EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020015779 (Gene tree)
Gene ID: -
Gene Symbol: smg7
Alias: -
Full Name: SMG7 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Minus strand
Length: 16541 bases
Position: chr17:10262933-10279473
Accession: ZDB-GENE-030131-9122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020014699	EST1	PF10374.9	2.3e-25	1	1
ENSORLP00020014719	EST1	PF10374.9	2.4e-25	1	1
ENSORLP00020014769	EST1	PF10374.9	2.5e-25	1	1
ENSORLP00020014638	EST1	PF10374.9	1.6e-21	1	1
ENSORLP00020014699	EST1_DNA_bind	PF10373.9	9.5e-47	1	1
ENSORLP00020014719	EST1_DNA_bind	PF10373.9	9.9e-47	1	1
ENSORLP00020014769	EST1_DNA_bind	PF10373.9	1e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020033120	-	657	-	ENSORLP00020014638	218 (aa)	-	-
ENSORLT00020022695	-	5902	-	ENSORLP00020014769	1144 (aa)	-	-
ENSORLT00020022512	-	5752	-	ENSORLP00020014699	1094 (aa)	-	-
ENSORLT00020022549	-	5842	-	ENSORLP00020014719	1124 (aa)	-	-

Gene Model

Click here to download ENSORLG00020015779's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020015779's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020015779	smg7	78	85.057	ENSG00000116698	SMG7	88	90.683	Homo_sapiens
ENSORLG00020015779	smg7	95	87.202	ENSAPOG00000009611	smg7	99	68.883	Acanthochromis_polyacanthus
ENSORLG00020015779	smg7	99	64.354	ENSAMEG00000002357	SMG7	100	63.271	Ailuropoda_melanoleuca
ENSORLG00020015779	smg7	97	79.307	ENSACIG00000015152	smg7	100	79.307	Amphilophus_citrinellus
ENSORLG00020015779	smg7	100	81.068	ENSAOCG00000013538	smg7	100	81.068	Amphiprion_ocellaris
ENSORLG00020015779	smg7	100	80.833	ENSAPEG00000007851	smg7	100	80.833	Amphiprion_percula
ENSORLG00020015779	smg7	100	81.098	ENSATEG00000006931	smg7	100	80.662	Anabas_testudineus
ENSORLG00020015779	smg7	70	92.763	ENSAPLG00000015811	SMG7	99	63.249	Anas_platyrhynchos
ENSORLG00020015779	smg7	98	68.056	ENSACAG00000014989	SMG7	99	63.344	Anolis_carolinensis
ENSORLG00020015779	smg7	82	81.967	ENSANAG00000028114	SMG7	87	89.375	Aotus_nancymaae
ENSORLG00020015779	smg7	100	80.956	ENSACLG00000022079	smg7	100	80.369	Astatotilapia_calliptera
ENSORLG00020015779	smg7	100	74.432	ENSAMXG00000020809	smg7	100	75.000	Astyanax_mexicanus
ENSORLG00020015779	smg7	99	63.848	ENSBTAG00000008003	SMG7	99	63.676	Bos_taurus
ENSORLG00020015779	smg7	82	83.607	ENSCJAG00000005135	SMG7	87	91.250	Callithrix_jacchus
ENSORLG00020015779	smg7	70	92.763	ENSCAFG00000013276	SMG7	97	62.448	Canis_familiaris
ENSORLG00020015779	smg7	99	64.138	ENSCAFG00020015475	SMG7	89	88.415	Canis_lupus_dingo
ENSORLG00020015779	smg7	74	88.820	ENSCHIG00000018192	SMG7	99	62.594	Capra_hircus
ENSORLG00020015779	smg7	78	85.882	ENSTSYG00000002667	SMG7	85	87.879	Carlito_syrichta
