EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020013991 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 155575 bases
Position: chr23:15249440-15405014
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020013018	TUDOR	PF00567.24	4.5e-26	1	1
ENSORLP00020012983	TUDOR	PF00567.24	4.7e-26	1	1
ENSORLP00020012983	SNase	PF00565.17	5.5e-67	1	4
ENSORLP00020012983	SNase	PF00565.17	5.5e-67	2	4
ENSORLP00020012983	SNase	PF00565.17	5.5e-67	3	4
ENSORLP00020012983	SNase	PF00565.17	5.5e-67	4	4
ENSORLP00020013018	SNase	PF00565.17	1.3e-63	1	4
ENSORLP00020013018	SNase	PF00565.17	1.3e-63	2	4
ENSORLP00020013018	SNase	PF00565.17	1.3e-63	3	4
ENSORLP00020013018	SNase	PF00565.17	1.3e-63	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020020373	-	7080	-	ENSORLP00020013018	895 (aa)	-	-
ENSORLT00020020325	-	4200	-	ENSORLP00020012983	911 (aa)	-	-

Gene Model

Click here to download ENSORLG00020013991's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020013991's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020013991	snd1	98	83.911	ENSG00000197157	SND1	98	83.911	Homo_sapiens
ENSORLG00020013991	snd1	100	94.402	ENSAPOG00000017599	snd1	100	94.402	Acanthochromis_polyacanthus
ENSORLG00020013991	snd1	100	82.823	ENSAMEG00000004664	SND1	93	83.835	Ailuropoda_melanoleuca
ENSORLG00020013991	snd1	100	90.999	ENSACIG00000003551	snd1	100	90.999	Amphilophus_citrinellus
ENSORLG00020013991	snd1	100	94.182	ENSAOCG00000014166	snd1	100	94.182	Amphiprion_ocellaris
ENSORLG00020013991	snd1	100	94.292	ENSAPEG00000007067	snd1	100	94.292	Amphiprion_percula
ENSORLG00020013991	snd1	99	94.719	ENSATEG00000018475	snd1	89	94.719	Anabas_testudineus
ENSORLG00020013991	snd1	98	84.022	ENSANAG00000034463	SND1	99	83.575	Aotus_nancymaae
ENSORLG00020013991	snd1	100	92.975	ENSACLG00000022897	snd1	100	92.975	Astatotilapia_calliptera
ENSORLG00020013991	snd1	99	89.451	ENSAMXG00000016318	snd1	98	90.179	Astyanax_mexicanus
ENSORLG00020013991	snd1	98	84.134	ENSBTAG00000010692	SND1	98	84.134	Bos_taurus
ENSORLG00020013991	snd1	99	46.767	WBGene00006626	tsn-1	97	47.305	Caenorhabditis_elegans
ENSORLG00020013991	snd1	98	83.799	ENSCJAG00000017668	SND1	99	83.860	Callithrix_jacchus
ENSORLG00020013991	snd1	100	83.114	ENSCAFG00000001700	SND1	98	84.134	Canis_familiaris
ENSORLG00020013991	snd1	100	83.114	ENSCAFG00020021639	SND1	98	84.134	Canis_lupus_dingo
ENSORLG00020013991	snd1	99	83.056	ENSCHIG00000023390	SND1	98	84.086	Capra_hircus
ENSORLG00020013991	snd1	71	87.719	ENSTSYG00000004979	SND1	96	87.719	Carlito_syrichta
ENSORLG00020013991	snd1	99	73.282	ENSCAPG00000010677	SND1	97	73.874	Cavia_aperea
