EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00020015976 (Gene tree)
Gene ID: -
Gene Symbol: snrnp48
Alias: -
Full Name: small nuclear ribonucleoprotein 48 (U11/U12)
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 4994 bases
Position: chr16:25338932-25343925
Accession: ZDB-GENE-030131-4482
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020031122	zf-U11-48K	PF05253.12	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020023050	-	1200	-	ENSORLP00020031122	399 (aa)	-	-

Gene Model

Click here to download ENSORLG00020015976's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020015976's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020015976	snrnp48	70	46.552	ENSG00000168566	SNRNP48	88	45.779	Homo_sapiens
ENSORLG00020015976	snrnp48	80	79.321	ENSAPOG00000021430	snrnp48	88	78.188	Acanthochromis_polyacanthus
ENSORLG00020015976	snrnp48	82	45.665	ENSAMEG00000017349	SNRNP48	89	47.097	Ailuropoda_melanoleuca
ENSORLG00020015976	snrnp48	79	73.502	ENSACIG00000002032	snrnp48	87	72.635	Amphilophus_citrinellus
ENSORLG00020015976	snrnp48	80	79.321	ENSAOCG00000010562	snrnp48	88	77.517	Amphiprion_ocellaris
ENSORLG00020015976	snrnp48	80	78.947	ENSAPEG00000003231	snrnp48	88	78.788	Amphiprion_percula
ENSORLG00020015976	snrnp48	78	79.114	ENSATEG00000020210	snrnp48	88	78.571	Anabas_testudineus
ENSORLG00020015976	snrnp48	66	51.579	ENSACAG00000002811	SNRNP48	80	50.579	Anolis_carolinensis
ENSORLG00020015976	snrnp48	70	46.897	ENSANAG00000033538	SNRNP48	88	46.104	Aotus_nancymaae
ENSORLG00020015976	snrnp48	79	56.250	ENSAMXG00000015309	snrnp48	89	57.288	Astyanax_mexicanus
ENSORLG00020015976	snrnp48	75	44.207	ENSBTAG00000001123	SNRNP48	87	46.230	Bos_taurus
ENSORLG00020015976	snrnp48	70	46.897	ENSCJAG00000021330	SNRNP48	88	46.104	Callithrix_jacchus
ENSORLG00020015976	snrnp48	88	42.063	ENSCAFG00000009574	SNRNP48	78	44.136	Canis_familiaris
ENSORLG00020015976	snrnp48	79	44.282	ENSCAFG00020013203	SNRNP48	88	45.455	Canis_lupus_dingo
ENSORLG00020015976	snrnp48	75	44.512	ENSCHIG00000015216	SNRNP48	89	45.806	Capra_hircus
ENSORLG00020015976	snrnp48	69	47.719	ENSTSYG00000000698	SNRNP48	87	46.535	Carlito_syrichta
ENSORLG00020015976	snrnp48	74	43.750	ENSCAPG00000006768	SNRNP48	97	43.506	Cavia_aperea
ENSORLG00020015976	snrnp48	82	42.817	ENSCPOG00000007910	SNRNP48	97	42.773	Cavia_porcellus
ENSORLG00020015976	snrnp48	70	46.552	ENSCCAG00000035652	SNRNP48	88	45.779	Cebus_capucinus
ENSORLG00020015976	snrnp48	79	44.706	ENSCATG00000033947	SNRNP48	88	46.104	Cercocebus_atys
ENSORLG00020015976	snrnp48	69	47.719	ENSCLAG00000003765	SNRNP48	87	46.865	Chinchilla_lanigera
ENSORLG00020015976	snrnp48	70	46.897	ENSCSAG00000007409	SNRNP48	88	45.779	Chlorocebus_sabaeus
ENSORLG00020015976	snrnp48	70	47.841	ENSCPBG00000019146	SNRNP48	78	50.201	Chrysemys_picta_bellii
ENSORLG00020015976	snrnp48	70	46.897	ENSCANG00000030017	SNRNP48	88	45.779	Colobus_angolensis_palliatus
ENSORLG00020015976	snrnp48	82	44.282	ENSCGRG00001001076	-	89	46.429	Cricetulus_griseus_chok1gshd