ENSORLG00020015779	smg7	70	92.763	ENSCPOG00000008906	SMG7	99	62.259	Cavia_porcellus
ENSORLG00020015779	smg7	82	82.418	ENSCCAG00000028596	SMG7	85	91.083	Cebus_capucinus
ENSORLG00020015779	smg7	78	85.057	ENSCATG00000011063	SMG7	85	91.083	Cercocebus_atys
ENSORLG00020015779	smg7	99	64.021	ENSCLAG00000010751	SMG7	99	64.193	Chinchilla_lanigera
ENSORLG00020015779	smg7	70	92.763	ENSCSAG00000012654	SMG7	97	62.895	Chlorocebus_sabaeus
ENSORLG00020015779	smg7	91	55.415	ENSCHOG00000010522	SMG7	82	61.494	Choloepus_hoffmanni
ENSORLG00020015779	smg7	99	65.423	ENSCPBG00000015724	SMG7	99	64.013	Chrysemys_picta_bellii
ENSORLG00020015779	smg7	70	52.201	ENSCING00000006953	-	97	53.651	Ciona_intestinalis
ENSORLG00020015779	smg7	78	85.057	ENSCANG00000015680	SMG7	87	90.000	Colobus_angolensis_palliatus
ENSORLG00020015779	smg7	99	63.518	ENSCGRG00001013705	Smg7	99	63.605	Cricetulus_griseus_chok1gshd
ENSORLG00020015779	smg7	99	63.359	ENSCGRG00000018401	Smg7	100	63.534	Cricetulus_griseus_crigri
ENSORLG00020015779	smg7	74	91.925	ENSCSEG00000007392	-	90	91.925	Cynoglossus_semilaevis
ENSORLG00020015779	smg7	99	78.867	ENSCVAG00000011842	smg7	100	78.445	Cyprinodon_variegatus
ENSORLG00020015779	smg7	100	73.746	ENSDARG00000060767	smg7	100	73.205	Danio_rerio
ENSORLG00020015779	smg7	70	92.763	ENSDORG00000007331	Smg7	99	62.719	Dipodomys_ordii
ENSORLG00020015779	smg7	70	92.763	ENSETEG00000002654	SMG7	99	61.671	Echinops_telfairi
ENSORLG00020015779	smg7	70	92.763	ENSEASG00005006524	SMG7	99	62.469	Equus_asinus_asinus
ENSORLG00020015779	smg7	70	92.763	ENSECAG00000004313	SMG7	97	85.163	Equus_caballus
ENSORLG00020015779	smg7	65	92.908	ENSEEUG00000002024	SMG7	94	60.877	Erinaceus_europaeus
ENSORLG00020015779	smg7	100	74.958	ENSELUG00000010293	smg7	100	74.958	Esox_lucius
ENSORLG00020015779	smg7	99	63.773	ENSFCAG00000010900	SMG7	99	63.189	Felis_catus
ENSORLG00020015779	smg7	99	62.852	ENSFALG00000003047	SMG7	100	63.458	Ficedula_albicollis
ENSORLG00020015779	smg7	73	89.375	ENSFDAG00000012121	SMG7	99	62.278	Fukomys_damarensis
ENSORLG00020015779	smg7	100	79.895	ENSFHEG00000011073	smg7	100	79.458	Fundulus_heteroclitus
ENSORLG00020015779	smg7	86	80.414	ENSGMOG00000004916	smg7	91	80.414	Gadus_morhua
ENSORLG00020015779	smg7	70	92.763	ENSGALG00000004667	SMG7	99	63.135	Gallus_gallus
ENSORLG00020015779	smg7	100	79.860	ENSGAFG00000019000	smg7	100	79.072	Gambusia_affinis
ENSORLG00020015779	smg7	97	78.040	ENSGACG00000001634	smg7	99	77.384	Gasterosteus_aculeatus
ENSORLG00020015779	smg7	71	92.903	ENSGAGG00000024208	-	82	92.903	Gopherus_agassizii
ENSORLG00020015779	smg7	84	80.423	ENSGGOG00000002342	SMG7	85	87.349	Gorilla_gorilla
