EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020015343 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: -
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 16202 bases
Position: chr14:7753321-7769522
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020014342	EST1	PF10374.9	1.4e-13	1	1
ENSORLP00020014342	EST1_DNA_bind	PF10373.9	5.2e-57	1	1
ENSORLP00020014342	PIN_4	PF13638.6	3.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020033005	-	8578	-	ENSORLP00020014342	1637 (aa)	-	-

Gene Model

Click here to download ENSORLG00020015343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020015343's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020015343	smg6	75	53.930	ENSG00000070366	SMG6	100	57.221	Homo_sapiens
ENSORLG00020015343	smg6	100	70.472	ENSAPOG00000019448	smg6	100	70.567	Acanthochromis_polyacanthus
ENSORLG00020015343	smg6	85	54.681	ENSAMEG00000007632	SMG6	94	54.423	Ailuropoda_melanoleuca
ENSORLG00020015343	smg6	93	68.887	ENSACIG00000012997	smg6	100	68.475	Amphilophus_citrinellus
ENSORLG00020015343	smg6	100	71.010	ENSAOCG00000002630	smg6	100	71.164	Amphiprion_ocellaris
ENSORLG00020015343	smg6	100	70.592	ENSAPEG00000019101	smg6	100	70.746	Amphiprion_percula
ENSORLG00020015343	smg6	100	68.274	ENSATEG00000006483	smg6	100	68.195	Anabas_testudineus
ENSORLG00020015343	smg6	62	49.476	ENSACAG00000011783	SMG6	88	46.867	Anolis_carolinensis
ENSORLG00020015343	smg6	79	52.798	ENSANAG00000035760	SMG6	89	52.027	Aotus_nancymaae
ENSORLG00020015343	smg6	100	68.089	ENSACLG00000005288	smg6	100	68.981	Astatotilapia_calliptera
ENSORLG00020015343	smg6	66	65.571	ENSAMXG00000017326	smg6	97	65.571	Astyanax_mexicanus
ENSORLG00020015343	smg6	74	54.346	ENSBTAG00000000267	SMG6	84	54.403	Bos_taurus
ENSORLG00020015343	smg6	74	54.396	ENSCJAG00000001820	SMG6	87	52.327	Callithrix_jacchus
ENSORLG00020015343	smg6	74	54.403	ENSCAFG00000019260	SMG6	83	54.301	Canis_familiaris
ENSORLG00020015343	smg6	74	54.403	ENSCAFG00020009770	SMG6	83	54.301	Canis_lupus_dingo
ENSORLG00020015343	smg6	74	54.503	ENSCHIG00000021998	SMG6	84	54.481	Capra_hircus
ENSORLG00020015343	smg6	74	54.209	ENSTSYG00000003406	SMG6	100	56.673	Carlito_syrichta
ENSORLG00020015343	smg6	74	45.491	ENSCAPG00000016197	SMG6	81	50.797	Cavia_aperea
ENSORLG00020015343	smg6	74	54.022	ENSCPOG00000014878	SMG6	83	58.852	Cavia_porcellus
ENSORLG00020015343	smg6	79	52.129	ENSCCAG00000035801	SMG6	89	51.879	Cebus_capucinus
ENSORLG00020015343	smg6	74	54.245	ENSCATG00000031956	SMG6	83	54.416	Cercocebus_atys
ENSORLG00020015343	smg6	78	53.233	ENSCLAG00000006748	SMG6	89	53.047	Chinchilla_lanigera
ENSORLG00020015343	smg6	74	54.481	ENSCSAG00000013800	SMG6	83	54.653	Chlorocebus_sabaeus
ENSORLG00020015343	smg6	76	53.333	ENSCPBG00000020369	SMG6	85	53.067	Chrysemys_picta_bellii
ENSORLG00020015343	smg6	74	54.245	ENSCANG00000031764	SMG6	100	57.587	Colobus_angolensis_palliatus
ENSORLG00020015343	smg6	74	49.604	ENSCGRG00000007782	Smg6	90	47.791	Cricetulus_griseus_crigri