ENSORLG00020015976	snrnp48	71	40.411	ENSCGRG00001008805	-	72	43.590	Cricetulus_griseus_chok1gshd
ENSORLG00020015976	snrnp48	82	44.282	ENSCGRG00000007781	Snrnp48	89	46.429	Cricetulus_griseus_crigri
ENSORLG00020015976	snrnp48	66	70.412	ENSCSEG00000000722	snrnp48	84	67.003	Cynoglossus_semilaevis
ENSORLG00020015976	snrnp48	78	75.159	ENSCVAG00000019829	snrnp48	77	77.852	Cyprinodon_variegatus
ENSORLG00020015976	snrnp48	78	53.086	ENSDARG00000039989	snrnp48	87	55.068	Danio_rerio
ENSORLG00020015976	snrnp48	71	47.297	ENSDNOG00000014978	SNRNP48	89	46.178	Dasypus_novemcinctus
ENSORLG00020015976	snrnp48	79	43.402	ENSDORG00000015140	Snrnp48	89	44.337	Dipodomys_ordii
ENSORLG00020015976	snrnp48	70	46.048	ENSEASG00005012021	SNRNP48	89	44.984	Equus_asinus_asinus
ENSORLG00020015976	snrnp48	70	46.392	ENSECAG00000026937	SNRNP48	89	45.307	Equus_caballus
ENSORLG00020015976	snrnp48	82	32.174	ENSEEUG00000015437	SNRNP48	88	32.362	Erinaceus_europaeus
ENSORLG00020015976	snrnp48	74	61.364	ENSELUG00000009766	snrnp48	85	61.438	Esox_lucius
ENSORLG00020015976	snrnp48	70	46.552	ENSFCAG00000018853	SNRNP48	88	45.455	Felis_catus
ENSORLG00020015976	snrnp48	69	50.000	ENSFALG00000007797	SNRNP48	76	55.000	Ficedula_albicollis
ENSORLG00020015976	snrnp48	79	44.412	ENSFDAG00000009231	SNRNP48	88	46.429	Fukomys_damarensis
ENSORLG00020015976	snrnp48	55	79.646	ENSFHEG00000014647	snrnp48	86	78.715	Fundulus_heteroclitus
ENSORLG00020015976	snrnp48	75	61.006	ENSGMOG00000018599	-	95	61.842	Gadus_morhua
ENSORLG00020015976	snrnp48	64	53.184	ENSGALG00000013005	SNRNP48	86	53.101	Gallus_gallus
ENSORLG00020015976	snrnp48	80	72.393	ENSGAFG00000021639	snrnp48	87	72.819	Gambusia_affinis
ENSORLG00020015976	snrnp48	61	75.610	ENSGACG00000017756	-	90	71.429	Gasterosteus_aculeatus
ENSORLG00020015976	snrnp48	70	46.179	ENSGAGG00000000865	SNRNP48	81	50.201	Gopherus_agassizii
ENSORLG00020015976	snrnp48	70	46.897	ENSGGOG00000013220	SNRNP48	88	46.104	Gorilla_gorilla
ENSORLG00020015976	snrnp48	79	78.864	ENSHBUG00000017066	snrnp48	87	79.125	Haplochromis_burtoni
ENSORLG00020015976	snrnp48	70	46.897	ENSHGLG00000015241	SNRNP48	88	44.805	Heterocephalus_glaber_female
ENSORLG00020015976	snrnp48	70	46.897	ENSHGLG00100010027	SNRNP48	88	44.805	Heterocephalus_glaber_male
ENSORLG00020015976	snrnp48	68	67.376	ENSHCOG00000014066	snrnp48	88	66.557	Hippocampus_comes
ENSORLG00020015976	snrnp48	70	46.897	ENSSTOG00000014635	SNRNP48	88	46.104	Ictidomys_tridecemlineatus
ENSORLG00020015976	snrnp48	70	47.751	ENSJJAG00000011495	Snrnp48	88	46.580	Jaculus_jaculus
ENSORLG00020015976	snrnp48	80	74.845	ENSKMAG00000016514	snrnp48	88	76.431	Kryptolebias_marmoratus
ENSORLG00020015976	snrnp48	68	75.451	ENSLBEG00000026249	snrnp48	88	75.168	Labrus_bergylta
ENSORLG00020015976	snrnp48	80	46.588	ENSLACG00000003958	SNRNP48	87	47.682	Latimeria_chalumnae
ENSORLG00020015976	snrnp48	68	63.309	ENSLOCG00000004187	snrnp48	87	61.149	Lepisosteus_oculatus
ENSORLG00020015976	snrnp48	71	45.608	ENSLAFG00000011152	SNRNP48	87	45.066	Loxodonta_africana