ENSORLG00020015779	smg7	100	81.124	ENSHBUG00000003726	smg7	100	80.537	Haplochromis_burtoni
ENSORLG00020015779	smg7	70	93.421	ENSHGLG00000009353	SMG7	99	64.193	Heterocephalus_glaber_female
ENSORLG00020015779	smg7	70	93.421	ENSHGLG00100009637	-	99	64.107	Heterocephalus_glaber_male
ENSORLG00020015779	smg7	70	88.158	ENSHGLG00100004878	-	99	57.155	Heterocephalus_glaber_male
ENSORLG00020015779	smg7	70	92.208	ENSHCOG00000012804	-	82	93.506	Hippocampus_comes
ENSORLG00020015779	smg7	100	74.348	ENSIPUG00000016997	smg7	100	73.906	Ictalurus_punctatus
ENSORLG00020015779	smg7	70	92.763	ENSSTOG00000000401	SMG7	99	62.719	Ictidomys_tridecemlineatus
ENSORLG00020015779	smg7	70	92.763	ENSJJAG00000012351	Smg7	99	62.063	Jaculus_jaculus
ENSORLG00020015779	smg7	78	72.414	ENSJJAG00000000309	-	87	76.923	Jaculus_jaculus
ENSORLG00020015779	smg7	97	75.676	ENSKMAG00000004900	smg7	100	75.946	Kryptolebias_marmoratus
ENSORLG00020015779	smg7	99	79.718	ENSLBEG00000002983	smg7	99	79.982	Labrus_bergylta
ENSORLG00020015779	smg7	54	73.693	ENSLBEG00000005220	-	75	73.862	Labrus_bergylta
ENSORLG00020015779	smg7	100	65.617	ENSLACG00000000972	SMG7	100	65.710	Latimeria_chalumnae
ENSORLG00020015779	smg7	99	68.434	ENSLOCG00000002010	smg7	99	67.357	Lepisosteus_oculatus
ENSORLG00020015779	smg7	72	91.026	ENSLAFG00000008186	SMG7	99	62.740	Loxodonta_africana
ENSORLG00020015779	smg7	78	85.057	ENSMFAG00000031653	SMG7	85	91.083	Macaca_fascicularis
ENSORLG00020015779	smg7	70	92.763	ENSMMUG00000018458	SMG7	99	63.433	Macaca_mulatta
ENSORLG00020015779	smg7	78	85.057	ENSMNEG00000034798	SMG7	85	91.083	Macaca_nemestrina
ENSORLG00020015779	smg7	99	64.021	ENSMLEG00000037170	SMG7	100	63.396	Mandrillus_leucophaeus
ENSORLG00020015779	smg7	69	98.013	ENSMAMG00000018733	smg7	86	78.409	Mastacembelus_armatus
ENSORLG00020015779	smg7	100	81.208	ENSMZEG00005015247	smg7	100	80.285	Maylandia_zebra
ENSORLG00020015779	smg7	70	92.763	ENSMGAG00000001561	SMG7	99	63.153	Meleagris_gallopavo
ENSORLG00020015779	smg7	70	92.105	ENSMAUG00000019484	Smg7	99	63.258	Mesocricetus_auratus
ENSORLG00020015779	smg7	99	64.594	ENSMICG00000007145	SMG7	82	91.083	Microcebus_murinus
ENSORLG00020015779	smg7	70	92.105	ENSMOCG00000020748	Smg7	99	62.976	Microtus_ochrogaster
ENSORLG00020015779	smg7	99	76.481	ENSMMOG00000001524	smg7	99	75.950	Mola_mola
ENSORLG00020015779	smg7	70	92.763	ENSMODG00000007139	SMG7	99	64.628	Monodelphis_domestica
ENSORLG00020015779	smg7	100	81.107	ENSMALG00000000061	smg7	93	84.236	Monopterus_albus
ENSORLG00020015779	smg7	99	63.385	MGP_CAROLIEiJ_G0014704	Smg7	99	63.472	Mus_caroli
ENSORLG00020015779	smg7	99	63.103	ENSMUSG00000042772	Smg7	99	63.190	Mus_musculus
ENSORLG00020015779	smg7	99	63.495	MGP_PahariEiJ_G0027940	Smg7	99	63.581	Mus_pahari