ENSORLG00020013991	snd1	98	83.799	ENSCPOG00000006251	SND1	98	83.799	Cavia_porcellus
ENSORLG00020013991	snd1	98	84.022	ENSCCAG00000036847	SND1	98	84.086	Cebus_capucinus
ENSORLG00020013991	snd1	98	84.134	ENSCATG00000035214	SND1	99	84.199	Cercocebus_atys
ENSORLG00020013991	snd1	98	83.893	ENSCLAG00000011796	SND1	95	87.543	Chinchilla_lanigera
ENSORLG00020013991	snd1	98	84.134	ENSCSAG00000010182	SND1	98	84.134	Chlorocebus_sabaeus
ENSORLG00020013991	snd1	79	76.238	ENSCHOG00000002218	SND1	86	76.238	Choloepus_hoffmanni
ENSORLG00020013991	snd1	100	83.644	ENSCPBG00000018094	SND1	98	84.452	Chrysemys_picta_bellii
ENSORLG00020013991	snd1	98	56.368	ENSCING00000000524	-	98	56.368	Ciona_intestinalis
ENSORLG00020013991	snd1	99	56.659	ENSCSAVG00000008807	-	98	57.238	Ciona_savignyi
ENSORLG00020013991	snd1	98	84.134	ENSCANG00000035119	SND1	98	84.134	Colobus_angolensis_palliatus
ENSORLG00020013991	snd1	98	83.687	ENSCGRG00001022514	Snd1	95	87.197	Cricetulus_griseus_chok1gshd
ENSORLG00020013991	snd1	97	83.747	ENSCGRG00000012277	Snd1	99	83.747	Cricetulus_griseus_crigri
ENSORLG00020013991	snd1	100	92.536	ENSCSEG00000008661	snd1	100	92.536	Cynoglossus_semilaevis
ENSORLG00020013991	snd1	100	94.841	ENSCVAG00000010316	snd1	100	94.841	Cyprinodon_variegatus
ENSORLG00020013991	snd1	100	88.609	ENSDARG00000006766	snd1	96	92.714	Danio_rerio
ENSORLG00020013991	snd1	97	82.227	ENSDNOG00000006795	SND1	100	82.227	Dasypus_novemcinctus
ENSORLG00020013991	snd1	98	83.911	ENSDORG00000000336	Snd1	98	83.911	Dipodomys_ordii
ENSORLG00020013991	snd1	98	49.512	FBgn0035121	Tudor-SN	97	49.782	Drosophila_melanogaster
ENSORLG00020013991	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSORLG00020013991	snd1	61	67.027	ENSEBUG00000014201	-	84	77.174	Eptatretus_burgeri
ENSORLG00020013991	snd1	98	83.867	ENSEASG00005008513	SND1	98	82.747	Equus_asinus_asinus
ENSORLG00020013991	snd1	98	83.911	ENSECAG00000011451	SND1	98	83.911	Equus_caballus
ENSORLG00020013991	snd1	98	74.749	ENSEEUG00000014737	SND1	98	74.749	Erinaceus_europaeus
ENSORLG00020013991	snd1	99	88.364	ENSELUG00000001805	snd1	95	88.939	Esox_lucius
ENSORLG00020013991	snd1	100	83.004	ENSFCAG00000008289	SND1	98	84.022	Felis_catus
ENSORLG00020013991	snd1	98	83.911	ENSFDAG00000015881	SND1	98	83.911	Fukomys_damarensis
ENSORLG00020013991	snd1	100	92.052	ENSFHEG00000004093	snd1	99	93.515	Fundulus_heteroclitus
ENSORLG00020013991	snd1	75	82.203	ENSGMOG00000018932	snd1	64	82.203	Gadus_morhua
ENSORLG00020013991	snd1	100	94.512	ENSGAFG00000008421	snd1	100	94.512	Gambusia_affinis