ENSORLG00020015976	snrnp48	70	46.897	ENSMFAG00000045216	SNRNP48	88	45.779	Macaca_fascicularis
ENSORLG00020015976	snrnp48	70	46.897	ENSMMUG00000014785	SNRNP48	88	45.779	Macaca_mulatta
ENSORLG00020015976	snrnp48	70	46.897	ENSMNEG00000042269	SNRNP48	88	45.779	Macaca_nemestrina
ENSORLG00020015976	snrnp48	70	46.897	ENSMLEG00000034004	SNRNP48	88	45.779	Mandrillus_leucophaeus
ENSORLG00020015976	snrnp48	81	74.540	ENSMAMG00000018673	snrnp48	78	73.510	Mastacembelus_armatus
ENSORLG00020015976	snrnp48	69	51.351	ENSMGAG00000006037	SNRNP48	81	54.733	Meleagris_gallopavo
ENSORLG00020015976	snrnp48	82	43.860	ENSMAUG00000011944	Snrnp48	89	46.278	Mesocricetus_auratus
ENSORLG00020015976	snrnp48	70	46.048	ENSMICG00000012497	SNRNP48	88	45.631	Microcebus_murinus
ENSORLG00020015976	snrnp48	82	44.023	ENSMOCG00000015555	Snrnp48	89	46.774	Microtus_ochrogaster
ENSORLG00020015976	snrnp48	72	45.545	ENSMODG00000009996	SNRNP48	85	45.223	Monodelphis_domestica
ENSORLG00020015976	snrnp48	80	73.292	ENSMALG00000005725	snrnp48	88	74.411	Monopterus_albus
ENSORLG00020015976	snrnp48	82	44.282	MGP_CAROLIEiJ_G0018441	Snrnp48	89	46.429	Mus_caroli
ENSORLG00020015976	snrnp48	82	44.282	ENSMUSG00000021431	Snrnp48	89	46.429	Mus_musculus
ENSORLG00020015976	snrnp48	82	45.161	MGP_PahariEiJ_G0019509	Snrnp48	89	47.078	Mus_pahari
ENSORLG00020015976	snrnp48	82	44.575	MGP_SPRETEiJ_G0019321	Snrnp48	89	46.429	Mus_spretus
ENSORLG00020015976	snrnp48	79	45.588	ENSNGAG00000004849	Snrnp48	88	47.078	Nannospalax_galili
ENSORLG00020015976	snrnp48	79	79.180	ENSNBRG00000012127	snrnp48	87	79.461	Neolamprologus_brichardi
ENSORLG00020015976	snrnp48	70	46.897	ENSNLEG00000011667	SNRNP48	88	46.104	Nomascus_leucogenys
ENSORLG00020015976	snrnp48	70	47.038	ENSOPRG00000015471	SNRNP48	92	46.382	Ochotona_princeps
ENSORLG00020015976	snrnp48	79	79.811	ENSONIG00000001520	snrnp48	87	80.808	Oreochromis_niloticus
ENSORLG00020015976	snrnp48	66	47.273	ENSOCUG00000005168	SNRNP48	99	46.104	Oryctolagus_cuniculus
ENSORLG00020015976	snrnp48	86	97.085	ENSORLG00000015654	snrnp48	100	97.085	Oryzias_latipes
ENSORLG00020015976	snrnp48	94	86.364	ENSORLG00015022379	snrnp48	81	97.826	Oryzias_latipes_hsok
ENSORLG00020015976	snrnp48	79	90.127	ENSOMEG00000022007	snrnp48	87	90.816	Oryzias_melastigma
ENSORLG00020015976	snrnp48	69	46.528	ENSOGAG00000005275	SNRNP48	90	45.425	Otolemur_garnettii
ENSORLG00020015976	snrnp48	67	46.875	ENSOARG00000017319	SNRNP48	86	49.804	Ovis_aries
ENSORLG00020015976	snrnp48	70	46.897	ENSPPAG00000032873	SNRNP48	88	46.104	Pan_paniscus
ENSORLG00020015976	snrnp48	70	46.207	ENSPPRG00000004283	SNRNP48	88	45.130	Panthera_pardus
ENSORLG00020015976	snrnp48	58	50.424	ENSPTIG00000013502	SNRNP48	86	48.819	Panthera_tigris_altaica
ENSORLG00020015976	snrnp48	70	46.897	ENSPTRG00000017703	SNRNP48	88	46.104	Pan_troglodytes
ENSORLG00020015976	snrnp48	70	46.897	ENSPANG00000000771	SNRNP48	88	45.779	Papio_anubis
ENSORLG00020015976	snrnp48	68	59.929	ENSPKIG00000013703	snrnp48	60	58.865	Paramormyrops_kingsleyae
