EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020013785 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: -
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 18692 bases
Position: chr13:6986643-7005334
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020029624	Npa1	PF11707.8	1.1e-81	1	1
ENSORLP00020012852	Npa1	PF11707.8	1.2e-81	1	1
ENSORLP00020012828	Npa1	PF11707.8	5e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020020151	-	8744	-	ENSORLP00020012852	2204 (aa)	-	-
ENSORLT00020020005	-	8558	-	ENSORLP00020029624	2248 (aa)	-	-
ENSORLT00020020117	-	8743	-	ENSORLP00020012828	2158 (aa)	-	-

Gene Model

Click here to download ENSORLG00020013785's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020013785's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020013785	urb1	99	43.392	ENSG00000142207	URB1	99	43.294	Homo_sapiens
ENSORLG00020013785	urb1	99	66.887	ENSAPOG00000020308	urb1	99	66.887	Acanthochromis_polyacanthus
ENSORLG00020013785	urb1	99	43.927	ENSAMEG00000011998	URB1	99	44.038	Ailuropoda_melanoleuca
ENSORLG00020013785	urb1	97	64.798	ENSACIG00000003248	urb1	97	65.072	Amphilophus_citrinellus
ENSORLG00020013785	urb1	99	63.685	ENSAOCG00000010364	urb1	99	63.685	Amphiprion_ocellaris
ENSORLG00020013785	urb1	97	74.528	ENSAPEG00000010758	urb1	99	74.414	Amphiprion_percula
ENSORLG00020013785	urb1	99	68.508	ENSATEG00000011790	urb1	99	67.420	Anabas_testudineus
ENSORLG00020013785	urb1	99	44.593	ENSAPLG00000012791	URB1	99	45.205	Anas_platyrhynchos
ENSORLG00020013785	urb1	100	43.609	ENSACAG00000002817	URB1	99	43.696	Anolis_carolinensis
ENSORLG00020013785	urb1	99	43.366	ENSANAG00000024617	URB1	99	43.325	Aotus_nancymaae
ENSORLG00020013785	urb1	99	68.463	ENSACLG00000024865	urb1	99	68.463	Astatotilapia_calliptera
ENSORLG00020013785	urb1	99	47.971	ENSAMXG00000012306	urb1	99	47.491	Astyanax_mexicanus
ENSORLG00020013785	urb1	99	43.301	ENSBTAG00000012412	URB1	99	43.389	Bos_taurus
ENSORLG00020013785	urb1	99	43.045	ENSCJAG00000009118	URB1	99	42.957	Callithrix_jacchus
ENSORLG00020013785	urb1	99	42.994	ENSCAFG00000008892	URB1	99	42.994	Canis_familiaris
ENSORLG00020013785	urb1	99	42.358	ENSCAFG00020025994	-	99	42.358	Canis_lupus_dingo
ENSORLG00020013785	urb1	99	42.739	ENSCAFG00020025987	-	99	42.739	Canis_lupus_dingo
ENSORLG00020013785	urb1	99	42.951	ENSCHIG00000015645	URB1	99	42.951	Capra_hircus
ENSORLG00020013785	urb1	99	43.406	ENSTSYG00000013286	URB1	99	43.374	Carlito_syrichta
ENSORLG00020013785	urb1	99	42.467	ENSCAPG00000015589	URB1	99	43.093	Cavia_aperea
ENSORLG00020013785	urb1	99	43.644	ENSCPOG00000006748	URB1	99	43.644	Cavia_porcellus
ENSORLG00020013785	urb1	99	43.209	ENSCCAG00000021299	URB1	99	43.256	Cebus_capucinus
ENSORLG00020013785	urb1	99	44.016	ENSCATG00000042630	URB1	99	43.976	Cercocebus_atys
ENSORLG00020013785	urb1	99	44.425	ENSCLAG00000005262	URB1	99	44.449	Chinchilla_lanigera
ENSORLG00020013785	urb1	99	43.088	ENSCSAG00000009584	URB1	99	43.056	Chlorocebus_sabaeus
ENSORLG00020013785	urb1	99	45.933	ENSCPBG00000006454	URB1	99	46.043	Chrysemys_picta_bellii