ENSORLG00020013991	snd1	100	60.521	ENSGACG00000019793	snd1	100	60.521	Gasterosteus_aculeatus
ENSORLG00020013991	snd1	98	84.134	ENSGGOG00000009614	SND1	99	83.838	Gorilla_gorilla
ENSORLG00020013991	snd1	100	93.085	ENSHBUG00000019135	snd1	98	93.624	Haplochromis_burtoni
ENSORLG00020013991	snd1	98	83.799	ENSHGLG00000003618	SND1	95	87.370	Heterocephalus_glaber_female
ENSORLG00020013991	snd1	99	83.223	ENSHGLG00100012449	SND1	99	83.799	Heterocephalus_glaber_male
ENSORLG00020013991	snd1	100	92.097	ENSHCOG00000005266	snd1	100	92.097	Hippocampus_comes
ENSORLG00020013991	snd1	99	88.035	ENSIPUG00000013279	snd1	98	88.839	Ictalurus_punctatus
ENSORLG00020013991	snd1	98	84.134	ENSSTOG00000002140	SND1	98	84.134	Ictidomys_tridecemlineatus
ENSORLG00020013991	snd1	98	83.911	ENSJJAG00000009561	Snd1	98	83.911	Jaculus_jaculus
ENSORLG00020013991	snd1	100	94.402	ENSKMAG00000016997	snd1	100	94.402	Kryptolebias_marmoratus
ENSORLG00020013991	snd1	99	95.000	ENSLBEG00000013563	snd1	100	93.414	Labrus_bergylta
ENSORLG00020013991	snd1	98	87.708	ENSLOCG00000015537	snd1	98	87.708	Lepisosteus_oculatus
ENSORLG00020013991	snd1	99	83.187	ENSLAFG00000009696	SND1	98	84.358	Loxodonta_africana
ENSORLG00020013991	snd1	98	84.134	ENSMFAG00000038114	SND1	99	84.199	Macaca_fascicularis
ENSORLG00020013991	snd1	98	84.134	ENSMMUG00000015432	SND1	98	84.134	Macaca_mulatta
ENSORLG00020013991	snd1	98	84.134	ENSMNEG00000039808	SND1	97	87.831	Macaca_nemestrina
ENSORLG00020013991	snd1	98	84.022	ENSMLEG00000029040	SND1	97	87.831	Mandrillus_leucophaeus
ENSORLG00020013991	snd1	100	93.633	ENSMAMG00000011739	snd1	100	93.633	Mastacembelus_armatus
ENSORLG00020013991	snd1	100	92.975	ENSMZEG00005005681	snd1	100	92.975	Maylandia_zebra
ENSORLG00020013991	snd1	98	84.134	ENSMICG00000000097	SND1	98	84.134	Microcebus_murinus
ENSORLG00020013991	snd1	98	84.246	ENSMOCG00000005040	Snd1	98	84.246	Microtus_ochrogaster
ENSORLG00020013991	snd1	100	93.633	ENSMMOG00000001795	snd1	100	93.633	Mola_mola
ENSORLG00020013991	snd1	98	83.352	ENSMODG00000015182	SND1	98	83.352	Monodelphis_domestica
ENSORLG00020013991	snd1	100	93.304	ENSMALG00000012071	snd1	100	93.304	Monopterus_albus
ENSORLG00020013991	snd1	98	83.799	MGP_CAROLIEiJ_G0028159	Snd1	96	87.175	Mus_caroli
ENSORLG00020013991	snd1	98	83.575	ENSMUSG00000001424	Snd1	97	85.424	Mus_musculus
ENSORLG00020013991	snd1	98	83.799	MGP_PahariEiJ_G0021917	Snd1	97	87.175	Mus_pahari
ENSORLG00020013991	snd1	98	83.799	MGP_SPRETEiJ_G0029159	Snd1	97	85.763	Mus_spretus
ENSORLG00020013991	snd1	100	82.895	ENSMPUG00000006545	SND1	98	83.911	Mustela_putorius_furo
ENSORLG00020013991	snd1	97	83.055	ENSMLUG00000017130	SND1	99	83.055	Myotis_lucifugus