ENSORLG00020015976	snrnp48	69	47.475	ENSPSIG00000002213	SNRNP48	76	51.020	Pelodiscus_sinensis
ENSORLG00020015976	snrnp48	65	60.967	ENSPMGG00000008120	snrnp48	92	62.162	Periophthalmus_magnuspinnatus
ENSORLG00020015976	snrnp48	79	44.477	ENSPEMG00000008872	Snrnp48	89	47.403	Peromyscus_maniculatus_bairdii
ENSORLG00020015976	snrnp48	80	73.313	ENSPFOG00000003578	snrnp48	87	73.490	Poecilia_formosa
ENSORLG00020015976	snrnp48	58	75.000	ENSPLAG00000002290	snrnp48	82	75.000	Poecilia_latipinna
ENSORLG00020015976	snrnp48	80	73.313	ENSPMEG00000018033	snrnp48	87	73.490	Poecilia_mexicana
ENSORLG00020015976	snrnp48	80	71.779	ENSPREG00000018541	snrnp48	87	74.161	Poecilia_reticulata
ENSORLG00020015976	snrnp48	70	46.207	ENSPPYG00000016209	SNRNP48	88	45.455	Pongo_abelii
ENSORLG00020015976	snrnp48	59	37.959	ENSPCAG00000011991	SNRNP48	93	37.849	Procavia_capensis
ENSORLG00020015976	snrnp48	70	46.875	ENSPVAG00000002854	SNRNP48	88	46.078	Pteropus_vampyrus
ENSORLG00020015976	snrnp48	77	79.288	ENSPNYG00000015399	snrnp48	95	80.135	Pundamilia_nyererei
ENSORLG00020015976	snrnp48	82	44.575	ENSRNOG00000013756	Snrnp48	89	46.429	Rattus_norvegicus
ENSORLG00020015976	snrnp48	70	46.897	ENSRBIG00000043856	SNRNP48	95	45.779	Rhinopithecus_bieti
ENSORLG00020015976	snrnp48	70	46.897	ENSRROG00000043229	SNRNP48	88	45.779	Rhinopithecus_roxellana
ENSORLG00020015976	snrnp48	70	47.241	ENSSBOG00000019486	SNRNP48	88	46.429	Saimiri_boliviensis_boliviensis
ENSORLG00020015976	snrnp48	70	47.297	ENSSHAG00000014483	SNRNP48	89	46.774	Sarcophilus_harrisii
ENSORLG00020015976	snrnp48	60	60.887	ENSSFOG00015006610	snrnp48	72	59.934	Scleropages_formosus
ENSORLG00020015976	snrnp48	80	75.235	ENSSDUG00000014953	snrnp48	88	76.190	Seriola_dumerili
ENSORLG00020015976	snrnp48	80	74.922	ENSSLDG00000005989	snrnp48	88	75.850	Seriola_lalandi_dorsalis
ENSORLG00020015976	snrnp48	69	46.801	ENSSPUG00000006257	SNRNP48	71	49.200	Sphenodon_punctatus
ENSORLG00020015976	snrnp48	80	78.638	ENSSPAG00000006454	snrnp48	88	78.523	Stegastes_partitus
ENSORLG00020015976	snrnp48	68	49.669	ENSTGUG00000007575	SNRNP48	84	52.075	Taeniopygia_guttata
ENSORLG00020015976	snrnp48	80	64.087	ENSTRUG00000007031	snrnp48	88	69.799	Takifugu_rubripes
ENSORLG00020015976	snrnp48	80	67.702	ENSTNIG00000012977	-	86	67.114	Tetraodon_nigroviridis
ENSORLG00020015976	snrnp48	63	47.692	ENSTBEG00000015620	SNRNP48	75	47.266	Tupaia_belangeri
ENSORLG00020015976	snrnp48	78	44.681	ENSTTRG00000016715	SNRNP48	88	46.254	Tursiops_truncatus
ENSORLG00020015976	snrnp48	82	46.064	ENSUAMG00000003690	SNRNP48	88	46.906	Ursus_americanus
ENSORLG00020015976	snrnp48	58	51.477	ENSVPAG00000003557	SNRNP48	86	50.196	Vicugna_pacos
ENSORLG00020015976	snrnp48	79	44.282	ENSVVUG00000004996	SNRNP48	88	45.455	Vulpes_vulpes
ENSORLG00020015976	snrnp48	73	46.535	ENSXETG00000020447	snrnp48	88	46.801	Xenopus_tropicalis
ENSORLG00020015976	snrnp48	59	75.105	ENSXCOG00000004478	snrnp48	86	67.340	Xiphophorus_couchianus
ENSORLG00020015976	snrnp48	80	74.085	ENSXMAG00000013595	snrnp48	87	74.000	Xiphophorus_maculatus