EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00020016510 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: -
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Oryzias_latipes_hni
Status: putative
Strand: Plus strand
Length: 26929 bases
Position: chr8:12642762-12669690
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00020015485	Ago_hook	PF10427.9	7.5e-06	1	1
ENSORLP00020015505	Ago_hook	PF10427.9	7.5e-06	1	1
ENSORLP00020015449	Ago_hook	PF10427.9	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00020023553	-	5336	-	ENSORLP00020015505	1625 (aa)	-	-
ENSORLT00020023459	-	5172	-	ENSORLP00020015449	1723 (aa)	-	-
ENSORLT00020033475	-	5135	-	ENSORLP00020015485	1588 (aa)	-	-

Gene Model

Click here to download ENSORLG00020016510's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00020016510's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00020016510	tnrc6c1	100	52.958	ENSORLG00020010730	tnrc6c2	90	53.106

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00020016510	tnrc6c1	100	49.140	ENSG00000078687	TNRC6C	95	51.351	Homo_sapiens
ENSORLG00020016510	tnrc6c1	100	81.234	ENSAPOG00000019749	tnrc6c1	100	78.522	Acanthochromis_polyacanthus
ENSORLG00020016510	tnrc6c1	100	47.627	ENSAMEG00000013756	TNRC6C	98	47.321	Ailuropoda_melanoleuca
ENSORLG00020016510	tnrc6c1	100	70.741	ENSACIG00000008075	tnrc6c1	99	71.250	Amphilophus_citrinellus
ENSORLG00020016510	tnrc6c1	100	80.877	ENSAOCG00000023968	tnrc6c1	100	80.080	Amphiprion_ocellaris
ENSORLG00020016510	tnrc6c1	100	80.938	ENSAPEG00000009020	tnrc6c1	100	80.137	Amphiprion_percula
ENSORLG00020016510	tnrc6c1	100	48.411	ENSAPLG00000005456	TNRC6C	94	47.089	Anas_platyrhynchos
ENSORLG00020016510	tnrc6c1	99	48.265	ENSACAG00000016198	TNRC6C	92	47.349	Anolis_carolinensis
ENSORLG00020016510	tnrc6c1	100	49.087	ENSANAG00000021554	TNRC6C	91	50.214	Aotus_nancymaae
ENSORLG00020016510	tnrc6c1	100	71.369	ENSACLG00000000424	tnrc6c1	99	70.970	Astatotilapia_calliptera
ENSORLG00020016510	tnrc6c1	99	46.062	ENSBTAG00000018658	TNRC6C	92	49.940	Bos_taurus
ENSORLG00020016510	tnrc6c1	100	48.976	ENSCJAG00000019431	TNRC6C	91	50.488	Callithrix_jacchus
ENSORLG00020016510	tnrc6c1	91	57.700	ENSCAFG00000005224	TNRC6C	92	48.522	Canis_familiaris
ENSORLG00020016510	tnrc6c1	97	48.966	ENSCAFG00020006661	TNRC6C	100	48.278	Canis_lupus_dingo
ENSORLG00020016510	tnrc6c1	95	57.430	ENSCHIG00000026004	TNRC6C	91	51.295	Capra_hircus
ENSORLG00020016510	tnrc6c1	97	49.916	ENSTSYG00000005403	TNRC6C	92	50.150	Carlito_syrichta