ENSORLG00020015343	smg6	100	63.309	ENSCSEG00000012757	smg6	100	63.909	Cynoglossus_semilaevis
ENSORLG00020015343	smg6	100	65.293	ENSCVAG00000012789	smg6	100	64.875	Cyprinodon_variegatus
ENSORLG00020015343	smg6	100	53.695	ENSDARG00000100481	smg6	100	53.448	Danio_rerio
ENSORLG00020015343	smg6	86	54.360	ENSDNOG00000048283	SMG6	95	54.101	Dasypus_novemcinctus
ENSORLG00020015343	smg6	74	50.587	ENSDORG00000016614	Smg6	83	58.373	Dipodomys_ordii
ENSORLG00020015343	smg6	62	87.500	ENSETEG00000016790	SMG6	70	87.500	Echinops_telfairi
ENSORLG00020015343	smg6	60	47.036	ENSEBUG00000005059	smg6	63	46.304	Eptatretus_burgeri
ENSORLG00020015343	smg6	74	54.574	ENSEASG00005009318	SMG6	83	54.236	Equus_asinus_asinus
ENSORLG00020015343	smg6	74	54.495	ENSECAG00000006519	SMG6	83	54.157	Equus_caballus
ENSORLG00020015343	smg6	86	46.488	ENSEEUG00000003493	SMG6	91	56.621	Erinaceus_europaeus
ENSORLG00020015343	smg6	76	70.599	ENSELUG00000005934	smg6	93	67.786	Esox_lucius
ENSORLG00020015343	smg6	74	54.796	ENSFCAG00000028817	SMG6	83	54.459	Felis_catus
ENSORLG00020015343	smg6	77	52.640	ENSFALG00000006538	SMG6	88	53.175	Ficedula_albicollis
ENSORLG00020015343	smg6	74	54.517	ENSFDAG00000015106	SMG6	82	58.373	Fukomys_damarensis
ENSORLG00020015343	smg6	100	67.431	ENSFHEG00000013282	smg6	100	67.008	Fundulus_heteroclitus
ENSORLG00020015343	smg6	88	53.333	ENSGALG00000003108	SMG6	97	53.369	Gallus_gallus
ENSORLG00020015343	smg6	100	66.948	ENSGAFG00000000379	smg6	100	66.707	Gambusia_affinis
ENSORLG00020015343	smg6	78	73.098	ENSGACG00000020521	smg6	98	72.642	Gasterosteus_aculeatus
ENSORLG00020015343	smg6	76	51.776	ENSGAGG00000025617	SMG6	89	51.577	Gopherus_agassizii
ENSORLG00020015343	smg6	74	54.396	ENSGGOG00000017156	SMG6	83	54.216	Gorilla_gorilla
ENSORLG00020015343	smg6	100	68.029	ENSHBUG00000021311	smg6	100	67.829	Haplochromis_burtoni
ENSORLG00020015343	smg6	74	54.245	ENSHGLG00000012882	SMG6	82	58.852	Heterocephalus_glaber_female
ENSORLG00020015343	smg6	74	54.324	ENSHGLG00100017815	SMG6	82	58.852	Heterocephalus_glaber_male
ENSORLG00020015343	smg6	65	68.347	ENSHCOG00000008761	smg6	83	68.089	Hippocampus_comes
ENSORLG00020015343	smg6	100	51.639	ENSIPUG00000012493	smg6	100	51.142	Ictalurus_punctatus
ENSORLG00020015343	smg6	74	54.046	ENSSTOG00000028127	SMG6	83	58.373	Ictidomys_tridecemlineatus
ENSORLG00020015343	smg6	58	50.200	ENSJJAG00000015367	Smg6	79	48.688	Jaculus_jaculus
ENSORLG00020015343	smg6	100	67.849	ENSKMAG00000000279	smg6	100	67.651	Kryptolebias_marmoratus
ENSORLG00020015343	smg6	100	66.766	ENSLBEG00000002184	smg6	100	66.210	Labrus_bergylta
ENSORLG00020015343	smg6	74	53.967	ENSLAFG00000001261	SMG6	83	53.864	Loxodonta_africana
ENSORLG00020015343	smg6	74	54.481	ENSMFAG00000003394	SMG6	83	54.653	Macaca_fascicularis
ENSORLG00020015343	smg6	74	54.403	ENSMMUG00000023161	SMG6	83	54.574	Macaca_mulatta
ENSORLG00020015343	smg6	74	52.561	ENSMNEG00000044592	SMG6	83	52.727	Macaca_nemestrina
ENSORLG00020015343	smg6	70	58.627	ENSMLEG00000029353	SMG6	84	58.627	Mandrillus_leucophaeus