ENSORLG00020013991	snd1	98	83.911	ENSNGAG00000011186	Snd1	98	83.911	Nannospalax_galili
ENSORLG00020013991	snd1	100	93.194	ENSNBRG00000006681	snd1	100	93.194	Neolamprologus_brichardi
ENSORLG00020013991	snd1	98	84.134	ENSNLEG00000012263	SND1	97	87.716	Nomascus_leucogenys
ENSORLG00020013991	snd1	91	88.889	ENSOPRG00000013405	SND1	91	88.889	Ochotona_princeps
ENSORLG00020013991	snd1	98	84.116	ENSODEG00000011502	SND1	98	84.116	Octodon_degus
ENSORLG00020013991	snd1	100	93.414	ENSONIG00000011481	snd1	97	93.414	Oreochromis_niloticus
ENSORLG00020013991	snd1	98	83.146	ENSOANG00000000817	SND1	98	83.146	Ornithorhynchus_anatinus
ENSORLG00020013991	snd1	100	82.346	ENSOCUG00000001620	SND1	98	83.352	Oryctolagus_cuniculus
ENSORLG00020013991	snd1	100	99.561	ENSORLG00000015201	snd1	100	99.561	Oryzias_latipes
ENSORLG00020013991	snd1	100	99.671	ENSORLG00015012436	snd1	100	99.671	Oryzias_latipes_hsok
ENSORLG00020013991	snd1	100	96.707	ENSOMEG00000006406	snd1	100	96.707	Oryzias_melastigma
ENSORLG00020013991	snd1	98	83.946	ENSOGAG00000013356	SND1	93	83.946	Otolemur_garnettii
ENSORLG00020013991	snd1	97	81.736	ENSOARG00000002149	SND1	100	81.736	Ovis_aries
ENSORLG00020013991	snd1	98	84.022	ENSPPAG00000042947	SND1	99	83.575	Pan_paniscus
ENSORLG00020013991	snd1	100	83.004	ENSPPRG00000004494	SND1	98	84.022	Panthera_pardus
ENSORLG00020013991	snd1	100	82.895	ENSPTIG00000014214	SND1	98	83.911	Panthera_tigris_altaica
ENSORLG00020013991	snd1	98	84.022	ENSPTRG00000023911	SND1	99	83.575	Pan_troglodytes
ENSORLG00020013991	snd1	97	84.199	ENSPANG00000011997	SND1	99	84.199	Papio_anubis
ENSORLG00020013991	snd1	99	86.013	ENSPKIG00000023494	snd1	98	86.349	Paramormyrops_kingsleyae
ENSORLG00020013991	snd1	93	92.703	ENSPMGG00000003629	snd1	100	92.703	Periophthalmus_magnuspinnatus
ENSORLG00020013991	snd1	98	84.022	ENSPEMG00000010240	Snd1	98	84.022	Peromyscus_maniculatus_bairdii
ENSORLG00020013991	snd1	97	74.424	ENSPMAG00000007915	-	99	73.815	Petromyzon_marinus
ENSORLG00020013991	snd1	98	83.911	ENSPCIG00000011561	SND1	98	83.911	Phascolarctos_cinereus
ENSORLG00020013991	snd1	100	93.963	ENSPFOG00000001557	snd1	100	93.963	Poecilia_formosa
ENSORLG00020013991	snd1	100	94.072	ENSPLAG00000018459	snd1	97	94.072	Poecilia_latipinna
ENSORLG00020013991	snd1	100	94.182	ENSPMEG00000006803	snd1	100	94.182	Poecilia_mexicana
ENSORLG00020013991	snd1	100	93.963	ENSPREG00000002189	snd1	100	93.963	Poecilia_reticulata
ENSORLG00020013991	snd1	91	88.889	ENSPPYG00000017972	SND1	98	88.889	Pongo_abelii
ENSORLG00020013991	snd1	98	73.855	ENSPCAG00000011305	SND1	98	73.855	Procavia_capensis