ENSORLG00020016510	tnrc6c1	100	45.339	ENSCAPG00000007307	TNRC6C	93	43.326	Cavia_aperea
ENSORLG00020016510	tnrc6c1	100	48.330	ENSCPOG00000000467	TNRC6C	99	46.730	Cavia_porcellus
ENSORLG00020016510	tnrc6c1	100	49.533	ENSCCAG00000030524	TNRC6C	92	50.239	Cebus_capucinus
ENSORLG00020016510	tnrc6c1	100	49.335	ENSCATG00000033135	TNRC6C	92	50.180	Cercocebus_atys
ENSORLG00020016510	tnrc6c1	100	49.529	ENSCLAG00000011139	TNRC6C	93	47.760	Chinchilla_lanigera
ENSORLG00020016510	tnrc6c1	100	49.130	ENSCSAG00000005167	TNRC6C	93	47.567	Chlorocebus_sabaeus
ENSORLG00020016510	tnrc6c1	65	61.654	ENSCHOG00000000088	TNRC6C	63	61.728	Choloepus_hoffmanni
ENSORLG00020016510	tnrc6c1	100	50.334	ENSCPBG00000027960	TNRC6C	100	46.798	Chrysemys_picta_bellii
ENSORLG00020016510	tnrc6c1	100	49.335	ENSCANG00000041771	TNRC6C	92	50.184	Colobus_angolensis_palliatus
ENSORLG00020016510	tnrc6c1	100	48.124	ENSCGRG00001022686	Tnrc6c	91	48.652	Cricetulus_griseus_chok1gshd
ENSORLG00020016510	tnrc6c1	100	48.505	ENSCGRG00000018041	Tnrc6c	91	48.652	Cricetulus_griseus_crigri
ENSORLG00020016510	tnrc6c1	100	74.053	ENSCSEG00000012744	tnrc6c1	95	71.765	Cynoglossus_semilaevis
ENSORLG00020016510	tnrc6c1	94	73.273	ENSDARG00000076847	tnrc6c1	99	58.792	Danio_rerio
ENSORLG00020016510	tnrc6c1	100	49.526	ENSDNOG00000003247	TNRC6C	95	48.879	Dasypus_novemcinctus
ENSORLG00020016510	tnrc6c1	97	46.202	ENSDORG00000004558	Tnrc6c	91	47.465	Dipodomys_ordii
ENSORLG00020016510	tnrc6c1	84	52.010	ENSETEG00000005527	TNRC6C	80	51.804	Echinops_telfairi
ENSORLG00020016510	tnrc6c1	100	48.278	ENSEASG00005004799	TNRC6C	91	50.462	Equus_asinus_asinus
ENSORLG00020016510	tnrc6c1	100	48.414	ENSECAG00000012486	TNRC6C	93	47.599	Equus_caballus
ENSORLG00020016510	tnrc6c1	90	55.018	ENSEEUG00000010008	TNRC6C	92	52.910	Erinaceus_europaeus
ENSORLG00020016510	tnrc6c1	100	48.339	ENSFCAG00000028358	TNRC6C	100	48.282	Felis_catus
ENSORLG00020016510	tnrc6c1	83	52.082	ENSFALG00000000848	TNRC6C	92	48.944	Ficedula_albicollis
ENSORLG00020016510	tnrc6c1	100	48.554	ENSFDAG00000010368	TNRC6C	99	46.999	Fukomys_damarensis
ENSORLG00020016510	tnrc6c1	100	78.311	ENSFHEG00000002936	tnrc6c1	100	77.351	Fundulus_heteroclitus
ENSORLG00020016510	tnrc6c1	100	50.530	ENSGALG00000001725	TNRC6C	100	50.056	Gallus_gallus
ENSORLG00020016510	tnrc6c1	100	79.818	ENSGAFG00000019019	tnrc6c1	100	79.229	Gambusia_affinis
ENSORLG00020016510	tnrc6c1	100	69.988	ENSGACG00000012320	tnrc6c1	92	68.263	Gasterosteus_aculeatus
ENSORLG00020016510	tnrc6c1	100	50.285	ENSGAGG00000022043	TNRC6C	100	47.455	Gopherus_agassizii