ENSORLG00020013785	urb1	99	43.780	ENSCANG00000031088	URB1	99	43.742	Colobus_angolensis_palliatus
ENSORLG00020013785	urb1	99	43.096	ENSCGRG00001010616	Urb1	99	42.963	Cricetulus_griseus_chok1gshd
ENSORLG00020013785	urb1	99	42.721	ENSCGRG00000015840	Urb1	99	43.250	Cricetulus_griseus_crigri
ENSORLG00020013785	urb1	99	61.922	ENSCSEG00000012616	urb1	99	61.922	Cynoglossus_semilaevis
ENSORLG00020013785	urb1	92	73.868	ENSCVAG00000009076	urb1	99	73.465	Cyprinodon_variegatus
ENSORLG00020013785	urb1	99	52.247	ENSDARG00000060308	urb1	99	52.423	Danio_rerio
ENSORLG00020013785	urb1	85	46.814	ENSDNOG00000015586	URB1	99	46.814	Dasypus_novemcinctus
ENSORLG00020013785	urb1	99	43.648	ENSDORG00000006735	Urb1	99	43.648	Dipodomys_ordii
ENSORLG00020013785	urb1	91	54.157	ENSETEG00000009080	URB1	84	52.602	Echinops_telfairi
ENSORLG00020013785	urb1	99	43.562	ENSEASG00005007711	URB1	99	44.992	Equus_asinus_asinus
ENSORLG00020013785	urb1	92	55.852	ENSECAG00000013206	URB1	99	44.080	Equus_caballus
ENSORLG00020013785	urb1	99	55.356	ENSELUG00000020516	urb1	99	55.399	Esox_lucius
ENSORLG00020013785	urb1	99	43.493	ENSFCAG00000002177	URB1	99	43.493	Felis_catus
ENSORLG00020013785	urb1	99	40.650	ENSFALG00000004636	URB1	99	41.247	Ficedula_albicollis
ENSORLG00020013785	urb1	99	43.555	ENSFDAG00000007288	URB1	95	43.493	Fukomys_damarensis
ENSORLG00020013785	urb1	99	65.055	ENSFHEG00000000202	urb1	99	67.259	Fundulus_heteroclitus
ENSORLG00020013785	urb1	94	56.343	ENSGMOG00000001838	urb1	94	57.031	Gadus_morhua
ENSORLG00020013785	urb1	99	45.346	ENSGALG00000015887	URB1	99	45.423	Gallus_gallus
ENSORLG00020013785	urb1	95	70.484	ENSGAFG00000020694	urb1	99	70.011	Gambusia_affinis
ENSORLG00020013785	urb1	99	67.289	ENSGACG00000011703	urb1	99	67.289	Gasterosteus_aculeatus
ENSORLG00020013785	urb1	99	45.585	ENSGAGG00000022544	URB1	99	45.585	Gopherus_agassizii
ENSORLG00020013785	urb1	99	43.329	ENSGGOG00000000285	URB1	99	43.250	Gorilla_gorilla
ENSORLG00020013785	urb1	99	68.463	ENSHBUG00000001904	urb1	99	68.463	Haplochromis_burtoni
ENSORLG00020013785	urb1	99	42.673	ENSHGLG00000004907	URB1	99	42.673	Heterocephalus_glaber_female
ENSORLG00020013785	urb1	99	43.056	ENSHGLG00100010749	URB1	99	43.056	Heterocephalus_glaber_male
ENSORLG00020013785	urb1	73	62.745	ENSHCOG00000018683	urb1	98	71.161	Hippocampus_comes
ENSORLG00020013785	urb1	99	47.018	ENSIPUG00000014721	urb1	99	47.149	Ictalurus_punctatus
ENSORLG00020013785	urb1	99	43.543	ENSSTOG00000004539	URB1	99	43.393	Ictidomys_tridecemlineatus
ENSORLG00020013785	urb1	94	69.914	ENSKMAG00000006001	urb1	99	69.680	Kryptolebias_marmoratus
ENSORLG00020013785	urb1	94	71.934	ENSLBEG00000027208	urb1	99	71.215	Labrus_bergylta
ENSORLG00020013785	urb1	99	42.514	ENSLACG00000017059	URB1	100	42.514	Latimeria_chalumnae
ENSORLG00020013785	urb1	99	50.850	ENSLOCG00000009190	urb1	99	50.850	Lepisosteus_oculatus
ENSORLG00020013785	urb1	99	43.425	ENSLAFG00000010407	URB1	99	43.425	Loxodonta_africana
ENSORLG00020013785	urb1	99	43.854	ENSMFAG00000034391	URB1	96	43.815	Macaca_fascicularis
ENSORLG00020013785	urb1	99	43.810	ENSMMUG00000010295	URB1	99	43.772	Macaca_mulatta
