013331cpsf38881.989ENSSARG00000005186CPSF38981.989Sorex_araneus
ENSORLG00020013331cpsf39682.362ENSSPUG00000015525CPSF39782.362Sphenodon_punctatus
ENSORLG00020013331cpsf310092.274ENSSPAG00000018579cpsf310092.274Stegastes_partitus
ENSORLG00020013331cpsf39986.337ENSSPAG00000002906CPSF39986.337Stegastes_partitus
ENSORLG00020013331cpsf39983.554ENSSSCG00000020799CPSF39983.554Sus_scrofa
ENSORLG00020013331cpsf39983.187ENSTGUG00000013016CPSF310083.187Taeniopygia_guttata
ENSORLG00020013331cpsf36271.717ENSTRUG00000013905CPSF39971.717Takifugu_rubripes
ENSORLG00020013331cpsf39990.219ENSTRUG00000007030cpsf39890.219Takifugu_rubripes
ENSORLG00020013331cpsf38489.835ENSTBEG00000002707CPSF38489.835Tupaia_belangeri
ENSORLG00020013331cpsf38672.397ENSTTRG00000000861CPSF38772.397Tursiops_truncatus
ENSORLG00020013331cpsf39684.475ENSUAMG00000007535CPSF39484.475Ursus_americanus
ENSORLG00020013331cpsf39980.286ENSUMAG00000003676CPSF39488.889Ursus_maritimus
ENSORLG00020013331cpsf39284.069ENSVPAG00000008041CPSF310084.069Vicugna_pacos
ENSORLG00020013331cpsf39983.554ENSVVUG00000002194CPSF39983.554Vulpes_vulpes
ENSORLG00020013331cpsf39982.319ENSXETG00000008263cpsf39982.319Xenopus_tropicalis
ENSORLG00020013331cpsf35776.613ENSXCOG00000000957-8779.301Xiphophorus_couchianus
ENSORLG00020013331cpsf310092.128ENSXCOG00000019695cpsf310092.128Xiphophorus_couchianus
ENSORLG00020013331cpsf310087.536ENSXMAG00000027291CPSF310087.536Xiphophorus_maculatus
ENSORLG00020013331cpsf310092.420ENSXMAG00000009784cpsf310092.523Xiphophorus_maculatus

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