ENSORLG00020016510	tnrc6c1	100	49.140	ENSGGOG00000011304	TNRC6C	92	50.419	Gorilla_gorilla
ENSORLG00020016510	tnrc6c1	100	77.604	ENSHBUG00000010846	tnrc6c1	100	76.779	Haplochromis_burtoni
ENSORLG00020016510	tnrc6c1	100	48.941	ENSHGLG00000004809	TNRC6C	93	46.600	Heterocephalus_glaber_female
ENSORLG00020016510	tnrc6c1	100	48.222	ENSHGLG00100012597	TNRC6C	93	46.194	Heterocephalus_glaber_male
ENSORLG00020016510	tnrc6c1	100	60.885	ENSIPUG00000000818	tnrc6c1	94	57.895	Ictalurus_punctatus
ENSORLG00020016510	tnrc6c1	100	49.001	ENSSTOG00000009101	TNRC6C	99	46.900	Ictidomys_tridecemlineatus
ENSORLG00020016510	tnrc6c1	100	48.554	ENSJJAG00000017055	Tnrc6c	93	45.981	Jaculus_jaculus
ENSORLG00020016510	tnrc6c1	100	74.606	ENSKMAG00000021023	tnrc6c1	100	73.714	Kryptolebias_marmoratus
ENSORLG00020016510	tnrc6c1	92	63.212	ENSLACG00000015283	TNRC6C	95	61.658	Latimeria_chalumnae
ENSORLG00020016510	tnrc6c1	99	78.414	ENSLOCG00000013377	tnrc6c1	89	78.414	Lepisosteus_oculatus
ENSORLG00020016510	tnrc6c1	99	47.046	ENSLAFG00000011122	TNRC6C	99	46.854	Loxodonta_africana
ENSORLG00020016510	tnrc6c1	100	49.335	ENSMFAG00000043943	TNRC6C	92	50.180	Macaca_fascicularis
ENSORLG00020016510	tnrc6c1	100	49.335	ENSMMUG00000011924	TNRC6C	91	50.245	Macaca_mulatta
ENSORLG00020016510	tnrc6c1	100	49.279	ENSMNEG00000030405	TNRC6C	95	46.852	Macaca_nemestrina
ENSORLG00020016510	tnrc6c1	100	49.335	ENSMLEG00000033436	TNRC6C	92	50.180	Mandrillus_leucophaeus
ENSORLG00020016510	tnrc6c1	100	77.217	ENSMAMG00000023613	tnrc6c1	100	75.547	Mastacembelus_armatus
ENSORLG00020016510	tnrc6c1	100	77.839	ENSMZEG00005010920	tnrc6c1	100	76.684	Maylandia_zebra
ENSORLG00020016510	tnrc6c1	100	43.440	ENSMGAG00000003906	TNRC6C	50	53.783	Meleagris_gallopavo
ENSORLG00020016510	tnrc6c1	100	48.152	ENSMAUG00000021618	Tnrc6c	91	49.082	Mesocricetus_auratus
ENSORLG00020016510	tnrc6c1	100	48.082	ENSMICG00000003952	TNRC6C	92	49.970	Microcebus_murinus
ENSORLG00020016510	tnrc6c1	100	48.500	ENSMOCG00000015879	Tnrc6c	99	46.631	Microtus_ochrogaster
ENSORLG00020016510	tnrc6c1	100	75.817	ENSMMOG00000005203	tnrc6c1	100	75.262	Mola_mola
ENSORLG00020016510	tnrc6c1	100	46.493	ENSMODG00000001785	TNRC6C	93	45.637	Monodelphis_domestica
ENSORLG00020016510	tnrc6c1	100	48.084	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	46.170	Mus_caroli
ENSORLG00020016510	tnrc6c1	99	48.374	ENSMUSG00000025571	Tnrc6c	99	46.391	Mus_musculus
ENSORLG00020016510	tnrc6c1	100	48.251	MGP_PahariEiJ_G0018593	Tnrc6c	99	46.394	Mus_pahari
ENSORLG00020016510	tnrc6c1	99	48.262	MGP_SPRETEiJ_G0018309	Tnrc6c	99	46.285	Mus_spretus