ENSORLG00020013785	urb1	99	43.297	ENSMNEG00000032981	URB1	99	43.088	Macaca_nemestrina
ENSORLG00020013785	urb1	99	43.986	ENSMLEG00000041435	URB1	99	43.946	Mandrillus_leucophaeus
ENSORLG00020013785	urb1	100	63.905	ENSMAMG00000011238	urb1	99	63.905	Mastacembelus_armatus
ENSORLG00020013785	urb1	99	64.279	ENSMZEG00005011862	urb1	99	64.279	Maylandia_zebra
ENSORLG00020013785	urb1	99	44.592	ENSMGAG00000014512	URB1	99	45.202	Meleagris_gallopavo
ENSORLG00020013785	urb1	92	51.205	ENSMAUG00000010516	Urb1	99	51.105	Mesocricetus_auratus
ENSORLG00020013785	urb1	99	43.775	ENSMICG00000016424	URB1	99	43.556	Microcebus_murinus
ENSORLG00020013785	urb1	99	43.288	ENSMOCG00000012613	Urb1	99	43.307	Microtus_ochrogaster
ENSORLG00020013785	urb1	99	43.605	ENSMODG00000021076	URB1	99	43.605	Monodelphis_domestica
ENSORLG00020013785	urb1	99	63.995	ENSMALG00000017411	urb1	99	63.906	Monopterus_albus
ENSORLG00020013785	urb1	99	43.152	MGP_CAROLIEiJ_G0020948	Urb1	99	43.089	Mus_caroli
ENSORLG00020013785	urb1	99	43.045	ENSMUSG00000039929	Urb1	99	43.045	Mus_musculus
ENSORLG00020013785	urb1	99	43.241	MGP_PahariEiJ_G0016653	Urb1	98	43.241	Mus_pahari
ENSORLG00020013785	urb1	99	43.076	MGP_SPRETEiJ_G0021854	Urb1	99	43.076	Mus_spretus
ENSORLG00020013785	urb1	99	43.282	ENSMPUG00000001123	URB1	99	43.395	Mustela_putorius_furo
ENSORLG00020013785	urb1	99	42.509	ENSNGAG00000001905	Urb1	99	42.509	Nannospalax_galili
ENSORLG00020013785	urb1	82	65.510	ENSNBRG00000001049	urb1	99	65.510	Neolamprologus_brichardi
ENSORLG00020013785	urb1	99	42.152	ENSNLEG00000026872	URB1	99	42.195	Nomascus_leucogenys
ENSORLG00020013785	urb1	89	55.814	ENSMEUG00000010828	URB1	88	55.814	Notamacropus_eugenii
ENSORLG00020013785	urb1	99	43.776	ENSOPRG00000013482	URB1	98	43.382	Ochotona_princeps
ENSORLG00020013785	urb1	99	43.805	ENSODEG00000002587	URB1	99	43.805	Octodon_degus
ENSORLG00020013785	urb1	99	68.744	ENSONIG00000005599	urb1	99	68.744	Oreochromis_niloticus
ENSORLG00020013785	urb1	99	44.372	ENSOCUG00000009381	URB1	99	44.372	Oryctolagus_cuniculus
ENSORLG00020013785	urb1	100	98.007	ENSORLG00000003429	urb1	100	97.998	Oryzias_latipes
ENSORLG00020013785	urb1	100	91.353	ENSORLG00015019421	urb1	99	97.790	Oryzias_latipes_hsok
ENSORLG00020013785	urb1	80	84.848	ENSOMEG00000002094	urb1	99	84.848	Oryzias_melastigma
ENSORLG00020013785	urb1	99	43.679	ENSOGAG00000017140	URB1	99	43.679	Otolemur_garnettii
ENSORLG00020013785	urb1	99	41.269	ENSOARG00000013679	URB1	99	48.017	Ovis_aries
ENSORLG00020013785	urb1	99	43.373	ENSPPAG00000003423	URB1	99	43.294	Pan_paniscus
ENSORLG00020013785	urb1	99	43.632	ENSPPRG00000023131	URB1	99	43.632	Panthera_pardus
ENSORLG00020013785	urb1	89	44.485	ENSPTIG00000016125	URB1	93	45.093	Panthera_tigris_altaica
ENSORLG00020013785	urb1	99	43.285	ENSPTRG00000013852	URB1	99	43.207	Pan_troglodytes
ENSORLG00020013785	urb1	99	43.898	ENSPANG00000021964	URB1	99	43.859	Papio_anubis
ENSORLG00020013785	urb1	99	52.079	ENSPKIG00000003683	urb1	99	52.275	Paramormyrops_kingsleyae
ENSORLG00020013785	urb1	99	43.406	ENSPEMG00000021205	Urb1	98	43.474	Peromyscus_maniculatus_bairdii