ENSORLG00020015779	smg7	99	63.190	MGP_SPRETEiJ_G0015511	Smg7	99	63.276	Mus_spretus
ENSORLG00020015779	smg7	98	62.879	ENSMPUG00000011732	SMG7	97	62.374	Mustela_putorius_furo
ENSORLG00020015779	smg7	73	90.000	ENSMLUG00000015417	SMG7	99	61.905	Myotis_lucifugus
ENSORLG00020015779	smg7	100	63.887	ENSNGAG00000009836	Smg7	100	63.543	Nannospalax_galili
ENSORLG00020015779	smg7	98	74.423	ENSNBRG00000024343	smg7	99	73.731	Neolamprologus_brichardi
ENSORLG00020015779	smg7	99	64.107	ENSNLEG00000018018	SMG7	100	63.481	Nomascus_leucogenys
ENSORLG00020015779	smg7	70	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSORLG00020015779	smg7	70	92.105	ENSOPRG00000013942	SMG7	96	58.326	Ochotona_princeps
ENSORLG00020015779	smg7	99	64.280	ENSODEG00000010390	SMG7	99	64.538	Octodon_degus
ENSORLG00020015779	smg7	100	81.173	ENSONIG00000000277	smg7	100	80.560	Oreochromis_niloticus
ENSORLG00020015779	smg7	99	62.699	ENSOANG00000000994	SMG7	100	61.861	Ornithorhynchus_anatinus
ENSORLG00020015779	smg7	70	92.105	ENSOCUG00000005887	SMG7	93	61.083	Oryctolagus_cuniculus
ENSORLG00020015779	smg7	100	99.126	ENSORLG00000007314	smg7	100	99.126	Oryzias_latipes
ENSORLG00020015779	smg7	100	99.644	ENSORLG00015012289	smg7	100	99.644	Oryzias_latipes_hsok
ENSORLG00020015779	smg7	100	96.507	ENSOMEG00000002328	smg7	100	96.507	Oryzias_melastigma
ENSORLG00020015779	smg7	70	92.763	ENSOGAG00000003107	SMG7	93	62.835	Otolemur_garnettii
ENSORLG00020015779	smg7	70	92.763	ENSOARG00000001352	SMG7	100	62.588	Ovis_aries
ENSORLG00020015779	smg7	81	83.333	ENSPPAG00000031619	SMG7	85	91.083	Pan_paniscus
ENSORLG00020015779	smg7	99	64.853	ENSPPRG00000011222	SMG7	99	64.508	Panthera_pardus
ENSORLG00020015779	smg7	78	84.706	ENSPTIG00000007242	SMG7	100	63.535	Panthera_tigris_altaica
ENSORLG00020015779	smg7	82	82.418	ENSPTRG00000001764	SMG7	85	91.083	Pan_troglodytes
ENSORLG00020015779	smg7	99	64.021	ENSPANG00000004520	SMG7	99	64.107	Papio_anubis
ENSORLG00020015779	smg7	100	69.856	ENSPKIG00000007242	smg7	100	69.433	Paramormyrops_kingsleyae
ENSORLG00020015779	smg7	99	63.659	ENSPSIG00000012201	SMG7	100	62.294	Pelodiscus_sinensis
ENSORLG00020015779	smg7	71	50.993	ENSPMGG00000021833	smg7	98	50.936	Periophthalmus_magnuspinnatus
ENSORLG00020015779	smg7	70	90.789	ENSPMGG00000002179	-	94	82.941	Periophthalmus_magnuspinnatus
ENSORLG00020015779	smg7	70	92.105	ENSPEMG00000011315	Smg7	99	62.860	Peromyscus_maniculatus_bairdii
ENSORLG00020015779	smg7	99	64.404	ENSPCIG00000003786	SMG7	89	91.250	Phascolarctos_cinereus
ENSORLG00020015779	smg7	100	80.117	ENSPFOG00000019219	smg7	100	79.614	Poecilia_formosa
ENSORLG00020015779	smg7	100	79.930	ENSPLAG00000001446	smg7	100	79.404	Poecilia_latipinna