ENSORLG00020013991	snd1	98	84.134	ENSPCOG00000026791	SND1	100	84.216	Propithecus_coquereli
ENSORLG00020013991	snd1	98	81.899	ENSPVAG00000013945	SND1	98	81.899	Pteropus_vampyrus
ENSORLG00020013991	snd1	100	92.865	ENSPNYG00000000932	snd1	100	92.865	Pundamilia_nyererei
ENSORLG00020013991	snd1	99	89.231	ENSPNAG00000001206	snd1	98	89.732	Pygocentrus_nattereri
ENSORLG00020013991	snd1	98	83.687	ENSRNOG00000031173	Snd1	100	82.864	Rattus_norvegicus
ENSORLG00020013991	snd1	71	88.447	ENSRBIG00000027782	-	93	88.447	Rhinopithecus_bieti
ENSORLG00020013991	snd1	98	84.134	ENSRROG00000033020	SND1	98	84.134	Rhinopithecus_roxellana
ENSORLG00020013991	snd1	98	83.911	ENSSBOG00000032461	SND1	99	83.464	Saimiri_boliviensis_boliviensis
ENSORLG00020013991	snd1	98	80.449	ENSSHAG00000015359	SND1	100	80.449	Sarcophilus_harrisii
ENSORLG00020013991	snd1	98	87.916	ENSSFOG00015001103	snd1	98	87.916	Scleropages_formosus
ENSORLG00020013991	snd1	100	92.865	ENSSMAG00000001932	snd1	95	92.865	Scophthalmus_maximus
ENSORLG00020013991	snd1	100	93.853	ENSSDUG00000002699	snd1	94	93.853	Seriola_dumerili
ENSORLG00020013991	snd1	100	86.608	ENSSLDG00000001950	snd1	100	86.608	Seriola_lalandi_dorsalis
ENSORLG00020013991	snd1	88	80.118	ENSSARG00000004877	SND1	92	80.118	Sorex_araneus
ENSORLG00020013991	snd1	71	81.109	ENSSPUG00000017586	SND1	96	81.109	Sphenodon_punctatus
ENSORLG00020013991	snd1	74	95.262	ENSSPAG00000021398	snd1	99	95.262	Stegastes_partitus
ENSORLG00020013991	snd1	98	83.911	ENSSSCG00000016590	SND1	98	83.911	Sus_scrofa
ENSORLG00020013991	snd1	100	91.779	ENSTRUG00000014067	snd1	100	97.222	Takifugu_rubripes
ENSORLG00020013991	snd1	100	91.548	ENSTNIG00000011019	snd1	100	91.548	Tetraodon_nigroviridis
ENSORLG00020013991	snd1	95	78.706	ENSTBEG00000003999	SND1	100	78.706	Tupaia_belangeri
ENSORLG00020013991	snd1	98	79.777	ENSTTRG00000006059	SND1	98	79.777	Tursiops_truncatus
ENSORLG00020013991	snd1	87	82.129	ENSUAMG00000005604	-	93	82.129	Ursus_americanus
ENSORLG00020013991	snd1	70	77.285	ENSUAMG00000002820	-	84	79.726	Ursus_americanus
ENSORLG00020013991	snd1	99	83.853	ENSUMAG00000005960	SND1	98	84.022	Ursus_maritimus
ENSORLG00020013991	snd1	77	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSORLG00020013991	snd1	100	83.004	ENSVVUG00000007226	SND1	98	84.022	Vulpes_vulpes
ENSORLG00020013991	snd1	97	80.854	ENSXETG00000023043	snd1	100	80.300	Xenopus_tropicalis
ENSORLG00020013991	snd1	94	91.805	ENSXCOG00000013629	snd1	99	91.805	Xiphophorus_couchianus
ENSORLG00020013991	snd1	100	94.731	ENSXMAG00000011469	snd1	100	94.731	Xiphophorus_maculatus