ENSORLG00020015343	smg6	100	68.301	ENSMAMG00000020119	smg6	100	69.290	Mastacembelus_armatus
ENSORLG00020015343	smg6	100	68.029	ENSMZEG00005024736	smg6	100	67.889	Maylandia_zebra
ENSORLG00020015343	smg6	53	52.250	ENSMGAG00000005401	-	81	51.694	Meleagris_gallopavo
ENSORLG00020015343	smg6	74	54.753	ENSMICG00000012913	SMG6	83	54.495	Microcebus_murinus
ENSORLG00020015343	smg6	100	63.505	ENSMMOG00000010883	smg6	100	62.493	Mola_mola
ENSORLG00020015343	smg6	92	53.590	ENSMODG00000010622	SMG6	100	52.830	Monodelphis_domestica
ENSORLG00020015343	smg6	100	67.481	ENSMALG00000001106	smg6	100	67.224	Monopterus_albus
ENSORLG00020015343	smg6	74	53.574	MGP_CAROLIEiJ_G0016729	Smg6	95	65.029	Mus_caroli
ENSORLG00020015343	smg6	74	53.937	ENSMUSG00000038290	Smg6	95	65.029	Mus_musculus
ENSORLG00020015343	smg6	74	53.307	MGP_PahariEiJ_G0017866	Smg6	92	66.465	Mus_pahari
ENSORLG00020015343	smg6	74	53.816	MGP_SPRETEiJ_G0017572	Smg6	95	64.740	Mus_spretus
ENSORLG00020015343	smg6	74	54.717	ENSMPUG00000013046	SMG6	83	54.380	Mustela_putorius_furo
ENSORLG00020015343	smg6	74	54.538	ENSMLUG00000005739	SMG6	83	54.315	Myotis_lucifugus
ENSORLG00020015343	smg6	74	53.641	ENSNGAG00000007287	Smg6	83	57.895	Nannospalax_galili
ENSORLG00020015343	smg6	97	66.232	ENSNBRG00000009511	smg6	99	68.109	Neolamprologus_brichardi
ENSORLG00020015343	smg6	74	54.317	ENSNLEG00000017171	SMG6	100	57.221	Nomascus_leucogenys
ENSORLG00020015343	smg6	79	52.455	ENSMEUG00000015804	SMG6	91	51.822	Notamacropus_eugenii
ENSORLG00020015343	smg6	52	60.104	ENSOPRG00000000579	SMG6	83	59.091	Ochotona_princeps
ENSORLG00020015343	smg6	78	47.598	ENSODEG00000008038	SMG6	87	46.997	Octodon_degus
ENSORLG00020015343	smg6	100	68.750	ENSONIG00000005594	smg6	100	72.894	Oreochromis_niloticus
ENSORLG00020015343	smg6	74	54.674	ENSOCUG00000013018	SMG6	83	54.452	Oryctolagus_cuniculus
ENSORLG00020015343	smg6	100	98.903	ENSORLG00000003317	smg6	100	98.903	Oryzias_latipes
ENSORLG00020015343	smg6	100	98.659	ENSORLG00015020454	smg6	100	98.659	Oryzias_latipes_hsok
ENSORLG00020015343	smg6	100	88.902	ENSOMEG00000010838	smg6	100	90.000	Oryzias_melastigma
ENSORLG00020015343	smg6	74	54.481	ENSOGAG00000004483	SMG6	73	57.862	Otolemur_garnettii
ENSORLG00020015343	smg6	74	54.503	ENSOARG00000015076	SMG6	86	54.481	Ovis_aries
ENSORLG00020015343	smg6	74	54.239	ENSPPAG00000043296	SMG6	94	53.980	Pan_paniscus
ENSORLG00020015343	smg6	74	54.724	ENSPPRG00000014581	SMG6	83	54.502	Panthera_pardus
ENSORLG00020015343	smg6	74	54.724	ENSPTIG00000008925	SMG6	100	57.221	Panthera_tigris_altaica
ENSORLG00020015343	smg6	74	54.396	ENSPTRG00000008544	SMG6	100	57.221	Pan_troglodytes
ENSORLG00020015343	smg6	74	54.324	ENSPANG00000024588	SMG6	83	54.495	Papio_anubis
ENSORLG00020015343	smg6	68	51.691	ENSPSIG00000006660	SMG6	81	51.396	Pelodiscus_sinensis
ENSORLG00020015343	smg6	94	75.238	ENSPMGG00000000844	smg6	99	74.830	Periophthalmus_magnuspinnatus
ENSORLG00020015343	smg6	78	52.624	ENSPEMG00000020707	Smg6	84	57.416	Peromyscus_maniculatus_bairdii
