EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020013853 (Gene tree)
Gene ID: -
Gene Symbol: scaf4b
Alias: -
Full Name: SR-related CTD-associated factor 4b
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 28360 bases
Position: chr13:6957984-6986343
Accession: ZDB-GENE-050506-42
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020029735	RRM_1	PF00076.22	1.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020020239	-	2924	-	ENSORLP00020029735	735 (aa)	-	-

Gene Model

Click here to download ENSORLG00020013853's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020013853's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020013853	scaf4b	100	66.050	ENSAPOG00000019615	scaf4b	100	68.164	Acanthochromis_polyacanthus
ENSORLG00020013853	scaf4b	68	56.410	ENSAPOG00000002946	scaf4a	65	55.914	Acanthochromis_polyacanthus
ENSORLG00020013853	scaf4b	100	70.145	ENSAOCG00000010433	scaf4b	100	69.312	Amphiprion_ocellaris
ENSORLG00020013853	scaf4b	57	70.349	ENSAOCG00000000615	scaf4a	65	55.914	Amphiprion_ocellaris
ENSORLG00020013853	scaf4b	100	70.277	ENSAPEG00000010913	scaf4b	100	69.444	Amphiprion_percula
ENSORLG00020013853	scaf4b	57	69.767	ENSAPEG00000021229	scaf4a	65	55.914	Amphiprion_percula
ENSORLG00020013853	scaf4b	98	66.131	ENSATEG00000011758	scaf4b	100	65.194	Anabas_testudineus
ENSORLG00020013853	scaf4b	86	63.208	ENSAPLG00000002509	SCAF4	50	58.798	Anas_platyrhynchos
ENSORLG00020013853	scaf4b	100	65.252	ENSACLG00000024833	scaf4b	100	65.252	Astatotilapia_calliptera
ENSORLG00020013853	scaf4b	70	57.455	ENSAMXG00000008585	scaf4a	66	58.545	Astyanax_mexicanus
ENSORLG00020013853	scaf4b	63	63.725	ENSCJAG00000008993	SCAF4	61	60.345	Callithrix_jacchus
ENSORLG00020013853	scaf4b	55	74.522	ENSCAFG00020026019	SCAF4	57	61.957	Canis_lupus_dingo
ENSORLG00020013853	scaf4b	73	42.808	ENSCPOG00000030311	-	53	40.881	Cavia_porcellus
ENSORLG00020013853	scaf4b	58	67.066	ENSCSEG00000019549	scaf4a	66	54.225	Cynoglossus_semilaevis
ENSORLG00020013853	scaf4b	100	57.330	ENSCSEG00000012808	-	99	58.213	Cynoglossus_semilaevis
ENSORLG00020013853	scaf4b	100	63.408	ENSCVAG00000009142	scaf4b	100	63.408	Cyprinodon_variegatus
ENSORLG00020013853	scaf4b	82	50.168	ENSDARG00000077093	scaf4a	69	55.720	Danio_rerio
ENSORLG00020013853	scaf4b	76	55.396	ENSDARG00000018854	scaf4b	73	56.842	Danio_rerio
ENSORLG00020013853	scaf4b	100	65.918	ENSFHEG00000007634	scaf4b	100	66.402	Fundulus_heteroclitus
ENSORLG00020013853	scaf4b	57	66.667	ENSGMOG00000015188	scaf4a	58	56.388	Gadus_morhua
ENSORLG00020013853	scaf4b	80	49.701	ENSGALG00000033965	SCAF4	50	58.798	Gallus_gallus
ENSORLG00020013853	scaf4b	63	62.437	ENSGACG00000020580	scaf4a	77	54.286	Gasterosteus_aculeatus
ENSORLG00020013853	scaf4b	57	73.885	ENSGGOG00000015557	SCAF4	60	56.028	Gorilla_gorilla
ENSORLG00020013853	scaf4b	53	80.714	ENSIPUG00000011285	scaf4	53	58.029	Ictalurus_punctatus
ENSORLG00020013853	scaf4b	100	68.373	ENSKMAG00000005742	scaf4b	100	66.711	Kryptolebias_marmoratus
ENSORLG00020013853	scaf4b	51	74.101	ENSLBEG00000014675	scaf4a	66	52.140	Labrus_bergylta
ENSORLG00020013853	scaf4b	53	71.631	ENSMALG00000013825	scaf4a	73	52.649	Monopterus_albus
ENSORLG00020013853	scaf4b	72	58.176	ENSONIG00000005610	scaf4b	74	91.250	Oreochromis_niloticus
ENSORLG00020013853	scaf4b	56	75.182	ENSONIG00000004687	scaf4a	55	53.667	Oreochromis_niloticus
ENSORLG00020013853	scaf4b	100	98.234	ENSORLG00000003420	scaf4b	100	98.234	Oryzias_latipes
ENSORLG00020013853	scaf4b	53	77.698	ENSPKIG00000022408	scaf4a	72	57.554	Paramormyrops_kingsleyae
ENSORLG00020013853	scaf4b	79	52.290	ENSPMGG00000016741	scaf4a	68	51.685	Periophthalmus_magnuspinnatus
ENSORLG00020013853	scaf4b	59	56.000	ENSPMAG00000006192	SCAF8	67	55.696	Petromyzon_marinus
ENSORLG00020013853	scaf4b	84	65.714	ENSPFOG00000003261	scaf4b	64	71.146	Poecilia_formosa
ENSORLG00020013853	scaf4b	56	75.362	ENSPFOG00000017156	scaf4a	57	54.878	Poecilia_formosa
ENSORLG00020013853	scaf4b	100	61.724	ENSPLAG00000004403	-	100	60.483	Poecilia_latipinna
ENSORLG00020013853	scaf4b	100	61.772	ENSPMEG00000006666	-	100	60.279	Poecilia_mexicana
ENSORLG00020013853	scaf4b	100	61.090	ENSPREG00000013510	scaf4b	100	60.380	Poecilia_reticulata
ENSORLG00020013853	scaf4b	100	65.252	ENSPNYG00000010526	scaf4b	100	65.252	Pundamilia_nyererei
ENSORLG00020013853	scaf4b	71	52.203	ENSPNAG00000016892	scaf4a	68	56.738	Pygocentrus_nattereri
ENSORLG00020013853	scaf4b	67	78.676	ENSPNAG00000015199	-	51	78.676	Pygocentrus_nattereri
ENSORLG00020013853	scaf4b	56	67.361	ENSSHAG00000009915	SCAF8	54	41.443	Sarcophilus_harrisii
ENSORLG00020013853	scaf4b	100	66.841	ENSSMAG00000003738	scaf4b	100	65.138	Scophthalmus_maximus
ENSORLG00020013853	scaf4b	78	53.650	ENSSMAG00000017901	scaf4a	65	56.115	Scophthalmus_maximus
ENSORLG00020013853	scaf4b	100	64.875	ENSSDUG00000012380	scaf4b	100	65.400	Seriola_dumerili
ENSORLG00020013853	scaf4b	100	64.744	ENSSLDG00000023152	-	100	65.269	Seriola_lalandi_dorsalis
ENSORLG00020013853	scaf4b	100	57.315	ENSTRUG00000009536	-	100	56.150	Takifugu_rubripes
ENSORLG00020013853	scaf4b	59	68.362	ENSTNIG00000009945	scaf4a	52	53.793	Tetraodon_nigroviridis
ENSORLG00020013853	scaf4b	81	39.087	ENSXETG00000013132	scaf8	53	40.202	Xenopus_tropicalis