ENSORLG00020013785	urb1	80	32.604	ENSPMAG00000009733	URB1	99	33.333	Petromyzon_marinus
ENSORLG00020013785	urb1	99	42.838	ENSPCIG00000016350	URB1	99	43.275	Phascolarctos_cinereus
ENSORLG00020013785	urb1	99	67.419	ENSPLAG00000004371	urb1	99	67.306	Poecilia_latipinna
ENSORLG00020013785	urb1	99	67.834	ENSPMEG00000006634	urb1	99	67.788	Poecilia_mexicana
ENSORLG00020013785	urb1	99	67.168	ENSPREG00000013453	urb1	99	67.168	Poecilia_reticulata
ENSORLG00020013785	urb1	99	43.351	ENSPPYG00000011359	URB1	99	43.332	Pongo_abelii
ENSORLG00020013785	urb1	99	39.144	ENSPCAG00000007430	URB1	99	39.144	Procavia_capensis
ENSORLG00020013785	urb1	99	44.075	ENSPCOG00000022695	URB1	99	44.124	Propithecus_coquereli
ENSORLG00020013785	urb1	99	43.057	ENSPVAG00000000889	URB1	99	43.057	Pteropus_vampyrus
ENSORLG00020013785	urb1	99	65.179	ENSPNYG00000010589	urb1	99	65.179	Pundamilia_nyererei
ENSORLG00020013785	urb1	99	48.623	ENSPNAG00000019324	urb1	99	48.531	Pygocentrus_nattereri
ENSORLG00020013785	urb1	99	42.559	ENSRNOG00000002080	Urb1	99	42.708	Rattus_norvegicus
ENSORLG00020013785	urb1	99	43.879	ENSRBIG00000033122	URB1	99	43.840	Rhinopithecus_bieti
ENSORLG00020013785	urb1	99	43.766	ENSRROG00000040237	URB1	99	43.728	Rhinopithecus_roxellana
ENSORLG00020013785	urb1	99	42.964	ENSSBOG00000027672	URB1	99	42.926	Saimiri_boliviensis_boliviensis
ENSORLG00020013785	urb1	99	43.213	ENSSHAG00000005140	URB1	99	43.256	Sarcophilus_harrisii
ENSORLG00020013785	urb1	93	54.382	ENSSFOG00015000339	urb1	99	54.382	Scleropages_formosus
ENSORLG00020013785	urb1	99	69.193	ENSSMAG00000003782	urb1	99	69.149	Scophthalmus_maximus
ENSORLG00020013785	urb1	99	70.835	ENSSDUG00000012313	urb1	99	70.835	Seriola_dumerili
ENSORLG00020013785	urb1	99	70.658	ENSSLDG00000023179	urb1	99	70.658	Seriola_lalandi_dorsalis
ENSORLG00020013785	urb1	99	44.775	ENSSPUG00000012447	URB1	99	44.775	Sphenodon_punctatus
ENSORLG00020013785	urb1	100	69.339	ENSSPAG00000006325	urb1	100	69.339	Stegastes_partitus
ENSORLG00020013785	urb1	99	43.141	ENSSSCG00000032024	URB1	99	43.229	Sus_scrofa
ENSORLG00020013785	urb1	77	47.156	ENSTGUG00000013442	URB1	100	46.951	Taeniopygia_guttata
ENSORLG00020013785	urb1	99	62.384	ENSTRUG00000009372	urb1	99	62.384	Takifugu_rubripes
ENSORLG00020013785	urb1	99	60.382	ENSTNIG00000016277	urb1	99	60.382	Tetraodon_nigroviridis
ENSORLG00020013785	urb1	64	56.383	ENSTBEG00000010044	URB1	60	56.383	Tupaia_belangeri
ENSORLG00020013785	urb1	92	49.288	ENSTTRG00000007712	URB1	91	50.625	Tursiops_truncatus
ENSORLG00020013785	urb1	99	43.399	ENSUAMG00000012231	URB1	99	43.510	Ursus_americanus
ENSORLG00020013785	urb1	84	54.762	ENSUMAG00000017419	URB1	96	45.235	Ursus_maritimus
ENSORLG00020013785	urb1	70	59.200	ENSVPAG00000001164	URB1	71	59.200	Vicugna_pacos
ENSORLG00020013785	urb1	99	43.431	ENSVVUG00000000551	URB1	99	43.431	Vulpes_vulpes
ENSORLG00020013785	urb1	99	44.069	ENSXETG00000009895	urb1	99	43.766	Xenopus_tropicalis
ENSORLG00020013785	urb1	99	63.209	ENSXCOG00000005500	urb1	99	66.303	Xiphophorus_couchianus
ENSORLG00020013785	urb1	99	63.347	ENSXMAG00000007253	urb1	99	66.199	Xiphophorus_maculatus