ENSORLG00020015343	smg6	100	67.877	ENSPFOG00000012035	smg6	99	71.639	Poecilia_formosa
ENSORLG00020015343	smg6	100	67.494	ENSPLAG00000017660	smg6	100	66.948	Poecilia_latipinna
ENSORLG00020015343	smg6	100	67.816	ENSPMEG00000000258	smg6	100	66.948	Poecilia_mexicana
ENSORLG00020015343	smg6	100	67.047	ENSPREG00000010066	smg6	100	66.407	Poecilia_reticulata
ENSORLG00020015343	smg6	74	50.391	ENSPPYG00000007790	SMG6	83	50.196	Pongo_abelii
ENSORLG00020015343	smg6	71	57.859	ENSPCAG00000000552	SMG6	79	57.859	Procavia_capensis
ENSORLG00020015343	smg6	74	54.724	ENSPCOG00000020925	SMG6	83	54.295	Propithecus_coquereli
ENSORLG00020015343	smg6	71	61.104	ENSPVAG00000002159	SMG6	69	61.104	Pteropus_vampyrus
ENSORLG00020015343	smg6	93	66.645	ENSPNYG00000024151	smg6	99	67.821	Pundamilia_nyererei
ENSORLG00020015343	smg6	100	49.940	ENSPNAG00000015480	smg6	100	49.881	Pygocentrus_nattereri
ENSORLG00020015343	smg6	78	52.256	ENSRNOG00000003041	Smg6	95	65.029	Rattus_norvegicus
ENSORLG00020015343	smg6	74	54.638	ENSRBIG00000024746	SMG6	83	54.811	Rhinopithecus_bieti
ENSORLG00020015343	smg6	74	54.638	ENSRROG00000030423	SMG6	100	57.587	Rhinopithecus_roxellana
ENSORLG00020015343	smg6	78	52.487	ENSSBOG00000022518	SMG6	88	50.894	Saimiri_boliviensis_boliviensis
ENSORLG00020015343	smg6	79	52.683	ENSSHAG00000010045	SMG6	89	52.345	Sarcophilus_harrisii
ENSORLG00020015343	smg6	94	52.655	ENSSFOG00015005436	smg6	91	53.287	Scleropages_formosus
ENSORLG00020015343	smg6	100	67.122	ENSSMAG00000019777	smg6	100	66.865	Scophthalmus_maximus
ENSORLG00020015343	smg6	100	70.346	ENSSDUG00000016412	smg6	100	70.030	Seriola_dumerili
ENSORLG00020015343	smg6	91	70.743	ENSSLDG00000020747	smg6	98	70.395	Seriola_lalandi_dorsalis
ENSORLG00020015343	smg6	74	52.802	ENSSPUG00000007152	SMG6	86	50.709	Sphenodon_punctatus
ENSORLG00020015343	smg6	100	71.112	ENSSPAG00000015633	smg6	100	71.249	Stegastes_partitus
ENSORLG00020015343	smg6	74	54.917	ENSSSCG00000017826	SMG6	83	54.344	Sus_scrofa
ENSORLG00020015343	smg6	77	52.528	ENSTGUG00000005836	SMG6	88	52.776	Taeniopygia_guttata
ENSORLG00020015343	smg6	91	63.043	ENSTRUG00000000358	smg6	98	64.162	Takifugu_rubripes
ENSORLG00020015343	smg6	93	70.575	ENSTNIG00000016164	smg6	100	71.528	Tetraodon_nigroviridis
ENSORLG00020015343	smg6	74	52.381	ENSTBEG00000011424	SMG6	83	52.102	Tupaia_belangeri
ENSORLG00020015343	smg6	66	55.000	ENSTTRG00000001175	SMG6	74	55.000	Tursiops_truncatus
ENSORLG00020015343	smg6	74	54.859	ENSUAMG00000025152	SMG6	85	54.367	Ursus_americanus
ENSORLG00020015343	smg6	74	54.717	ENSUMAG00000009306	SMG6	85	54.459	Ursus_maritimus
ENSORLG00020015343	smg6	60	85.185	ENSVPAG00000000225	SMG6	71	85.185	Vicugna_pacos
ENSORLG00020015343	smg6	74	54.662	ENSVVUG00000021727	SMG6	85	54.545	Vulpes_vulpes
ENSORLG00020015343	smg6	66	53.517	ENSXETG00000023799	SMG6	74	52.697	Xenopus_tropicalis
ENSORLG00020015343	smg6	98	65.830	ENSXCOG00000009867	smg6	99	65.217	Xiphophorus_couchianus
ENSORLG00020015343	smg6	100	67.367	ENSXMAG00000010321	smg6	100	66.887	Xiphophorus_maculatus