ENSORLG00020015779	smg7	97	79.529	ENSPMEG00000005218	smg7	99	78.986	Poecilia_mexicana
ENSORLG00020015779	smg7	69	97.351	ENSPREG00000019039	smg7	92	79.280	Poecilia_reticulata
ENSORLG00020015779	smg7	99	64.107	ENSPPYG00000000427	SMG7	99	64.193	Pongo_abelii
ENSORLG00020015779	smg7	84	70.460	ENSPCAG00000008360	SMG7	86	70.460	Procavia_capensis
ENSORLG00020015779	smg7	84	80.749	ENSPCOG00000011996	SMG7	77	91.083	Propithecus_coquereli
ENSORLG00020015779	smg7	70	92.105	ENSPVAG00000000851	SMG7	89	58.197	Pteropus_vampyrus
ENSORLG00020015779	smg7	100	81.108	ENSPNYG00000007643	smg7	100	80.521	Pundamilia_nyererei
ENSORLG00020015779	smg7	100	73.684	ENSPNAG00000011374	smg7	100	73.645	Pygocentrus_nattereri
ENSORLG00020015779	smg7	99	63.613	ENSRNOG00000027962	Smg7	99	64.743	Rattus_norvegicus
ENSORLG00020015779	smg7	99	63.934	ENSRBIG00000036316	SMG7	100	63.311	Rhinopithecus_bieti
ENSORLG00020015779	smg7	99	63.934	ENSRROG00000035719	SMG7	100	63.311	Rhinopithecus_roxellana
ENSORLG00020015779	smg7	78	85.057	ENSSBOG00000023454	SMG7	88	90.683	Saimiri_boliviensis_boliviensis
ENSORLG00020015779	smg7	99	64.180	ENSSHAG00000013147	SMG7	99	64.125	Sarcophilus_harrisii
ENSORLG00020015779	smg7	100	70.603	ENSSFOG00015017252	smg7	100	70.017	Scleropages_formosus
ENSORLG00020015779	smg7	100	80.169	ENSSMAG00000006067	smg7	98	83.333	Scophthalmus_maximus
ENSORLG00020015779	smg7	100	81.109	ENSSDUG00000017543	smg7	100	80.763	Seriola_dumerili
ENSORLG00020015779	smg7	70	97.368	ENSSLDG00000003750	-	96	96.875	Seriola_lalandi_dorsalis
ENSORLG00020015779	smg7	99	63.621	ENSSPUG00000002064	SMG7	99	62.069	Sphenodon_punctatus
ENSORLG00020015779	smg7	98	80.752	ENSSPAG00000008733	smg7	98	80.573	Stegastes_partitus
ENSORLG00020015779	smg7	70	92.763	ENSSSCG00000015558	SMG7	99	62.228	Sus_scrofa
ENSORLG00020015779	smg7	99	63.778	ENSTGUG00000003928	SMG7	100	63.636	Taeniopygia_guttata
ENSORLG00020015779	smg7	80	84.091	ENSTRUG00000003612	-	91	87.952	Takifugu_rubripes
ENSORLG00020015779	smg7	100	71.511	ENSTNIG00000002802	smg7	93	77.889	Tetraodon_nigroviridis
ENSORLG00020015779	smg7	79	66.286	ENSTBEG00000003220	SMG7	75	66.286	Tupaia_belangeri
ENSORLG00020015779	smg7	70	92.763	ENSTTRG00000014778	SMG7	94	61.226	Tursiops_truncatus
ENSORLG00020015779	smg7	96	62.556	ENSUAMG00000017473	SMG7	100	62.016	Ursus_americanus
ENSORLG00020015779	smg7	96	62.705	ENSUMAG00000016389	SMG7	100	62.188	Ursus_maritimus
ENSORLG00020015779	smg7	70	92.763	ENSVVUG00000008976	SMG7	95	67.308	Vulpes_vulpes
ENSORLG00020015779	smg7	70	89.474	ENSXETG00000012528	smg7	99	59.607	Xenopus_tropicalis
ENSORLG00020015779	smg7	100	79.386	ENSXMAG00000007123	smg7	100	78.860	Xiphophorus_maculatus