ENSORLG00020016510	tnrc6c1	99	47.770	ENSMPUG00000013348	TNRC6C	92	47.113	Mustela_putorius_furo
ENSORLG00020016510	tnrc6c1	99	45.716	ENSMLUG00000014431	TNRC6C	92	45.342	Myotis_lucifugus
ENSORLG00020016510	tnrc6c1	97	48.681	ENSNGAG00000012203	Tnrc6c	93	45.814	Nannospalax_galili
ENSORLG00020016510	tnrc6c1	100	77.965	ENSNBRG00000005344	tnrc6c1	100	75.547	Neolamprologus_brichardi
ENSORLG00020016510	tnrc6c1	100	47.257	ENSNLEG00000000047	TNRC6C	93	45.436	Nomascus_leucogenys
ENSORLG00020016510	tnrc6c1	93	45.276	ENSMEUG00000005104	TNRC6C	94	73.262	Notamacropus_eugenii
ENSORLG00020016510	tnrc6c1	100	49.114	ENSODEG00000012499	TNRC6C	100	47.993	Octodon_degus
ENSORLG00020016510	tnrc6c1	100	78.250	ENSONIG00000002210	tnrc6c1	100	77.562	Oreochromis_niloticus
ENSORLG00020016510	tnrc6c1	70	48.103	ENSOANG00000009758	-	56	54.825	Ornithorhynchus_anatinus
ENSORLG00020016510	tnrc6c1	100	98.048	ENSORLG00000009837	tnrc6c1	100	96.053	Oryzias_latipes
ENSORLG00020016510	tnrc6c1	79	98.075	ENSORLG00015000171	tnrc6c1	99	98.075	Oryzias_latipes_hsok
ENSORLG00020016510	tnrc6c1	100	93.374	ENSOMEG00000000357	tnrc6c1	100	93.229	Oryzias_melastigma
ENSORLG00020016510	tnrc6c1	100	47.248	ENSOGAG00000007197	TNRC6C	92	48.767	Otolemur_garnettii
ENSORLG00020016510	tnrc6c1	95	45.684	ENSOARG00000006041	TNRC6C	92	46.260	Ovis_aries
ENSORLG00020016510	tnrc6c1	100	49.140	ENSPPAG00000027160	TNRC6C	92	50.270	Pan_paniscus
ENSORLG00020016510	tnrc6c1	97	48.997	ENSPPRG00000018881	TNRC6C	91	49.756	Panthera_pardus
ENSORLG00020016510	tnrc6c1	100	49.196	ENSPTRG00000009699	TNRC6C	92	50.330	Pan_troglodytes
ENSORLG00020016510	tnrc6c1	100	49.417	ENSPANG00000019994	TNRC6C	95	46.904	Papio_anubis
ENSORLG00020016510	tnrc6c1	100	54.043	ENSPKIG00000005428	tnrc6c1	100	55.204	Paramormyrops_kingsleyae
ENSORLG00020016510	tnrc6c1	100	48.972	ENSPSIG00000018069	TNRC6C	99	46.769	Pelodiscus_sinensis
ENSORLG00020016510	tnrc6c1	93	71.008	ENSPMGG00000022911	tnrc6c1	96	77.959	Periophthalmus_magnuspinnatus
ENSORLG00020016510	tnrc6c1	97	49.169	ENSPEMG00000009785	Tnrc6c	93	45.729	Peromyscus_maniculatus_bairdii
ENSORLG00020016510	tnrc6c1	54	38.330	ENSPCIG00000017421	-	85	38.462	Phascolarctos_cinereus
ENSORLG00020016510	tnrc6c1	100	79.660	ENSPFOG00000012560	tnrc6c1	99	74.566	Poecilia_formosa
ENSORLG00020016510	tnrc6c1	100	79.503	ENSPLAG00000021055	tnrc6c1	100	79.193	Poecilia_latipinna
ENSORLG00020016510	tnrc6c1	100	49.103	ENSPPYG00000008679	TNRC6C	92	47.747	Pongo_abelii
ENSORLG00020016510	tnrc6c1	85	65.625	ENSPCAG00000012510	TNRC6C	84	66.071	Procavia_capensis
ENSORLG00020016510	tnrc6c1	100	48.859	ENSPCOG00000021451	TNRC6C	92	50.000	Propithecus_coquereli
ENSORLG00020016510	tnrc6c1	75	60.606	ENSPVAG00000002008	TNRC6C	95	60.606	Pteropus_vampyrus
ENSORLG00020016510	tnrc6c1	100	77.900	ENSPNYG00000014477	tnrc6c1	100	76.742	Pundamilia_nyererei
ENSORLG00020016510	tnrc6c1	79	54.086	ENSRNOG00000022395	Tnrc6c	91	49.201	Rattus_norvegicus
ENSORLG00020016510	tnrc6c1	100	49.279	ENSRBIG00000027777	TNRC6C	92	50.120	Rhinopithecus_bieti
ENSORLG00020016510	tnrc6c1	100	49.279	ENSRROG00000042912	TNRC6C	92	50.120	Rhinopithecus_roxellana
ENSORLG00020016510	tnrc6c1	100	49.077	ENSSBOG00000023981	TNRC6C	92	50.330	Saimiri_boliviensis_boliviensis
ENSORLG00020016510	tnrc6c1	54	62.644	ENSSHAG00000018330	-	99	61.805	Sarcophilus_harrisii
ENSORLG00020016510	tnrc6c1	100	58.133	ENSSFOG00015006475	tnrc6c1	96	55.823	Scleropages_formosus
ENSORLG00020016510	tnrc6c1	89	62.279	ENSSFOG00015004735	-	99	65.990	Scleropages_formosus
ENSORLG00020016510	tnrc6c1	100	76.598	ENSSMAG00000012761	tnrc6c1	100	76.226	Scophthalmus_maximus
ENSORLG00020016510	tnrc6c1	100	79.042	ENSSDUG00000002366	tnrc6c1	98	77.925	Seriola_dumerili
ENSORLG00020016510	tnrc6c1	100	78.856	ENSSLDG00000025613	tnrc6c1	100	79.478	Seriola_lalandi_dorsalis
ENSORLG00020016510	tnrc6c1	69	62.140	ENSSARG00000006816	TNRC6C	91	60.902	Sorex_araneus
ENSORLG00020016510	tnrc6c1	84	49.604	ENSSPUG00000007341	TNRC6C	88	51.652	Sphenodon_punctatus
ENSORLG00020016510	tnrc6c1	98	80.392	ENSSPAG00000014977	tnrc6c1	97	80.093	Stegastes_partitus
ENSORLG00020016510	tnrc6c1	99	48.027	ENSSSCG00000034373	TNRC6C	92	49.223	Sus_scrofa
ENSORLG00020016510	tnrc6c1	83	53.509	ENSTGUG00000007733	TNRC6C	99	47.121	Taeniopygia_guttata
ENSORLG00020016510	tnrc6c1	100	72.965	ENSTRUG00000011685	tnrc6c1	100	71.789	Takifugu_rubripes
ENSORLG00020016510	tnrc6c1	100	68.053	ENSTNIG00000005273	tnrc6c1	100	74.253	Tetraodon_nigroviridis
ENSORLG00020016510	tnrc6c1	67	50.129	ENSTBEG00000005046	TNRC6C	100	48.841	Tupaia_belangeri
ENSORLG00020016510	tnrc6c1	100	48.605	ENSTTRG00000010828	TNRC6C	99	47.629	Tursiops_truncatus
ENSORLG00020016510	tnrc6c1	100	47.105	ENSUMAG00000013614	TNRC6C	92	47.140	Ursus_maritimus
ENSORLG00020016510	tnrc6c1	50	62.785	ENSVPAG00000006765	-	83	61.644	Vicugna_pacos
ENSORLG00020016510	tnrc6c1	97	51.011	ENSVVUG00000015268	TNRC6C	100	50.363	Vulpes_vulpes
ENSORLG00020016510	tnrc6c1	99	48.624	ENSXETG00000019470	tnrc6c	99	47.587	Xenopus_tropicalis
ENSORLG00020016510	tnrc6c1	100	79.353	ENSXMAG00000025971	tnrc6c1	100	78.980	Xiphophorus_maculatus